data_5YUB # _model_server_result.job_id rwqVWb0rj_KGeQ5tGkcTKA _model_server_result.datetime_utc '2024-11-23 23:00:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5yub # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1302}' # _entry.id 5YUB # _exptl.entry_id 5YUB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 510.615 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description DODECYL-BETA-D-MALTOSIDE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5YUB _cell.length_a 127.04 _cell.length_b 127.04 _cell.length_c 202.64 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5YUB _symmetry.cell_setting ? _symmetry.Int_Tables_number 97 _symmetry.space_group_name_Hall 'I 4 2' _symmetry.space_group_name_H-M 'I 4 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -y,x,z 0 -1 0 1 0 0 0 0 1 0 0 0 4 'crystal symmetry operation' 4_555 y,-x,z 0 1 0 -1 0 0 0 0 1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C24 H46 O11' _chem_comp.formula_weight 510.615 _chem_comp.id LMT _chem_comp.mon_nstd_flag . _chem_comp.name DODECYL-BETA-D-MALTOSIDE _chem_comp.type d-saccharide _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1B C2B LMT sing 284 n n C1B O1B LMT sing 285 n n C1B O5B LMT sing 286 n n C1B H1B LMT sing 287 n n C2B C3B LMT sing 288 n n C2B O2B LMT sing 289 n n C2B H2B LMT sing 290 n n C3B C4B LMT sing 291 n n C3B O3B LMT sing 292 n n C3B H3B LMT sing 293 n n C4B C5B LMT sing 294 n n C4B O4' LMT sing 295 n n C4B H4B LMT sing 296 n n C5B C6B LMT sing 297 n n C5B O5B LMT sing 298 n n C5B H5B LMT sing 299 n n C6B O6B LMT sing 300 n n C6B "H6'2" LMT sing 301 n n C6B "H6'1" LMT sing 302 n n O1B C4' LMT sing 303 n n O2B H2O1 LMT sing 304 n n O3B H3O1 LMT sing 305 n n O4' H4O1 LMT sing 306 n n O6B H6B LMT sing 307 n n C1' C2' LMT sing 308 n n C1' O1' LMT sing 309 n n C1' O5' LMT sing 310 n n C1' H1' LMT sing 311 n n C2' C3' LMT sing 312 n n C2' O2' LMT sing 313 n n C2' H2' LMT sing 314 n n C3' C4' LMT sing 315 n n C3' O3' LMT sing 316 n n C3' H3' LMT sing 317 n n C4' C5' LMT sing 318 n n C4' H4' LMT sing 319 n n C5' C6' LMT sing 320 n n C5' O5' LMT sing 321 n n C5' H5' LMT sing 322 n n C6' O6' LMT sing 323 n n C6' H6D LMT sing 324 n n C6' H6E LMT sing 325 n n O1' C1 LMT sing 326 n n O2' H2O2 LMT sing 327 n n O3' H3O2 LMT sing 328 n n O6' H6' LMT sing 329 n n C1 C2 LMT sing 330 n n C1 H12 LMT sing 331 n n C1 H11 LMT sing 332 n n C2 C3 LMT sing 333 n n C2 H22 LMT sing 334 n n C2 H21 LMT sing 335 n n C3 C4 LMT sing 336 n n C3 H32 LMT sing 337 n n C3 H31 LMT sing 338 n n C4 C5 LMT sing 339 n n C4 H42 LMT sing 340 n n C4 H41 LMT sing 341 n n C5 C6 LMT sing 342 n n C5 H52 LMT sing 343 n n C5 H51 LMT sing 344 n n C6 C7 LMT sing 345 n n C6 H62 LMT sing 346 n n C6 H61 LMT sing 347 n n C7 C8 LMT sing 348 n n C7 H72 LMT sing 349 n n C7 H71 LMT sing 350 n n C8 C9 LMT sing 351 n n C8 H82 LMT sing 352 n n C8 H81 LMT sing 353 n n C9 C10 LMT sing 354 n n C9 H92 LMT sing 355 n n C9 H91 LMT sing 356 n n C10 C11 LMT sing 357 n n C10 H102 LMT sing 358 n n C10 H101 LMT sing 359 n n C11 C12 LMT sing 360 n n C11 H112 LMT sing 361 n n C11 H111 LMT sing 362 n n C12 H123 LMT sing 363 n n C12 H122 LMT sing 364 n n C12 H121 LMT sing 365 n n # _atom_sites.entry_id 5YUB _atom_sites.fract_transf_matrix[1][1] 0.007872 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007872 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004935 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA A 1 1301 1301 CA CA . C 3 LMT A 1 1302 1302 LMT LMT . D 4 1N7 A 1 1303 1303 1N7 1N7 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1B LMT . . . C 3 -1.633 -5.764 24.567 1 123.17 ? C1B LMT 1302 A 1 HETATM 2 C C2B LMT . . . C 3 -1.174 -4.327 24.121 1 124.95 ? C2B LMT 1302 A 1 HETATM 3 C C3B LMT . . . C 3 -1.969 -3.117 24.73 1 126.59 ? C3B LMT 1302 A 1 HETATM 4 C C4B LMT . . . C 3 -3.132 -3.599 25.638 1 126.6 ? C4B LMT 1302 A 1 HETATM 5 C C5B LMT . . . C 3 -2.477 -4.658 26.483 1 124.27 ? C5B LMT 1302 A 1 HETATM 6 C C6B LMT . . . C 3 -3.21 -4.77 27.826 1 120.7 ? C6B LMT 1302 A 1 HETATM 7 O O1B LMT . . . C 3 -0.5 -6.616 24.72 1 122.34 ? O1B LMT 1302 A 1 HETATM 8 O O2B LMT . . . C 3 0.134 -4.24 24.503 1 125.21 ? O2B LMT 1302 A 1 HETATM 9 O O3B LMT . . . C 3 -2.33 -2.177 23.78 1 126.48 ? O3B LMT 1302 A 1 HETATM 10 O O4' LMT . . . C 3 -3.631 -2.554 26.46 1 128.67 ? O4' LMT 1302 A 1 HETATM 11 O O5B LMT . . . C 3 -2.44 -5.821 25.732 1 124.05 ? O5B LMT 1302 A 1 HETATM 12 O O6B LMT . . . C 3 -2.327 -4.718 28.884 1 119.68 ? O6B LMT 1302 A 1 HETATM 13 C C1' LMT . . . C 3 1.393 -9.907 26.067 1 119.15 ? C1' LMT 1302 A 1 HETATM 14 C C2' LMT . . . C 3 0.918 -9.858 24.615 1 119.07 ? C2' LMT 1302 A 1 HETATM 15 C C3' LMT . . . C 3 -0.46 -9.077 24.467 1 122.14 ? C3' LMT 1302 A 1 HETATM 16 C C4' LMT . . . C 3 -0.702 -7.85 25.39 1 124.41 ? C4' LMT 1302 A 1 HETATM 17 C C5' LMT . . . C 3 0.249 -8.02 26.591 1 131.27 ? C5' LMT 1302 A 1 HETATM 18 C C6' LMT . . . C 3 -0.156 -7.326 27.879 1 134.33 ? C6' LMT 1302 A 1 HETATM 19 O O1' LMT . . . C 3 1.662 -11.197 26.48 1 102.4 ? O1' LMT 1302 A 1 HETATM 20 O O2' LMT . . . C 3 1.897 -9.279 23.797 1 116.4 ? O2' LMT 1302 A 1 HETATM 21 O O3' LMT . . . C 3 -1.526 -9.939 24.613 1 121.86 ? O3' LMT 1302 A 1 HETATM 22 O O5' LMT . . . C 3 0.359 -9.391 26.863 1 131.63 ? O5' LMT 1302 A 1 HETATM 23 O O6' LMT . . . C 3 0.518 -6.126 27.954 1 136.94 ? O6' LMT 1302 A 1 HETATM 24 C C1 LMT . . . C 3 1.441 -11.456 27.861 1 90.39 ? C1 LMT 1302 A 1 HETATM 25 C C2 LMT . . . C 3 2.764 -11.884 28.436 1 79.53 ? C2 LMT 1302 A 1 HETATM 26 C C3 LMT . . . C 3 2.728 -12.628 29.735 1 72.41 ? C3 LMT 1302 A 1 HETATM 27 C C4 LMT . . . C 3 2.801 -14.127 29.45 1 65.77 ? C4 LMT 1302 A 1 HETATM 28 C C5 LMT . . . C 3 3.822 -14.855 30.29 1 59.4 ? C5 LMT 1302 A 1 HETATM 29 C C6 LMT . . . C 3 5.022 -15.319 29.493 1 56.33 ? C6 LMT 1302 A 1 HETATM 30 C C7 LMT . . . C 3 6.098 -15.915 30.377 1 55.48 ? C7 LMT 1302 A 1 HETATM 31 C C8 LMT . . . C 3 7.409 -15.922 29.651 1 57.32 ? C8 LMT 1302 A 1 HETATM 32 C C9 LMT . . . C 3 8.533 -16.623 30.377 1 60.19 ? C9 LMT 1302 A 1 HETATM 33 C C10 LMT . . . C 3 9.562 -15.583 30.776 1 62.91 ? C10 LMT 1302 A 1 HETATM 34 C C11 LMT . . . C 3 10.888 -16.135 31.239 1 59.27 ? C11 LMT 1302 A 1 HETATM 35 C C12 LMT . . . C 3 11.793 -15.03 31.732 1 55.65 ? C12 LMT 1302 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 284 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 35 #