data_5YUK # _model_server_result.job_id lcKWa5D7ZuyvsfmG0H-xcQ _model_server_result.datetime_utc '2024-11-30 00:23:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5yuk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":302}' # _entry.id 5YUK # _exptl.entry_id 5YUK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 104.19 _cell.angle_gamma 90 _cell.entry_id 5YUK _cell.length_a 42.22 _cell.length_b 41.244 _cell.length_c 71.963 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5YUK _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 94 A HIS 94 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? metalc ? metalc2 A NE2 HIS 96 A HIS 96 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.082 ? metalc ? metalc3 A ND1 HIS 119 A HIS 119 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? metalc ? metalc4 B ZN ZN . A ZN 301 1_555 D O HOH . A HOH 437 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.939 ? metalc ? metalc5 B ZN ZN . A ZN 301 1_555 D O HOH . A HOH 559 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.325 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 5YUK _atom_sites.fract_transf_matrix[1][1] 0.023685 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.005987 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.024246 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014333 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 301 301 ZN ZN . C 3 GOL A 1 302 302 GOL GOL . D 4 HOH A 1 401 402 HOH HOH . D 4 HOH A 2 402 403 HOH HOH . D 4 HOH A 3 403 407 HOH HOH . D 4 HOH A 4 404 406 HOH HOH . D 4 HOH A 5 405 408 HOH HOH . D 4 HOH A 6 406 424 HOH HOH . D 4 HOH A 7 407 421 HOH HOH . D 4 HOH A 8 408 416 HOH HOH . D 4 HOH A 9 409 412 HOH HOH . D 4 HOH A 10 410 413 HOH HOH . D 4 HOH A 11 411 410 HOH HOH . D 4 HOH A 12 412 415 HOH HOH . D 4 HOH A 13 413 430 HOH HOH . D 4 HOH A 14 414 422 HOH HOH . D 4 HOH A 15 415 401 HOH HOH . D 4 HOH A 16 416 436 HOH HOH . D 4 HOH A 17 417 442 HOH HOH . D 4 HOH A 18 418 426 HOH HOH . D 4 HOH A 19 419 429 HOH HOH . D 4 HOH A 20 420 425 HOH HOH . D 4 HOH A 21 421 434 HOH HOH . D 4 HOH A 22 422 433 HOH HOH . D 4 HOH A 23 423 431 HOH HOH . D 4 HOH A 24 424 432 HOH HOH . D 4 HOH A 25 425 419 HOH HOH . D 4 HOH A 26 426 439 HOH HOH . D 4 HOH A 27 427 456 HOH HOH . D 4 HOH A 28 428 440 HOH HOH . D 4 HOH A 29 429 441 HOH HOH . D 4 HOH A 30 430 454 HOH HOH . D 4 HOH A 31 431 437 HOH HOH . D 4 HOH A 32 432 448 HOH HOH . D 4 HOH A 33 433 463 HOH HOH . D 4 HOH A 34 434 445 HOH HOH . D 4 HOH A 35 435 451 HOH HOH . D 4 HOH A 36 436 449 HOH HOH . D 4 HOH A 37 437 455 HOH HOH . D 4 HOH A 38 438 623 HOH HOH . D 4 HOH A 39 439 446 HOH HOH . D 4 HOH A 40 440 467 HOH HOH . D 4 HOH A 41 441 479 HOH HOH . D 4 HOH A 42 442 459 HOH HOH . D 4 HOH A 43 443 465 HOH HOH . D 4 HOH A 44 444 466 HOH HOH . D 4 HOH A 45 445 447 HOH HOH . D 4 HOH A 46 446 470 HOH HOH . D 4 HOH A 47 447 485 HOH HOH . D 4 HOH A 48 448 489 HOH HOH . D 4 HOH A 49 449 477 HOH HOH . D 4 HOH A 50 450 490 HOH HOH . D 4 HOH A 51 451 460 HOH HOH . D 4 HOH A 52 452 517 HOH HOH . D 4 HOH A 53 453 759 HOH HOH . D 4 HOH A 54 454 478 HOH HOH . D 4 HOH A 55 455 464 HOH HOH . D 4 HOH A 56 456 529 HOH HOH . D 4 HOH A 57 457 438 HOH HOH . D 4 HOH A 58 458 500 HOH HOH . D 4 HOH A 59 459 554 HOH HOH . D 4 HOH A 60 460 474 HOH HOH . D 4 HOH A 61 461 476 HOH HOH . D 4 HOH A 62 462 468 HOH HOH . D 4 HOH A 63 463 482 HOH HOH . D 4 HOH A 64 464 483 HOH HOH . D 4 HOH A 65 465 488 HOH HOH . D 4 HOH A 66 466 497 HOH HOH . D 4 HOH A 67 467 498 HOH HOH . D 4 HOH A 68 468 539 HOH HOH . D 4 HOH A 69 469 509 HOH HOH . D 4 HOH A 70 470 486 HOH HOH . D 4 HOH A 71 471 499 HOH HOH . D 4 HOH A 72 472 501 HOH HOH . D 4 HOH A 73 473 492 HOH HOH . D 4 HOH A 74 474 487 HOH HOH . D 4 HOH A 75 475 484 HOH HOH . D 4 HOH A 76 476 518 HOH HOH . D 4 HOH A 77 477 480 HOH HOH . D 4 HOH A 78 478 491 HOH HOH . D 4 HOH A 79 479 515 HOH HOH . D 4 HOH A 80 480 506 HOH HOH . D 4 HOH A 81 481 473 HOH HOH . D 4 HOH A 82 482 493 HOH HOH . D 4 HOH A 83 483 514 HOH HOH . D 4 HOH A 84 484 523 HOH HOH . D 4 HOH A 85 485 503 HOH HOH . D 4 HOH A 86 486 516 HOH HOH . D 4 HOH A 87 487 535 HOH HOH . D 4 HOH A 88 488 496 HOH HOH . D 4 HOH A 89 489 507 HOH HOH . D 4 HOH A 90 490 504 HOH HOH . D 4 HOH A 91 491 528 HOH HOH . D 4 HOH A 92 492 508 HOH HOH . D 4 HOH A 93 493 495 HOH HOH . D 4 HOH A 94 494 546 HOH HOH . D 4 HOH A 95 495 544 HOH HOH . D 4 HOH A 96 496 543 HOH HOH . D 4 HOH A 97 497 545 HOH HOH . D 4 HOH A 98 498 547 HOH HOH . D 4 HOH A 99 499 494 HOH HOH . D 4 HOH A 100 500 534 HOH HOH . D 4 HOH A 101 501 526 HOH HOH . D 4 HOH A 102 502 537 HOH HOH . D 4 HOH A 103 503 552 HOH HOH . D 4 HOH A 104 504 519 HOH HOH . D 4 HOH A 105 505 558 HOH HOH . D 4 HOH A 106 506 560 HOH HOH . D 4 HOH A 107 507 541 HOH HOH . D 4 HOH A 108 508 513 HOH HOH . D 4 HOH A 109 509 469 HOH HOH . D 4 HOH A 110 510 576 HOH HOH . D 4 HOH A 111 511 542 HOH HOH . D 4 HOH A 112 512 549 HOH HOH . D 4 HOH A 113 513 551 HOH HOH . D 4 HOH A 114 514 565 HOH HOH . D 4 HOH A 115 515 573 HOH HOH . D 4 HOH A 116 516 538 HOH HOH . D 4 HOH A 117 517 548 HOH HOH . D 4 HOH A 118 518 510 HOH HOH . D 4 HOH A 119 519 550 HOH HOH . D 4 HOH A 120 520 553 HOH HOH . D 4 HOH A 121 521 563 HOH HOH . D 4 HOH A 122 522 580 HOH HOH . D 4 HOH A 123 523 570 HOH HOH . D 4 HOH A 124 524 556 HOH HOH . D 4 HOH A 125 525 540 HOH HOH . D 4 HOH A 126 526 564 HOH HOH . D 4 HOH A 127 527 577 HOH HOH . D 4 HOH A 128 528 581 HOH HOH . D 4 HOH A 129 529 562 HOH HOH . D 4 HOH A 130 530 574 HOH HOH . D 4 HOH A 131 531 568 HOH HOH . D 4 HOH A 132 532 575 HOH HOH . D 4 HOH A 133 533 555 HOH HOH . D 4 HOH A 134 534 536 HOH HOH . D 4 HOH A 135 535 611 HOH HOH . D 4 HOH A 136 536 559 HOH HOH . D 4 HOH A 137 537 578 HOH HOH . D 4 HOH A 138 538 561 HOH HOH . D 4 HOH A 139 539 582 HOH HOH . D 4 HOH A 140 540 511 HOH HOH . D 4 HOH A 141 541 527 HOH HOH . D 4 HOH A 142 542 590 HOH HOH . D 4 HOH A 143 543 593 HOH HOH . D 4 HOH A 144 544 600 HOH HOH . D 4 HOH A 145 545 605 HOH HOH . D 4 HOH A 146 546 602 HOH HOH . D 4 HOH A 147 547 589 HOH HOH . D 4 HOH A 148 548 599 HOH HOH . D 4 HOH A 149 549 583 HOH HOH . D 4 HOH A 150 550 585 HOH HOH . D 4 HOH A 151 551 607 HOH HOH . D 4 HOH A 152 552 596 HOH HOH . D 4 HOH A 153 553 595 HOH HOH . D 4 HOH A 154 554 606 HOH HOH . D 4 HOH A 155 555 598 HOH HOH . D 4 HOH A 156 556 609 HOH HOH . D 4 HOH A 157 557 620 HOH HOH . D 4 HOH A 158 558 603 HOH HOH . D 4 HOH A 159 559 664 HOH HOH . D 4 HOH A 160 560 594 HOH HOH . D 4 HOH A 161 561 592 HOH HOH . D 4 HOH A 162 562 614 HOH HOH . D 4 HOH A 163 563 625 HOH HOH . D 4 HOH A 164 564 613 HOH HOH . D 4 HOH A 165 565 651 HOH HOH . D 4 HOH A 166 566 618 HOH HOH . D 4 HOH A 167 567 601 HOH HOH . D 4 HOH A 168 568 615 HOH HOH . D 4 HOH A 169 569 617 HOH HOH . D 4 HOH A 170 570 635 HOH HOH . D 4 HOH A 171 571 616 HOH HOH . D 4 HOH A 172 572 630 HOH HOH . D 4 HOH A 173 573 619 HOH HOH . D 4 HOH A 174 574 621 HOH HOH . D 4 HOH A 175 575 638 HOH HOH . D 4 HOH A 176 576 521 HOH HOH . D 4 HOH A 177 577 622 HOH HOH . D 4 HOH A 178 578 629 HOH HOH . D 4 HOH A 179 579 624 HOH HOH . D 4 HOH A 180 580 654 HOH HOH . D 4 HOH A 181 581 587 HOH HOH . D 4 HOH A 182 582 642 HOH HOH . D 4 HOH A 183 583 637 HOH HOH . D 4 HOH A 184 584 636 HOH HOH . D 4 HOH A 185 585 631 HOH HOH . D 4 HOH A 186 586 653 HOH HOH . D 4 HOH A 187 587 641 HOH HOH . D 4 HOH A 188 588 1 HOH HOH . D 4 HOH A 189 589 639 HOH HOH . D 4 HOH A 190 590 644 HOH HOH . D 4 HOH A 191 591 640 HOH HOH . D 4 HOH A 192 592 632 HOH HOH . D 4 HOH A 193 593 669 HOH HOH . D 4 HOH A 194 594 655 HOH HOH . D 4 HOH A 195 595 645 HOH HOH . D 4 HOH A 196 596 533 HOH HOH . D 4 HOH A 197 597 658 HOH HOH . D 4 HOH A 198 598 634 HOH HOH . D 4 HOH A 199 599 646 HOH HOH . D 4 HOH A 200 600 557 HOH HOH . D 4 HOH A 201 601 662 HOH HOH . D 4 HOH A 202 602 680 HOH HOH . D 4 HOH A 203 603 676 HOH HOH . D 4 HOH A 204 604 673 HOH HOH . D 4 HOH A 205 605 659 HOH HOH . D 4 HOH A 206 606 647 HOH HOH . D 4 HOH A 207 607 663 HOH HOH . D 4 HOH A 208 608 652 HOH HOH . D 4 HOH A 209 609 649 HOH HOH . D 4 HOH A 210 610 675 HOH HOH . D 4 HOH A 211 611 668 HOH HOH . D 4 HOH A 212 612 674 HOH HOH . D 4 HOH A 213 613 665 HOH HOH . D 4 HOH A 214 614 685 HOH HOH . D 4 HOH A 215 615 678 HOH HOH . D 4 HOH A 216 616 677 HOH HOH . D 4 HOH A 217 617 684 HOH HOH . D 4 HOH A 218 618 679 HOH HOH . D 4 HOH A 219 619 688 HOH HOH . D 4 HOH A 220 620 682 HOH HOH . D 4 HOH A 221 621 683 HOH HOH . D 4 HOH A 222 622 699 HOH HOH . D 4 HOH A 223 623 694 HOH HOH . D 4 HOH A 224 624 701 HOH HOH . D 4 HOH A 225 625 698 HOH HOH . D 4 HOH A 226 626 692 HOH HOH . D 4 HOH A 227 627 697 HOH HOH . D 4 HOH A 228 628 720 HOH HOH . D 4 HOH A 229 629 703 HOH HOH . D 4 HOH A 230 630 670 HOH HOH . D 4 HOH A 231 631 712 HOH HOH . D 4 HOH A 232 632 710 HOH HOH . D 4 HOH A 233 633 704 HOH HOH . D 4 HOH A 234 634 732 HOH HOH . D 4 HOH A 235 635 714 HOH HOH . D 4 HOH A 236 636 718 HOH HOH . D 4 HOH A 237 637 719 HOH HOH . D 4 HOH A 238 638 713 HOH HOH . D 4 HOH A 239 639 721 HOH HOH . D 4 HOH A 240 640 726 HOH HOH . D 4 HOH A 241 641 734 HOH HOH . D 4 HOH A 242 642 741 HOH HOH . D 4 HOH A 243 643 733 HOH HOH . D 4 HOH A 244 644 735 HOH HOH . D 4 HOH A 245 645 724 HOH HOH . D 4 HOH A 246 646 730 HOH HOH . D 4 HOH A 247 647 746 HOH HOH . D 4 HOH A 248 648 738 HOH HOH . D 4 HOH A 249 649 749 HOH HOH . D 4 HOH A 250 650 747 HOH HOH . D 4 HOH A 251 651 758 HOH HOH . D 4 HOH A 252 652 756 HOH HOH . D 4 HOH A 253 653 762 HOH HOH . D 4 HOH A 254 654 765 HOH HOH . D 4 HOH A 255 655 768 HOH HOH . D 4 HOH A 256 656 757 HOH HOH . D 4 HOH A 257 657 771 HOH HOH . D 4 HOH A 258 658 777 HOH HOH . D 4 HOH A 259 659 774 HOH HOH . D 4 HOH A 260 660 778 HOH HOH . D 4 HOH A 261 661 781 HOH HOH . D 4 HOH A 262 662 780 HOH HOH . D 4 HOH A 263 663 785 HOH HOH . D 4 HOH A 264 664 786 HOH HOH . D 4 HOH A 265 665 784 HOH HOH . D 4 HOH A 266 666 788 HOH HOH . D 4 HOH A 267 667 787 HOH HOH . D 4 HOH A 268 668 791 HOH HOH . D 4 HOH A 269 669 792 HOH HOH . D 4 HOH A 270 670 794 HOH HOH . D 4 HOH A 271 671 793 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . C 3 23.593 -8.997 15.324 1 27.95 ? C1 GOL 302 A 1 HETATM 2 O O1 GOL . . . C 3 22.968 -9.194 16.621 1 25.99 ? O1 GOL 302 A 1 HETATM 3 C C2 GOL . . . C 3 23.048 -10.02 14.45 1 27.17 ? C2 GOL 302 A 1 HETATM 4 O O2 GOL . . . C 3 23.57 -9.765 13.062 1 21.52 ? O2 GOL 302 A 1 HETATM 5 C C3 GOL . . . C 3 23.572 -11.41 14.939 1 33.96 ? C3 GOL 302 A 1 HETATM 6 O O3 GOL . . . C 3 22.931 -12.549 14.262 1 46.96 ? O3 GOL 302 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 227 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 6 #