data_5YUB # _model_server_result.job_id hQSpsVIJCPIBztlQng8DYw _model_server_result.datetime_utc '2024-11-23 22:40:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5yub # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1303}' # _entry.id 5YUB # _exptl.entry_id 5YUB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 631.884 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description CHAPSO _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5YUB _cell.length_a 127.04 _cell.length_b 127.04 _cell.length_c 202.64 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5YUB _symmetry.cell_setting ? _symmetry.Int_Tables_number 97 _symmetry.space_group_name_Hall 'I 4 2' _symmetry.space_group_name_H-M 'I 4 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -y,x,z 0 -1 0 1 0 0 0 0 1 0 0 0 4 'crystal symmetry operation' 4_555 y,-x,z 0 1 0 -1 0 0 0 0 1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C32 H59 N2 O8 S 1' _chem_comp.formula_weight 631.884 _chem_comp.id 1N7 _chem_comp.mon_nstd_flag . _chem_comp.name CHAPSO _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 2-hydroxy-N,N-dimethyl-3-sulfo-N-(3-{[(3beta,5beta,7beta,12beta)-3,7,12-trihydroxy-24-oxocholan-24-yl]amino}propyl)propan-1-aminium # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C24 1N7 sing 1 n n C24 O1 1N7 doub 2 n n C24 C23 1N7 sing 3 n n C23 C22 1N7 sing 4 n n O2 C13 1N7 sing 5 n n O4 C4 1N7 sing 6 n n O3 C17 1N7 sing 7 n n C22 C20 1N7 sing 8 n n C21 C20 1N7 sing 9 n n C9 C8 1N7 sing 10 n n C9 C20 1N7 sing 11 n n C9 C5 1N7 sing 12 n n C8 C7 1N7 sing 13 n n C13 C14 1N7 sing 14 n n C13 C12 1N7 sing 15 n n C14 C15 1N7 sing 16 n n C6 C7 1N7 sing 17 n n C6 C5 1N7 sing 18 n n C6 C18 1N7 sing 19 n n C4 C5 1N7 sing 20 n n C4 C3 1N7 sing 21 n n C12 C1 1N7 sing 22 n n C5 C10 1N7 sing 23 n n C17 C18 1N7 sing 24 n n C17 C16 1N7 sing 25 n n C19 C3 1N7 sing 26 n n C19 C18 1N7 sing 27 n n C19 C2 1N7 sing 28 n n C15 C16 1N7 sing 29 n n C15 C2 1N7 sing 30 n n C1 C2 1N7 sing 31 n n C2 C11 1N7 sing 32 n n C1 H1 1N7 sing 33 n n C1 H2 1N7 sing 34 n n C3 H3 1N7 sing 35 n n C3 H4 1N7 sing 36 n n C4 H5 1N7 sing 37 n n C6 H6 1N7 sing 38 n n C7 H7 1N7 sing 39 n n C7 H8 1N7 sing 40 n n C8 H9 1N7 sing 41 n n C8 H10 1N7 sing 42 n n C9 H11 1N7 sing 43 n n C10 H12 1N7 sing 44 n n C10 H13 1N7 sing 45 n n C10 H14 1N7 sing 46 n n C11 H15 1N7 sing 47 n n C11 H16 1N7 sing 48 n n C11 H17 1N7 sing 49 n n C12 H18 1N7 sing 50 n n C12 H19 1N7 sing 51 n n C13 H20 1N7 sing 52 n n C14 H21 1N7 sing 53 n n C14 H22 1N7 sing 54 n n C15 H23 1N7 sing 55 n n C16 H24 1N7 sing 56 n n C16 H25 1N7 sing 57 n n C17 H26 1N7 sing 58 n n C18 H27 1N7 sing 59 n n C19 H28 1N7 sing 60 n n C20 H29 1N7 sing 61 n n C21 H30 1N7 sing 62 n n C21 H31 1N7 sing 63 n n C21 H32 1N7 sing 64 n n C22 H33 1N7 sing 65 n n C22 H34 1N7 sing 66 n n C23 H35 1N7 sing 67 n n C23 H36 1N7 sing 68 n n N1 H41 1N7 sing 69 n n O2 H43 1N7 sing 70 n n O3 H44 1N7 sing 71 n n O4 H45 1N7 sing 72 n n N1 C25 1N7 sing 73 n n C25 C26 1N7 sing 74 n n C26 C27 1N7 sing 75 n n C27 N2 1N7 sing 76 n n N2 C28 1N7 sing 77 n n N2 C29 1N7 sing 78 n n N2 C30 1N7 sing 79 n n C28 C31 1N7 sing 80 n n C31 C32 1N7 sing 81 n n C31 O5 1N7 sing 82 n n C32 S1 1N7 sing 83 n n S1 O7 1N7 doub 84 n n S1 O8 1N7 sing 85 n n S1 O6 1N7 doub 86 n n C25 H37 1N7 sing 87 n n C25 H38 1N7 sing 88 n n C26 H39 1N7 sing 89 n n C26 H40 1N7 sing 90 n n C27 H42 1N7 sing 91 n n C27 H46 1N7 sing 92 n n C28 H47 1N7 sing 93 n n C28 H48 1N7 sing 94 n n C29 H49 1N7 sing 95 n n C29 H50 1N7 sing 96 n n C29 H51 1N7 sing 97 n n C30 H52 1N7 sing 98 n n C30 H53 1N7 sing 99 n n C30 H54 1N7 sing 100 n n C31 H55 1N7 sing 101 n n C32 H56 1N7 sing 102 n n C32 H57 1N7 sing 103 n n O5 H58 1N7 sing 104 n n O8 H59 1N7 sing 105 n n # _atom_sites.entry_id 5YUB _atom_sites.fract_transf_matrix[1][1] 0.007872 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007872 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004935 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA A 1 1301 1301 CA CA . C 3 LMT A 1 1302 1302 LMT LMT . D 4 1N7 A 1 1303 1303 1N7 1N7 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 1N7 . . . D 4 23.792 -3.37 36.527 1 78.79 ? C1 1N7 1303 A 1 HETATM 2 C C2 1N7 . . . D 4 23.575 -3.826 37.981 1 84.71 ? C2 1N7 1303 A 1 HETATM 3 C C3 1N7 . . . D 4 21.556 -2.604 39.131 1 83.51 ? C3 1N7 1303 A 1 HETATM 4 C C4 1N7 . . . D 4 21.09 -2.717 40.597 1 79.06 ? C4 1N7 1303 A 1 HETATM 5 C C5 1N7 . . . D 4 21.868 -1.825 41.581 1 79.71 ? C5 1N7 1303 A 1 HETATM 6 C C6 1N7 . . . D 4 23.142 -1.379 40.885 1 84.21 ? C6 1N7 1303 A 1 HETATM 7 C C7 1N7 . . . D 4 23.821 -0.517 41.929 1 81.12 ? C7 1N7 1303 A 1 HETATM 8 C C8 1N7 . . . D 4 22.621 0.261 42.513 1 76.76 ? C8 1N7 1303 A 1 HETATM 9 C C9 1N7 . . . D 4 21.338 -0.412 41.95 1 75.68 ? C9 1N7 1303 A 1 HETATM 10 C C10 1N7 . . . D 4 22.159 -2.63 42.859 1 82.49 ? C10 1N7 1303 A 1 HETATM 11 C C11 1N7 . . . D 4 22.563 -4.985 37.985 1 83.78 ? C11 1N7 1303 A 1 HETATM 12 C C12 1N7 . . . D 4 24.507 -4.38 35.64 1 73.54 ? C12 1N7 1303 A 1 HETATM 13 C C13 1N7 . . . D 4 24.821 -5.653 36.383 1 74.61 ? C13 1N7 1303 A 1 HETATM 14 C C14 1N7 . . . D 4 25.623 -5.329 37.613 1 78.99 ? C14 1N7 1303 A 1 HETATM 15 C C15 1N7 . . . D 4 24.939 -4.297 38.525 1 85.55 ? C15 1N7 1303 A 1 HETATM 16 C C16 1N7 . . . D 4 25.869 -3.112 38.827 1 94.24 ? C16 1N7 1303 A 1 HETATM 17 C C17 1N7 . . . D 4 25.331 -2.246 39.962 1 103.95 ? C17 1N7 1303 A 1 HETATM 18 C C18 1N7 . . . D 4 23.841 -2.5 40.185 1 91.73 ? C18 1N7 1303 A 1 HETATM 19 C C19 1N7 . . . D 4 23.072 -2.647 38.864 1 87.08 ? C19 1N7 1303 A 1 HETATM 20 C C20 1N7 . . . D 4 20.129 -0.243 42.883 1 71.13 ? C20 1N7 1303 A 1 HETATM 21 C C21 1N7 . . . D 4 20.458 0.534 44.152 1 65.71 ? C21 1N7 1303 A 1 HETATM 22 C C22 1N7 . . . D 4 19.528 -1.604 43.241 1 74.35 ? C22 1N7 1303 A 1 HETATM 23 C C23 1N7 . . . D 4 19.68 -1.954 44.699 1 77.52 ? C23 1N7 1303 A 1 HETATM 24 C C24 1N7 . . . D 4 18.405 -1.649 45.446 1 78.6 ? C24 1N7 1303 A 1 HETATM 25 N N1 1N7 . . . D 4 17.348 -1.321 44.701 1 75.06 ? N1 1N7 1303 A 1 HETATM 26 O O1 1N7 . . . D 4 18.347 -1.707 46.669 1 80.68 ? O1 1N7 1303 A 1 HETATM 27 O O2 1N7 . . . D 4 25.558 -6.554 35.535 1 70.1 ? O2 1N7 1303 A 1 HETATM 28 O O3 1N7 . . . D 4 25.567 -0.844 39.713 1 119.69 ? O3 1N7 1303 A 1 HETATM 29 O O4 1N7 . . . D 4 19.686 -2.412 40.665 1 80.1 ? O4 1N7 1303 A 1 HETATM 30 C C25 1N7 . . . D 4 16.557 -2.277 43.943 1 72.51 ? C25 1N7 1303 A 1 # _model_server_stats.io_time_ms 50 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 332 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 30 #