data_5YVN # _model_server_result.job_id JpLrG-VAnXo8U1BcNA2Yjg _model_server_result.datetime_utc '2024-11-25 06:54:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5yvn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":305}' # _entry.id 5YVN # _exptl.entry_id 5YVN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 59.044 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ACETATE ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5YVN _cell.length_a 57.226 _cell.length_b 57.226 _cell.length_c 140.051 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5YVN _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_555 -x,-x+y,-z+1/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 46.683667 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C2 H3 O2 -1' _chem_comp.formula_weight 59.044 _chem_comp.id ACT _chem_comp.mon_nstd_flag . _chem_comp.name 'ACETATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C O ACT doub 1 n n C OXT ACT sing 2 n n C CH3 ACT sing 3 n n CH3 H1 ACT sing 4 n n CH3 H2 ACT sing 5 n n CH3 H3 ACT sing 6 n n # _atom_sites.entry_id 5YVN _atom_sites.fract_transf_matrix[1][1] 0.017475 _atom_sites.fract_transf_matrix[1][2] 0.010089 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020178 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00714 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GSH A 1 301 300 GSH GSH . C 3 SO4 A 1 302 301 SO4 SO4 . D 3 SO4 A 1 303 302 SO4 SO4 . E 3 SO4 A 1 304 303 SO4 SO4 . F 4 ACT A 1 305 305 ACT ACT . G 5 HOH A 1 401 300 HOH HOH . G 5 HOH A 2 402 177 HOH HOH . G 5 HOH A 3 403 309 HOH HOH . G 5 HOH A 4 404 194 HOH HOH . G 5 HOH A 5 405 45 HOH HOH . G 5 HOH A 6 406 60 HOH HOH . G 5 HOH A 7 407 264 HOH HOH . G 5 HOH A 8 408 284 HOH HOH . G 5 HOH A 9 409 267 HOH HOH . G 5 HOH A 10 410 203 HOH HOH . G 5 HOH A 11 411 99 HOH HOH . G 5 HOH A 12 412 8 HOH HOH . G 5 HOH A 13 413 71 HOH HOH . G 5 HOH A 14 414 13 HOH HOH . G 5 HOH A 15 415 57 HOH HOH . G 5 HOH A 16 416 37 HOH HOH . G 5 HOH A 17 417 134 HOH HOH . G 5 HOH A 18 418 225 HOH HOH . G 5 HOH A 19 419 334 HOH HOH . G 5 HOH A 20 420 59 HOH HOH . G 5 HOH A 21 421 56 HOH HOH . G 5 HOH A 22 422 211 HOH HOH . G 5 HOH A 23 423 83 HOH HOH . G 5 HOH A 24 424 197 HOH HOH . G 5 HOH A 25 425 58 HOH HOH . G 5 HOH A 26 426 102 HOH HOH . G 5 HOH A 27 427 306 HOH HOH . G 5 HOH A 28 428 6 HOH HOH . G 5 HOH A 29 429 64 HOH HOH . G 5 HOH A 30 430 166 HOH HOH . G 5 HOH A 31 431 48 HOH HOH . G 5 HOH A 32 432 24 HOH HOH . G 5 HOH A 33 433 155 HOH HOH . G 5 HOH A 34 434 273 HOH HOH . G 5 HOH A 35 435 333 HOH HOH . G 5 HOH A 36 436 124 HOH HOH . G 5 HOH A 37 437 254 HOH HOH . G 5 HOH A 38 438 152 HOH HOH . G 5 HOH A 39 439 168 HOH HOH . G 5 HOH A 40 440 130 HOH HOH . G 5 HOH A 41 441 145 HOH HOH . G 5 HOH A 42 442 97 HOH HOH . G 5 HOH A 43 443 65 HOH HOH . G 5 HOH A 44 444 139 HOH HOH . G 5 HOH A 45 445 44 HOH HOH . G 5 HOH A 46 446 28 HOH HOH . G 5 HOH A 47 447 43 HOH HOH . G 5 HOH A 48 448 4 HOH HOH . G 5 HOH A 49 449 51 HOH HOH . G 5 HOH A 50 450 181 HOH HOH . G 5 HOH A 51 451 22 HOH HOH . G 5 HOH A 52 452 27 HOH HOH . G 5 HOH A 53 453 205 HOH HOH . G 5 HOH A 54 454 163 HOH HOH . G 5 HOH A 55 455 50 HOH HOH . G 5 HOH A 56 456 141 HOH HOH . G 5 HOH A 57 457 54 HOH HOH . G 5 HOH A 58 458 18 HOH HOH . G 5 HOH A 59 459 234 HOH HOH . G 5 HOH A 60 460 72 HOH HOH . G 5 HOH A 61 461 140 HOH HOH . G 5 HOH A 62 462 92 HOH HOH . G 5 HOH A 63 463 172 HOH HOH . G 5 HOH A 64 464 107 HOH HOH . G 5 HOH A 65 465 21 HOH HOH . G 5 HOH A 66 466 19 HOH HOH . G 5 HOH A 67 467 335 HOH HOH . G 5 HOH A 68 468 78 HOH HOH . G 5 HOH A 69 469 95 HOH HOH . G 5 HOH A 70 470 122 HOH HOH . G 5 HOH A 71 471 62 HOH HOH . G 5 HOH A 72 472 292 HOH HOH . G 5 HOH A 73 473 315 HOH HOH . G 5 HOH A 74 474 269 HOH HOH . G 5 HOH A 75 475 91 HOH HOH . G 5 HOH A 76 476 40 HOH HOH . G 5 HOH A 77 477 200 HOH HOH . G 5 HOH A 78 478 126 HOH HOH . G 5 HOH A 79 479 252 HOH HOH . G 5 HOH A 80 480 2 HOH HOH . G 5 HOH A 81 481 123 HOH HOH . G 5 HOH A 82 482 165 HOH HOH . G 5 HOH A 83 483 237 HOH HOH . G 5 HOH A 84 484 55 HOH HOH . G 5 HOH A 85 485 30 HOH HOH . G 5 HOH A 86 486 38 HOH HOH . G 5 HOH A 87 487 20 HOH HOH . G 5 HOH A 88 488 33 HOH HOH . G 5 HOH A 89 489 198 HOH HOH . G 5 HOH A 90 490 120 HOH HOH . G 5 HOH A 91 491 39 HOH HOH . G 5 HOH A 92 492 88 HOH HOH . G 5 HOH A 93 493 15 HOH HOH . G 5 HOH A 94 494 75 HOH HOH . G 5 HOH A 95 495 79 HOH HOH . G 5 HOH A 96 496 80 HOH HOH . G 5 HOH A 97 497 274 HOH HOH . G 5 HOH A 98 498 219 HOH HOH . G 5 HOH A 99 499 7 HOH HOH . G 5 HOH A 100 500 12 HOH HOH . G 5 HOH A 101 501 1 HOH HOH . G 5 HOH A 102 502 298 HOH HOH . G 5 HOH A 103 503 31 HOH HOH . G 5 HOH A 104 504 156 HOH HOH . G 5 HOH A 105 505 46 HOH HOH . G 5 HOH A 106 506 187 HOH HOH . G 5 HOH A 107 507 26 HOH HOH . G 5 HOH A 108 508 117 HOH HOH . G 5 HOH A 109 509 119 HOH HOH . G 5 HOH A 110 510 128 HOH HOH . G 5 HOH A 111 511 285 HOH HOH . G 5 HOH A 112 512 150 HOH HOH . G 5 HOH A 113 513 154 HOH HOH . G 5 HOH A 114 514 178 HOH HOH . G 5 HOH A 115 515 235 HOH HOH . G 5 HOH A 116 516 248 HOH HOH . G 5 HOH A 117 517 131 HOH HOH . G 5 HOH A 118 518 98 HOH HOH . G 5 HOH A 119 519 153 HOH HOH . G 5 HOH A 120 520 133 HOH HOH . G 5 HOH A 121 521 147 HOH HOH . G 5 HOH A 122 522 103 HOH HOH . G 5 HOH A 123 523 137 HOH HOH . G 5 HOH A 124 524 110 HOH HOH . G 5 HOH A 125 525 319 HOH HOH . G 5 HOH A 126 526 82 HOH HOH . G 5 HOH A 127 527 146 HOH HOH . G 5 HOH A 128 528 106 HOH HOH . G 5 HOH A 129 529 25 HOH HOH . G 5 HOH A 130 530 118 HOH HOH . G 5 HOH A 131 531 81 HOH HOH . G 5 HOH A 132 532 136 HOH HOH . G 5 HOH A 133 533 112 HOH HOH . G 5 HOH A 134 534 52 HOH HOH . G 5 HOH A 135 535 34 HOH HOH . G 5 HOH A 136 536 10 HOH HOH . G 5 HOH A 137 537 115 HOH HOH . G 5 HOH A 138 538 246 HOH HOH . G 5 HOH A 139 539 36 HOH HOH . G 5 HOH A 140 540 127 HOH HOH . G 5 HOH A 141 541 226 HOH HOH . G 5 HOH A 142 542 293 HOH HOH . G 5 HOH A 143 543 53 HOH HOH . G 5 HOH A 144 544 121 HOH HOH . G 5 HOH A 145 545 192 HOH HOH . G 5 HOH A 146 546 227 HOH HOH . G 5 HOH A 147 547 286 HOH HOH . G 5 HOH A 148 548 3 HOH HOH . G 5 HOH A 149 549 101 HOH HOH . G 5 HOH A 150 550 16 HOH HOH . G 5 HOH A 151 551 47 HOH HOH . G 5 HOH A 152 552 90 HOH HOH . G 5 HOH A 153 553 17 HOH HOH . G 5 HOH A 154 554 76 HOH HOH . G 5 HOH A 155 555 68 HOH HOH . G 5 HOH A 156 556 108 HOH HOH . G 5 HOH A 157 557 70 HOH HOH . G 5 HOH A 158 558 170 HOH HOH . G 5 HOH A 159 559 66 HOH HOH . G 5 HOH A 160 560 14 HOH HOH . G 5 HOH A 161 561 210 HOH HOH . G 5 HOH A 162 562 67 HOH HOH . G 5 HOH A 163 563 257 HOH HOH . G 5 HOH A 164 564 125 HOH HOH . G 5 HOH A 165 565 116 HOH HOH . G 5 HOH A 166 566 84 HOH HOH . G 5 HOH A 167 567 11 HOH HOH . G 5 HOH A 168 568 175 HOH HOH . G 5 HOH A 169 569 317 HOH HOH . G 5 HOH A 170 570 105 HOH HOH . G 5 HOH A 171 571 171 HOH HOH . G 5 HOH A 172 572 148 HOH HOH . G 5 HOH A 173 573 5 HOH HOH . G 5 HOH A 174 574 238 HOH HOH . G 5 HOH A 175 575 77 HOH HOH . G 5 HOH A 176 576 311 HOH HOH . G 5 HOH A 177 577 89 HOH HOH . G 5 HOH A 178 578 49 HOH HOH . G 5 HOH A 179 579 261 HOH HOH . G 5 HOH A 180 580 9 HOH HOH . G 5 HOH A 181 581 260 HOH HOH . G 5 HOH A 182 582 255 HOH HOH . G 5 HOH A 183 583 193 HOH HOH . G 5 HOH A 184 584 270 HOH HOH . G 5 HOH A 185 585 35 HOH HOH . G 5 HOH A 186 586 239 HOH HOH . G 5 HOH A 187 587 94 HOH HOH . G 5 HOH A 188 588 74 HOH HOH . G 5 HOH A 189 589 114 HOH HOH . G 5 HOH A 190 590 32 HOH HOH . G 5 HOH A 191 591 158 HOH HOH . G 5 HOH A 192 592 85 HOH HOH . G 5 HOH A 193 593 96 HOH HOH . G 5 HOH A 194 594 142 HOH HOH . G 5 HOH A 195 595 157 HOH HOH . G 5 HOH A 196 596 87 HOH HOH . G 5 HOH A 197 597 244 HOH HOH . G 5 HOH A 198 598 330 HOH HOH . G 5 HOH A 199 599 29 HOH HOH . G 5 HOH A 200 600 314 HOH HOH . G 5 HOH A 201 601 313 HOH HOH . G 5 HOH A 202 602 220 HOH HOH . G 5 HOH A 203 603 61 HOH HOH . G 5 HOH A 204 604 144 HOH HOH . G 5 HOH A 205 605 332 HOH HOH . G 5 HOH A 206 606 266 HOH HOH . G 5 HOH A 207 607 143 HOH HOH . G 5 HOH A 208 608 310 HOH HOH . G 5 HOH A 209 609 282 HOH HOH . G 5 HOH A 210 610 233 HOH HOH . G 5 HOH A 211 611 204 HOH HOH . G 5 HOH A 212 612 324 HOH HOH . G 5 HOH A 213 613 213 HOH HOH . G 5 HOH A 214 614 167 HOH HOH . G 5 HOH A 215 615 331 HOH HOH . G 5 HOH A 216 616 281 HOH HOH . G 5 HOH A 217 617 327 HOH HOH . G 5 HOH A 218 618 289 HOH HOH . G 5 HOH A 219 619 265 HOH HOH . G 5 HOH A 220 620 250 HOH HOH . G 5 HOH A 221 621 222 HOH HOH . G 5 HOH A 222 622 305 HOH HOH . G 5 HOH A 223 623 316 HOH HOH . G 5 HOH A 224 624 323 HOH HOH . G 5 HOH A 225 625 326 HOH HOH . G 5 HOH A 226 626 259 HOH HOH . G 5 HOH A 227 627 287 HOH HOH . G 5 HOH A 228 628 162 HOH HOH . G 5 HOH A 229 629 325 HOH HOH . G 5 HOH A 230 630 132 HOH HOH . G 5 HOH A 231 631 223 HOH HOH . G 5 HOH A 232 632 184 HOH HOH . G 5 HOH A 233 633 291 HOH HOH . G 5 HOH A 234 634 111 HOH HOH . G 5 HOH A 235 635 228 HOH HOH . G 5 HOH A 236 636 301 HOH HOH . G 5 HOH A 237 637 180 HOH HOH . G 5 HOH A 238 638 276 HOH HOH . G 5 HOH A 239 639 320 HOH HOH . G 5 HOH A 240 640 160 HOH HOH . G 5 HOH A 241 641 199 HOH HOH . G 5 HOH A 242 642 202 HOH HOH . G 5 HOH A 243 643 258 HOH HOH . G 5 HOH A 244 644 294 HOH HOH . G 5 HOH A 245 645 182 HOH HOH . G 5 HOH A 246 646 328 HOH HOH . G 5 HOH A 247 647 277 HOH HOH . G 5 HOH A 248 648 208 HOH HOH . G 5 HOH A 249 649 251 HOH HOH . G 5 HOH A 250 650 229 HOH HOH . G 5 HOH A 251 651 217 HOH HOH . G 5 HOH A 252 652 278 HOH HOH . G 5 HOH A 253 653 275 HOH HOH . G 5 HOH A 254 654 93 HOH HOH . G 5 HOH A 255 655 318 HOH HOH . G 5 HOH A 256 656 86 HOH HOH . G 5 HOH A 257 657 149 HOH HOH . G 5 HOH A 258 658 312 HOH HOH . G 5 HOH A 259 659 247 HOH HOH . G 5 HOH A 260 660 308 HOH HOH . G 5 HOH A 261 661 242 HOH HOH . G 5 HOH A 262 662 302 HOH HOH . G 5 HOH A 263 663 41 HOH HOH . G 5 HOH A 264 664 256 HOH HOH . G 5 HOH A 265 665 295 HOH HOH . G 5 HOH A 266 666 290 HOH HOH . G 5 HOH A 267 667 209 HOH HOH . G 5 HOH A 268 668 176 HOH HOH . G 5 HOH A 269 669 179 HOH HOH . G 5 HOH A 270 670 307 HOH HOH . G 5 HOH A 271 671 206 HOH HOH . G 5 HOH A 272 672 272 HOH HOH . G 5 HOH A 273 673 190 HOH HOH . G 5 HOH A 274 674 73 HOH HOH . G 5 HOH A 275 675 161 HOH HOH . G 5 HOH A 276 676 322 HOH HOH . G 5 HOH A 277 677 288 HOH HOH . G 5 HOH A 278 678 138 HOH HOH . G 5 HOH A 279 679 271 HOH HOH . G 5 HOH A 280 680 185 HOH HOH . G 5 HOH A 281 681 100 HOH HOH . G 5 HOH A 282 682 189 HOH HOH . G 5 HOH A 283 683 169 HOH HOH . G 5 HOH A 284 684 221 HOH HOH . G 5 HOH A 285 685 173 HOH HOH . G 5 HOH A 286 686 297 HOH HOH . G 5 HOH A 287 687 280 HOH HOH . G 5 HOH A 288 688 283 HOH HOH . G 5 HOH A 289 689 304 HOH HOH . G 5 HOH A 290 690 231 HOH HOH . G 5 HOH A 291 691 303 HOH HOH . G 5 HOH A 292 692 151 HOH HOH . G 5 HOH A 293 693 240 HOH HOH . G 5 HOH A 294 694 207 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C ACT . . . F 4 18.578 -21.172 25.694 1 22.77 ? C ACT 305 A 1 HETATM 2 O O ACT . . . F 4 18.95 -21.96 24.796 1 22.64 ? O ACT 305 A 1 HETATM 3 O OXT ACT . . . F 4 17.491 -20.581 25.495 1 22.62 ? OXT ACT 305 A 1 HETATM 4 C CH3 ACT . . . F 4 19.403 -20.948 26.927 1 25.78 ? CH3 ACT 305 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 303 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 4 #