data_5YUA
#
_model_server_result.job_id            aWjhbm4Rd4OmRcqHxRyQTg 
_model_server_result.datetime_utc      '2024-11-27 17:27:18' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5yua 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":1302}' 
#
_entry.id    5YUA 
#
_exptl.entry_id    5YUA 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              510.615 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            DODECYL-BETA-D-MALTOSIDE 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5YUA 
_cell.length_a            126.45 
_cell.length_b            126.45 
_cell.length_c            201.658 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5YUA 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        97 
_symmetry.space_group_name_Hall    'I 4 2' 
_symmetry.space_group_name_H-M     'I 4 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2,3,4 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 
3 'crystal symmetry operation' 3_555 -y,x,z 0 -1 0 1 0 0 0 0 1 0 0 0 
4 'crystal symmetry operation' 4_555 y,-x,z 0 1 0 -1 0 0 0 0 1 0 0 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 D N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 C C12 LMT . A LMT 1302 1_555 H C34 PX4 . A PX4 1307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.495 ? 
covale ? covale2 J C21 PX4 . A PX4 1309 1_555 K C36 PX4 . A PX4 1310 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.494 ? 
#
_chem_comp.formula           'C24 H46 O11' 
_chem_comp.formula_weight    510.615 
_chem_comp.id                LMT 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              DODECYL-BETA-D-MALTOSIDE 
_chem_comp.type              d-saccharide 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1B C2B LMT sing 286 n n 
C1B O1B LMT sing 287 n n 
C1B O5B LMT sing 288 n n 
C1B H1B LMT sing 289 n n 
C2B C3B LMT sing 290 n n 
C2B O2B LMT sing 291 n n 
C2B H2B LMT sing 292 n n 
C3B C4B LMT sing 293 n n 
C3B O3B LMT sing 294 n n 
C3B H3B LMT sing 295 n n 
C4B C5B LMT sing 296 n n 
C4B O4' LMT sing 297 n n 
C4B H4B LMT sing 298 n n 
C5B C6B LMT sing 299 n n 
C5B O5B LMT sing 300 n n 
C5B H5B LMT sing 301 n n 
C6B O6B LMT sing 302 n n 
C6B "H6'2" LMT sing 303 n n 
C6B "H6'1" LMT sing 304 n n 
O1B C4' LMT sing 305 n n 
O2B H2O1 LMT sing 306 n n 
O3B H3O1 LMT sing 307 n n 
O4' H4O1 LMT sing 308 n n 
O6B H6B LMT sing 309 n n 
C1' C2' LMT sing 310 n n 
C1' O1' LMT sing 311 n n 
C1' O5' LMT sing 312 n n 
C1' H1' LMT sing 313 n n 
C2' C3' LMT sing 314 n n 
C2' O2' LMT sing 315 n n 
C2' H2' LMT sing 316 n n 
C3' C4' LMT sing 317 n n 
C3' O3' LMT sing 318 n n 
C3' H3' LMT sing 319 n n 
C4' C5' LMT sing 320 n n 
C4' H4' LMT sing 321 n n 
C5' C6' LMT sing 322 n n 
C5' O5' LMT sing 323 n n 
C5' H5' LMT sing 324 n n 
C6' O6' LMT sing 325 n n 
C6' H6D LMT sing 326 n n 
C6' H6E LMT sing 327 n n 
O1' C1 LMT sing 328 n n 
O2' H2O2 LMT sing 329 n n 
O3' H3O2 LMT sing 330 n n 
O6' H6' LMT sing 331 n n 
C1 C2 LMT sing 332 n n 
C1 H12 LMT sing 333 n n 
C1 H11 LMT sing 334 n n 
C2 C3 LMT sing 335 n n 
C2 H22 LMT sing 336 n n 
C2 H21 LMT sing 337 n n 
C3 C4 LMT sing 338 n n 
C3 H32 LMT sing 339 n n 
C3 H31 LMT sing 340 n n 
C4 C5 LMT sing 341 n n 
C4 H42 LMT sing 342 n n 
C4 H41 LMT sing 343 n n 
C5 C6 LMT sing 344 n n 
C5 H52 LMT sing 345 n n 
C5 H51 LMT sing 346 n n 
C6 C7 LMT sing 347 n n 
C6 H62 LMT sing 348 n n 
C6 H61 LMT sing 349 n n 
C7 C8 LMT sing 350 n n 
C7 H72 LMT sing 351 n n 
C7 H71 LMT sing 352 n n 
C8 C9 LMT sing 353 n n 
C8 H82 LMT sing 354 n n 
C8 H81 LMT sing 355 n n 
C9 C10 LMT sing 356 n n 
C9 H92 LMT sing 357 n n 
C9 H91 LMT sing 358 n n 
C10 C11 LMT sing 359 n n 
C10 H102 LMT sing 360 n n 
C10 H101 LMT sing 361 n n 
C11 C12 LMT sing 362 n n 
C11 H112 LMT sing 363 n n 
C11 H111 LMT sing 364 n n 
C12 H123 LMT sing 365 n n 
C12 H122 LMT sing 366 n n 
C12 H121 LMT sing 367 n n 
#
_atom_sites.entry_id                     5YUA 
_atom_sites.fract_transf_matrix[1][1]    0.007908 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007908 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004959 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 CA A 1 1301 1301 CA CA . 
C 3 LMT A 1 1302 1302 LMT LMT . 
D 3 LMT A 1 1303 1303 LMT LMT . 
E 4 1N7 A 1 1304 1304 1N7 1N7 . 
F 5 PX4 A 1 1305 1305 PX4 PX4 . 
G 5 PX4 A 1 1306 1306 PX4 PX4 . 
H 5 PX4 A 1 1307 1307 PX4 PX4 . 
I 5 PX4 A 1 1308 1308 PX4 PX4 . 
J 5 PX4 A 1 1309 1309 PX4 PX4 . 
K 5 PX4 A 1 1310 1310 PX4 PX4 . 
L 6 HOH A 1 1401 1401 HOH HOH . 
L 6 HOH A 2 1402 1402 HOH HOH . 
L 6 HOH A 3 1403 1403 HOH HOH . 
L 6 HOH A 4 1404 1404 HOH HOH . 
L 6 HOH A 5 1405 1405 HOH HOH . 
L 6 HOH A 6 1406 1407 HOH HOH . 
L 6 HOH A 7 1407 1408 HOH HOH . 
L 6 HOH A 8 1408 1409 HOH HOH . 
L 6 HOH A 9 1409 1410 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1B LMT . . . C 3 -2.54 -5.062 24.422 1 152.33 ? C1B LMT 1302 A 1 
HETATM 2 C C2B LMT . . . C 3 -2.132 -3.763 23.726 1 163.44 ? C2B LMT 1302 A 1 
HETATM 3 C C3B LMT . . . C 3 -1.602 -2.752 24.777 1 166.55 ? C3B LMT 1302 A 1 
HETATM 4 C C4B LMT . . . C 3 -2.594 -2.568 25.986 1 167.95 ? C4B LMT 1302 A 1 
HETATM 5 C C5B LMT . . . C 3 -3.048 -3.966 26.469 1 156.26 ? C5B LMT 1302 A 1 
HETATM 6 C C6B LMT . . . C 3 -4.058 -3.826 27.607 1 142.09 ? C6B LMT 1302 A 1 
HETATM 7 O O1B LMT . . . C 3 -1.346 -5.521 24.973 1 147.32 ? O1B LMT 1302 A 1 
HETATM 8 O O2B LMT . . . C 3 -1.151 -4.095 22.826 1 169.23 ? O2B LMT 1302 A 1 
HETATM 9 O O3B LMT . . . C 3 -1.202 -1.574 24.197 1 162.23 ? O3B LMT 1302 A 1 
HETATM 10 O O4' LMT . . . C 3 -2.002 -1.928 27.067 1 168.93 ? O4' LMT 1302 A 1 
HETATM 11 O O5B LMT . . . C 3 -3.518 -4.809 25.412 1 152.86 ? O5B LMT 1302 A 1 
HETATM 12 O O6B LMT . . . C 3 -3.655 -2.846 28.492 1 137.67 ? O6B LMT 1302 A 1 
HETATM 13 C C1' LMT . . . C 3 1.102 -8.661 25.175 1 145.93 ? C1' LMT 1302 A 1 
HETATM 14 C C2' LMT . . . C 3 0.435 -7.964 23.973 1 147.63 ? C2' LMT 1302 A 1 
HETATM 15 C C3' LMT . . . C 3 -1.063 -7.764 24.311 1 149.13 ? C3' LMT 1302 A 1 
HETATM 16 C C4' LMT . . . C 3 -1.29 -6.813 25.5 1 154.36 ? C4' LMT 1302 A 1 
HETATM 17 C C5' LMT . . . C 3 -0.031 -6.923 26.42 1 169.15 ? C5' LMT 1302 A 1 
HETATM 18 C C6' LMT . . . C 3 -0.201 -6.346 27.841 1 157.24 ? C6' LMT 1302 A 1 
HETATM 19 O O1' LMT . . . C 3 0.995 -10.015 24.964 1 107.33 ? O1' LMT 1302 A 1 
HETATM 20 O O2' LMT . . . C 3 1.072 -6.745 23.687 1 146.15 ? O2' LMT 1302 A 1 
HETATM 21 O O3' LMT . . . C 3 -1.594 -8.986 24.618 1 150.77 ? O3' LMT 1302 A 1 
HETATM 22 O O5' LMT . . . C 3 0.449 -8.28 26.422 1 175.15 ? O5' LMT 1302 A 1 
HETATM 23 O O6' LMT . . . C 3 0.269 -5.041 27.911 1 135.89 ? O6' LMT 1302 A 1 
HETATM 24 C C1 LMT . . . C 3 0.662 -10.83 26.069 1 94.66 ? C1 LMT 1302 A 1 
HETATM 25 C C2 LMT . . . C 3 1.976 -11.388 26.545 1 95.71 ? C2 LMT 1302 A 1 
HETATM 26 C C3 LMT . . . C 3 2.383 -11.108 27.979 1 91.88 ? C3 LMT 1302 A 1 
HETATM 27 C C4 LMT . . . C 3 1.736 -12.156 28.872 1 87.98 ? C4 LMT 1302 A 1 
HETATM 28 C C5 LMT . . . C 3 2.688 -12.801 29.837 1 76.88 ? C5 LMT 1302 A 1 
HETATM 29 C C6 LMT . . . C 3 2.632 -14.308 29.768 1 75.2 ? C6 LMT 1302 A 1 
HETATM 30 C C7 LMT . . . C 3 3.776 -14.906 30.554 1 74.31 ? C7 LMT 1302 A 1 
HETATM 31 C C8 LMT . . . C 3 4.815 -15.344 29.601 1 71.11 ? C8 LMT 1302 A 1 
HETATM 32 C C9 LMT . . . C 3 6.032 -15.873 30.239 1 69.55 ? C9 LMT 1302 A 1 
HETATM 33 C C10 LMT . . . C 3 7.109 -15.363 29.358 1 78.19 ? C10 LMT 1302 A 1 
HETATM 34 C C11 LMT . . . C 3 8.183 -16.377 29.162 1 94.16 ? C11 LMT 1302 A 1 
HETATM 35 C C12 LMT . . . C 3 9.132 -16.513 30.33 1 112.71 ? C12 LMT 1302 A 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           232 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           35 
#