data_5YTB
#
_model_server_result.job_id            IJDN4a1bC1YEqSAynqGOPQ 
_model_server_result.datetime_utc      '2024-11-27 04:02:47' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5ytb 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"K","auth_seq_id":1103}' 
#
_entry.id    5YTB 
#
_exptl.entry_id    5YTB 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              35.453 
_entity.id                          7 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'CHLORIDE ION' 
_entity.pdbx_number_of_molecules    7 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5YTB 
_cell.length_a            105.285 
_cell.length_b            105.285 
_cell.length_c            305.726 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5YTB 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        96 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 43 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 7 G N N 
? 7 H N N 
? 7 J N N 
? 7 K N N 
? 7 L N N 
? 7 M N N 
? 7 N N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OG1 THR 24 A THR 24 1_555 E MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? 
metalc ? metalc2 A OG1 THR 42 A THR 42 1_555 E MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.215 ? 
metalc ? metalc3 D O2G GTP . A GTP 301 1_555 E MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.884 ? 
metalc ? metalc4 D O1B GTP . A GTP 301 1_555 E MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.995 ? 
metalc ? metalc5 E MG MG . A MG 302 1_555 S O HOH . A HOH 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.108 ? 
metalc ? metalc6 E MG MG . A MG 302 1_555 S O HOH . A HOH 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
#
_chem_comp.formula           'Cl -1' 
_chem_comp.formula_weight    35.453 
_chem_comp.id                CL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'CHLORIDE ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     5YTB 
_atom_sites.fract_transf_matrix[1][1]    0.009498 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009498 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.003271 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 4 GTP A 1 301 1177 GTP GTP . 
E 5 MG A 1 302 302 MG MG . 
F 6 EDO A 1 303 303 EDO EDO . 
G 7 CL A 1 304 1101 CL CL . 
H 7 CL A 1 305 1112 CL CL . 
I 8 GOL C 1 1101 1102 GOL GOL . 
J 7 CL C 1 1102 1104 CL CL . 
K 7 CL C 1 1103 1105 CL CL . 
L 7 CL C 1 1104 1106 CL CL . 
M 7 CL C 1 1105 1107 CL CL . 
N 7 CL C 1 1106 1103 CL CL . 
O 9 ACT C 1 1107 1108 ACT ACT . 
P 9 ACT C 1 1108 1109 ACT ACT . 
Q 8 GOL C 1 1109 1110 GOL GOL . 
R 8 GOL C 1 1110 1111 GOL GOL . 
S 10 HOH A 1 401 194 HOH HOH . 
S 10 HOH A 2 402 218 HOH HOH . 
S 10 HOH A 3 403 142 HOH HOH . 
S 10 HOH A 4 404 61 HOH HOH . 
S 10 HOH A 5 405 54 HOH HOH . 
S 10 HOH A 6 406 175 HOH HOH . 
S 10 HOH A 7 407 58 HOH HOH . 
S 10 HOH A 8 408 126 HOH HOH . 
S 10 HOH A 9 409 14 HOH HOH . 
S 10 HOH A 10 410 212 HOH HOH . 
S 10 HOH A 11 411 70 HOH HOH . 
S 10 HOH A 12 412 66 HOH HOH . 
S 10 HOH A 13 413 77 HOH HOH . 
S 10 HOH A 14 414 107 HOH HOH . 
S 10 HOH A 15 415 8 HOH HOH . 
S 10 HOH A 16 416 206 HOH HOH . 
S 10 HOH A 17 417 79 HOH HOH . 
S 10 HOH A 18 418 186 HOH HOH . 
S 10 HOH A 19 419 62 HOH HOH . 
S 10 HOH A 20 420 228 HOH HOH . 
S 10 HOH A 21 421 141 HOH HOH . 
S 10 HOH A 22 422 221 HOH HOH . 
S 10 HOH A 23 423 219 HOH HOH . 
S 10 HOH A 24 424 139 HOH HOH . 
S 10 HOH A 25 425 2 HOH HOH . 
S 10 HOH A 26 426 220 HOH HOH . 
S 10 HOH A 27 427 161 HOH HOH . 
S 10 HOH A 28 428 3 HOH HOH . 
S 10 HOH A 29 429 28 HOH HOH . 
S 10 HOH A 30 430 155 HOH HOH . 
S 10 HOH A 31 431 6 HOH HOH . 
S 10 HOH A 32 432 145 HOH HOH . 
S 10 HOH A 33 433 4 HOH HOH . 
S 10 HOH A 34 434 209 HOH HOH . 
S 10 HOH A 35 435 123 HOH HOH . 
S 10 HOH A 36 436 71 HOH HOH . 
S 10 HOH A 37 437 1 HOH HOH . 
S 10 HOH A 38 438 7 HOH HOH . 
S 10 HOH A 39 439 224 HOH HOH . 
S 10 HOH A 40 440 154 HOH HOH . 
S 10 HOH A 41 441 217 HOH HOH . 
S 10 HOH A 42 442 120 HOH HOH . 
S 10 HOH A 43 443 100 HOH HOH . 
S 10 HOH A 44 444 5 HOH HOH . 
S 10 HOH A 45 445 199 HOH HOH . 
S 10 HOH A 46 446 106 HOH HOH . 
S 10 HOH A 47 447 81 HOH HOH . 
S 10 HOH A 48 448 215 HOH HOH . 
S 10 HOH A 49 449 153 HOH HOH . 
S 10 HOH A 50 450 211 HOH HOH . 
S 10 HOH A 51 451 229 HOH HOH . 
S 10 HOH A 52 452 172 HOH HOH . 
S 10 HOH A 53 453 213 HOH HOH . 
T 10 HOH B 1 301 222 HOH HOH . 
T 10 HOH B 2 302 173 HOH HOH . 
T 10 HOH B 3 303 52 HOH HOH . 
T 10 HOH B 4 304 96 HOH HOH . 
T 10 HOH B 5 305 225 HOH HOH . 
T 10 HOH B 6 306 9 HOH HOH . 
T 10 HOH B 7 307 53 HOH HOH . 
T 10 HOH B 8 308 160 HOH HOH . 
T 10 HOH B 9 309 69 HOH HOH . 
U 10 HOH C 1 1201 56 HOH HOH . 
U 10 HOH C 2 1202 65 HOH HOH . 
U 10 HOH C 3 1203 179 HOH HOH . 
U 10 HOH C 4 1204 226 HOH HOH . 
U 10 HOH C 5 1205 23 HOH HOH . 
U 10 HOH C 6 1206 35 HOH HOH . 
U 10 HOH C 7 1207 167 HOH HOH . 
U 10 HOH C 8 1208 143 HOH HOH . 
U 10 HOH C 9 1209 76 HOH HOH . 
U 10 HOH C 10 1210 20 HOH HOH . 
U 10 HOH C 11 1211 19 HOH HOH . 
U 10 HOH C 12 1212 133 HOH HOH . 
U 10 HOH C 13 1213 128 HOH HOH . 
U 10 HOH C 14 1214 180 HOH HOH . 
U 10 HOH C 15 1215 195 HOH HOH . 
U 10 HOH C 16 1216 119 HOH HOH . 
U 10 HOH C 17 1217 192 HOH HOH . 
U 10 HOH C 18 1218 32 HOH HOH . 
U 10 HOH C 19 1219 16 HOH HOH . 
U 10 HOH C 20 1220 182 HOH HOH . 
U 10 HOH C 21 1221 137 HOH HOH . 
U 10 HOH C 22 1222 33 HOH HOH . 
U 10 HOH C 23 1223 13 HOH HOH . 
U 10 HOH C 24 1224 165 HOH HOH . 
U 10 HOH C 25 1225 110 HOH HOH . 
U 10 HOH C 26 1226 148 HOH HOH . 
U 10 HOH C 27 1227 21 HOH HOH . 
U 10 HOH C 28 1228 59 HOH HOH . 
U 10 HOH C 29 1229 111 HOH HOH . 
U 10 HOH C 30 1230 131 HOH HOH . 
U 10 HOH C 31 1231 178 HOH HOH . 
U 10 HOH C 32 1232 104 HOH HOH . 
U 10 HOH C 33 1233 200 HOH HOH . 
U 10 HOH C 34 1234 26 HOH HOH . 
U 10 HOH C 35 1235 60 HOH HOH . 
U 10 HOH C 36 1236 87 HOH HOH . 
U 10 HOH C 37 1237 134 HOH HOH . 
U 10 HOH C 38 1238 164 HOH HOH . 
U 10 HOH C 39 1239 88 HOH HOH . 
U 10 HOH C 40 1240 130 HOH HOH . 
U 10 HOH C 41 1241 116 HOH HOH . 
U 10 HOH C 42 1242 67 HOH HOH . 
U 10 HOH C 43 1243 29 HOH HOH . 
U 10 HOH C 44 1244 196 HOH HOH . 
U 10 HOH C 45 1245 124 HOH HOH . 
U 10 HOH C 46 1246 83 HOH HOH . 
U 10 HOH C 47 1247 117 HOH HOH . 
U 10 HOH C 48 1248 50 HOH HOH . 
U 10 HOH C 49 1249 138 HOH HOH . 
U 10 HOH C 50 1250 49 HOH HOH . 
U 10 HOH C 51 1251 101 HOH HOH . 
U 10 HOH C 52 1252 24 HOH HOH . 
U 10 HOH C 53 1253 42 HOH HOH . 
U 10 HOH C 54 1254 73 HOH HOH . 
U 10 HOH C 55 1255 98 HOH HOH . 
U 10 HOH C 56 1256 89 HOH HOH . 
U 10 HOH C 57 1257 80 HOH HOH . 
U 10 HOH C 58 1258 47 HOH HOH . 
U 10 HOH C 59 1259 10 HOH HOH . 
U 10 HOH C 60 1260 125 HOH HOH . 
U 10 HOH C 61 1261 30 HOH HOH . 
U 10 HOH C 62 1262 204 HOH HOH . 
U 10 HOH C 63 1263 152 HOH HOH . 
U 10 HOH C 64 1264 113 HOH HOH . 
U 10 HOH C 65 1265 114 HOH HOH . 
U 10 HOH C 66 1266 202 HOH HOH . 
U 10 HOH C 67 1267 176 HOH HOH . 
U 10 HOH C 68 1268 163 HOH HOH . 
U 10 HOH C 69 1269 147 HOH HOH . 
U 10 HOH C 70 1270 97 HOH HOH . 
U 10 HOH C 71 1271 44 HOH HOH . 
U 10 HOH C 72 1272 84 HOH HOH . 
U 10 HOH C 73 1273 75 HOH HOH . 
U 10 HOH C 74 1274 15 HOH HOH . 
U 10 HOH C 75 1275 193 HOH HOH . 
U 10 HOH C 76 1276 197 HOH HOH . 
U 10 HOH C 77 1277 48 HOH HOH . 
U 10 HOH C 78 1278 189 HOH HOH . 
U 10 HOH C 79 1279 102 HOH HOH . 
U 10 HOH C 80 1280 41 HOH HOH . 
U 10 HOH C 81 1281 129 HOH HOH . 
U 10 HOH C 82 1282 121 HOH HOH . 
U 10 HOH C 83 1283 72 HOH HOH . 
U 10 HOH C 84 1284 109 HOH HOH . 
U 10 HOH C 85 1285 31 HOH HOH . 
U 10 HOH C 86 1286 185 HOH HOH . 
U 10 HOH C 87 1287 78 HOH HOH . 
U 10 HOH C 88 1288 198 HOH HOH . 
U 10 HOH C 89 1289 55 HOH HOH . 
U 10 HOH C 90 1290 45 HOH HOH . 
U 10 HOH C 91 1291 156 HOH HOH . 
U 10 HOH C 92 1292 86 HOH HOH . 
U 10 HOH C 93 1293 207 HOH HOH . 
U 10 HOH C 94 1294 22 HOH HOH . 
U 10 HOH C 95 1295 93 HOH HOH . 
U 10 HOH C 96 1296 181 HOH HOH . 
U 10 HOH C 97 1297 38 HOH HOH . 
U 10 HOH C 98 1298 91 HOH HOH . 
U 10 HOH C 99 1299 168 HOH HOH . 
U 10 HOH C 100 1300 227 HOH HOH . 
U 10 HOH C 101 1301 39 HOH HOH . 
U 10 HOH C 102 1302 94 HOH HOH . 
U 10 HOH C 103 1303 17 HOH HOH . 
U 10 HOH C 104 1304 18 HOH HOH . 
U 10 HOH C 105 1305 105 HOH HOH . 
U 10 HOH C 106 1306 57 HOH HOH . 
U 10 HOH C 107 1307 40 HOH HOH . 
U 10 HOH C 108 1308 184 HOH HOH . 
U 10 HOH C 109 1309 177 HOH HOH . 
U 10 HOH C 110 1310 171 HOH HOH . 
U 10 HOH C 111 1311 174 HOH HOH . 
U 10 HOH C 112 1312 150 HOH HOH . 
U 10 HOH C 113 1313 122 HOH HOH . 
U 10 HOH C 114 1314 36 HOH HOH . 
U 10 HOH C 115 1315 169 HOH HOH . 
U 10 HOH C 116 1316 223 HOH HOH . 
U 10 HOH C 117 1317 132 HOH HOH . 
U 10 HOH C 118 1318 118 HOH HOH . 
U 10 HOH C 119 1319 64 HOH HOH . 
U 10 HOH C 120 1320 127 HOH HOH . 
U 10 HOH C 121 1321 151 HOH HOH . 
U 10 HOH C 122 1322 216 HOH HOH . 
U 10 HOH C 123 1323 63 HOH HOH . 
U 10 HOH C 124 1324 74 HOH HOH . 
U 10 HOH C 125 1325 201 HOH HOH . 
U 10 HOH C 126 1326 136 HOH HOH . 
U 10 HOH C 127 1327 112 HOH HOH . 
U 10 HOH C 128 1328 183 HOH HOH . 
U 10 HOH C 129 1329 82 HOH HOH . 
U 10 HOH C 130 1330 11 HOH HOH . 
U 10 HOH C 131 1331 214 HOH HOH . 
U 10 HOH C 132 1332 159 HOH HOH . 
U 10 HOH C 133 1333 158 HOH HOH . 
U 10 HOH C 134 1334 27 HOH HOH . 
U 10 HOH C 135 1335 203 HOH HOH . 
U 10 HOH C 136 1336 99 HOH HOH . 
U 10 HOH C 137 1337 170 HOH HOH . 
U 10 HOH C 138 1338 103 HOH HOH . 
U 10 HOH C 139 1339 92 HOH HOH . 
U 10 HOH C 140 1340 188 HOH HOH . 
U 10 HOH C 141 1341 90 HOH HOH . 
U 10 HOH C 142 1342 43 HOH HOH . 
U 10 HOH C 143 1343 68 HOH HOH . 
U 10 HOH C 144 1344 51 HOH HOH . 
U 10 HOH C 145 1345 12 HOH HOH . 
U 10 HOH C 146 1346 25 HOH HOH . 
U 10 HOH C 147 1347 146 HOH HOH . 
U 10 HOH C 148 1348 108 HOH HOH . 
U 10 HOH C 149 1349 162 HOH HOH . 
U 10 HOH C 150 1350 34 HOH HOH . 
U 10 HOH C 151 1351 46 HOH HOH . 
U 10 HOH C 152 1352 95 HOH HOH . 
U 10 HOH C 153 1353 149 HOH HOH . 
U 10 HOH C 154 1354 144 HOH HOH . 
U 10 HOH C 155 1355 208 HOH HOH . 
U 10 HOH C 156 1356 135 HOH HOH . 
U 10 HOH C 157 1357 210 HOH HOH . 
U 10 HOH C 158 1358 85 HOH HOH . 
U 10 HOH C 159 1359 140 HOH HOH . 
U 10 HOH C 160 1360 205 HOH HOH . 
U 10 HOH C 161 1361 115 HOH HOH . 
U 10 HOH C 162 1362 37 HOH HOH . 
U 10 HOH C 163 1363 166 HOH HOH . 
U 10 HOH C 164 1364 190 HOH HOH . 
U 10 HOH C 165 1365 157 HOH HOH . 
U 10 HOH C 166 1366 187 HOH HOH . 
U 10 HOH C 167 1367 191 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           CL 
_atom_site.label_atom_id         CL 
_atom_site.label_comp_id         CL 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         K 
_atom_site.label_entity_id       7 
_atom_site.Cartn_x               -42.643 
_atom_site.Cartn_y               52.968 
_atom_site.Cartn_z               20.983 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        92.33 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          CL 
_atom_site.auth_comp_id          CL 
_atom_site.auth_seq_id           1103 
_atom_site.auth_asym_id          C 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              30 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    16 
_model_server_stats.query_time_ms           330 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           1 
#