data_5YVA # _model_server_result.job_id B64bJsKBLeKHYcUpFd1m6Q _model_server_result.datetime_utc '2024-12-01 07:41:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5yva # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 5YVA # _exptl.entry_id 5YVA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 312.303 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3-(1H-tetrazol-5-yl)-10lambda~6~-thioxanthene-9,10,10-trione _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5YVA _cell.length_a 67.091 _cell.length_b 77.117 _cell.length_c 84.423 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5YVA _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C MET 246 A MET 396 1_555 A N CAS 247 A CAS 397 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale2 A C CAS 247 A CAS 397 1_555 A N LEU 248 A LEU 398 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? # _chem_comp.formula 'C14 H8 N4 O3 S' _chem_comp.formula_weight 312.303 _chem_comp.id 91X _chem_comp.mon_nstd_flag . _chem_comp.name 3-(1H-tetrazol-5-yl)-10lambda~6~-thioxanthene-9,10,10-trione _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O18 S16 91X doub 1 n n C21 C20 91X sing 2 n y C21 C22 91X doub 3 n y C20 C19 91X doub 4 n y C22 C01 91X sing 5 n y C19 S16 91X sing 6 n n C19 C02 91X sing 7 n y S16 C15 91X sing 8 n n S16 O17 91X doub 9 n n C01 C02 91X doub 10 n y C02 C03 91X sing 11 n n C15 C14 91X sing 12 n y C15 C05 91X doub 13 n y C14 C08 91X doub 14 n y C03 C05 91X sing 15 n n C03 O04 91X doub 16 n n C05 C06 91X sing 17 n y N10 N11 91X sing 18 n y N10 C09 91X sing 19 n y N11 N12 91X doub 20 n y C08 C09 91X sing 21 n n C08 C07 91X sing 22 n y C09 N13 91X doub 23 n y N12 N13 91X sing 24 n y C06 C07 91X doub 25 n y C21 H1 91X sing 26 n n C22 H2 91X sing 27 n n C01 H3 91X sing 28 n n C06 H4 91X sing 29 n n C07 H5 91X sing 30 n n C14 H6 91X sing 31 n n C20 H7 91X sing 32 n n N10 H8 91X sing 33 n n # _atom_sites.entry_id 5YVA _atom_sites.fract_transf_matrix[1][1] 0.014905 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012967 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011845 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 91X A 1 501 501 91X C10 . C 3 GOL A 1 502 601 GOL GOL . D 3 GOL A 1 503 602 GOL GOL . E 3 GOL A 1 504 603 GOL GOL . F 4 CL A 1 505 701 CL CL . G 5 HOH A 1 601 24 HOH HOH . G 5 HOH A 2 602 7 HOH HOH . G 5 HOH A 3 603 21 HOH HOH . G 5 HOH A 4 604 27 HOH HOH . G 5 HOH A 5 605 15 HOH HOH . G 5 HOH A 6 606 1 HOH HOH . G 5 HOH A 7 607 3 HOH HOH . G 5 HOH A 8 608 2 HOH HOH . G 5 HOH A 9 609 14 HOH HOH . G 5 HOH A 10 610 22 HOH HOH . G 5 HOH A 11 611 17 HOH HOH . G 5 HOH A 12 612 8 HOH HOH . G 5 HOH A 13 613 29 HOH HOH . G 5 HOH A 14 614 28 HOH HOH . G 5 HOH A 15 615 9 HOH HOH . G 5 HOH A 16 616 10 HOH HOH . G 5 HOH A 17 617 26 HOH HOH . G 5 HOH A 18 618 35 HOH HOH . G 5 HOH A 19 619 18 HOH HOH . G 5 HOH A 20 620 36 HOH HOH . G 5 HOH A 21 621 19 HOH HOH . G 5 HOH A 22 622 33 HOH HOH . G 5 HOH A 23 623 6 HOH HOH . G 5 HOH A 24 624 32 HOH HOH . G 5 HOH A 25 625 16 HOH HOH . G 5 HOH A 26 626 13 HOH HOH . G 5 HOH A 27 627 37 HOH HOH . G 5 HOH A 28 628 25 HOH HOH . G 5 HOH A 29 629 41 HOH HOH . G 5 HOH A 30 630 42 HOH HOH . G 5 HOH A 31 631 11 HOH HOH . G 5 HOH A 32 632 40 HOH HOH . G 5 HOH A 33 633 30 HOH HOH . G 5 HOH A 34 634 4 HOH HOH . G 5 HOH A 35 635 31 HOH HOH . G 5 HOH A 36 636 20 HOH HOH . G 5 HOH A 37 637 12 HOH HOH . G 5 HOH A 38 638 39 HOH HOH . G 5 HOH A 39 639 5 HOH HOH . G 5 HOH A 40 640 38 HOH HOH . G 5 HOH A 41 641 23 HOH HOH . G 5 HOH A 42 642 34 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C15 91X . . . B 2 -1.533 -6.709 26.095 1 43.25 ? C15 91X 501 A 1 HETATM 2 O O17 91X . . . B 2 -3.731 -5.5 26.338 1 57.66 ? O17 91X 501 A 1 HETATM 3 C C19 91X . . . B 2 -1.988 -4.049 25.379 1 34.03 ? C19 91X 501 A 1 HETATM 4 C C21 91X . . . B 2 -2.199 -1.672 24.824 1 39.96 ? C21 91X 501 A 1 HETATM 5 C C22 91X . . . B 2 -0.947 -1.397 25.351 1 38.72 ? C22 91X 501 A 1 HETATM 6 C C01 91X . . . B 2 -0.204 -2.44 25.888 1 41.24 ? C01 91X 501 A 1 HETATM 7 C C02 91X . . . B 2 -0.729 -3.759 25.906 1 38.09 ? C02 91X 501 A 1 HETATM 8 C C03 91X . . . B 2 0.113 -4.836 26.517 1 42.01 ? C03 91X 501 A 1 HETATM 9 C C05 91X . . . B 2 -0.287 -6.261 26.598 1 37.96 ? C05 91X 501 A 1 HETATM 10 C C06 91X . . . B 2 0.631 -7.16 27.178 1 35.48 ? C06 91X 501 A 1 HETATM 11 C C07 91X . . . B 2 0.342 -8.514 27.297 1 41.03 ? C07 91X 501 A 1 HETATM 12 C C08 91X . . . B 2 -0.901 -8.99 26.836 1 44.99 ? C08 91X 501 A 1 HETATM 13 C C09 91X . . . B 2 -1.221 -10.419 26.914 1 59.1 ? C09 91X 501 A 1 HETATM 14 C C14 91X . . . B 2 -1.801 -8.076 26.246 1 33.57 ? C14 91X 501 A 1 HETATM 15 C C20 91X . . . B 2 -2.697 -2.967 24.848 1 36.98 ? C20 91X 501 A 1 HETATM 16 N N10 91X . . . B 2 -0.31 -11.416 26.709 1 59.86 ? N10 91X 501 A 1 HETATM 17 N N11 91X . . . B 2 -0.962 -12.584 26.812 1 63.73 ? N11 91X 501 A 1 HETATM 18 N N12 91X . . . B 2 -2.226 -12.429 27.047 1 64.73 ? N12 91X 501 A 1 HETATM 19 N N13 91X . . . B 2 -2.467 -11.077 27.107 1 62.56 ? N13 91X 501 A 1 HETATM 20 O O04 91X . . . B 2 1.212 -4.523 26.969 1 49.96 ? O04 91X 501 A 1 HETATM 21 O O18 91X . . . B 2 -3.082 -5.942 24.075 1 59.72 ? O18 91X 501 A 1 HETATM 22 S S16 91X . . . B 2 -2.696 -5.584 25.393 1 49.92 ? S16 91X 501 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 494 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 22 #