data_5YVO # _model_server_result.job_id F2Ztqt1kWisG0DheAcoEzQ _model_server_result.datetime_utc '2024-11-25 09:46:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5yvo # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":304}' # _entry.id 5YVO # _exptl.entry_id 5YVO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 59.044 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ACETATE ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5YVO _cell.length_a 56.744 _cell.length_b 56.744 _cell.length_c 139.356 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5YVO _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_555 -x,-x+y,-z+1/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 46.452 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 32 A CYS 32 1_555 F C03 MLX . A MLX 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.637 ? covale ? covale2 A SG CYS 112 A CYS 112 1_555 G C03 MLX . A MLX 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.645 ? # _chem_comp.formula 'C2 H3 O2 -1' _chem_comp.formula_weight 59.044 _chem_comp.id ACT _chem_comp.mon_nstd_flag . _chem_comp.name 'ACETATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C O ACT doub 1 n n C OXT ACT sing 2 n n C CH3 ACT sing 3 n n CH3 H1 ACT sing 4 n n CH3 H2 ACT sing 5 n n CH3 H3 ACT sing 6 n n # _atom_sites.entry_id 5YVO _atom_sites.fract_transf_matrix[1][1] 0.017623 _atom_sites.fract_transf_matrix[1][2] 0.010175 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020349 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007176 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 301 301 SO4 SO4 . C 2 SO4 A 1 302 302 SO4 SO4 . D 2 SO4 A 1 303 303 SO4 SO4 . E 3 ACT A 1 304 401 ACT ACT . F 4 MLX A 1 305 501 MLX ML1 . G 4 MLX A 1 306 502 MLX ML1 . H 5 HOH A 1 401 248 HOH HOH . H 5 HOH A 2 402 245 HOH HOH . H 5 HOH A 3 403 125 HOH HOH . H 5 HOH A 4 404 22 HOH HOH . H 5 HOH A 5 405 107 HOH HOH . H 5 HOH A 6 406 194 HOH HOH . H 5 HOH A 7 407 191 HOH HOH . H 5 HOH A 8 408 257 HOH HOH . H 5 HOH A 9 409 197 HOH HOH . H 5 HOH A 10 410 81 HOH HOH . H 5 HOH A 11 411 30 HOH HOH . H 5 HOH A 12 412 190 HOH HOH . H 5 HOH A 13 413 32 HOH HOH . H 5 HOH A 14 414 102 HOH HOH . H 5 HOH A 15 415 69 HOH HOH . H 5 HOH A 16 416 178 HOH HOH . H 5 HOH A 17 417 201 HOH HOH . H 5 HOH A 18 418 85 HOH HOH . H 5 HOH A 19 419 62 HOH HOH . H 5 HOH A 20 420 109 HOH HOH . H 5 HOH A 21 421 111 HOH HOH . H 5 HOH A 22 422 79 HOH HOH . H 5 HOH A 23 423 174 HOH HOH . H 5 HOH A 24 424 144 HOH HOH . H 5 HOH A 25 425 202 HOH HOH . H 5 HOH A 26 426 108 HOH HOH . H 5 HOH A 27 427 91 HOH HOH . H 5 HOH A 28 428 170 HOH HOH . H 5 HOH A 29 429 5 HOH HOH . H 5 HOH A 30 430 17 HOH HOH . H 5 HOH A 31 431 11 HOH HOH . H 5 HOH A 32 432 195 HOH HOH . H 5 HOH A 33 433 45 HOH HOH . H 5 HOH A 34 434 110 HOH HOH . H 5 HOH A 35 435 60 HOH HOH . H 5 HOH A 36 436 96 HOH HOH . H 5 HOH A 37 437 209 HOH HOH . H 5 HOH A 38 438 29 HOH HOH . H 5 HOH A 39 439 74 HOH HOH . H 5 HOH A 40 440 134 HOH HOH . H 5 HOH A 41 441 37 HOH HOH . H 5 HOH A 42 442 52 HOH HOH . H 5 HOH A 43 443 203 HOH HOH . H 5 HOH A 44 444 57 HOH HOH . H 5 HOH A 45 445 7 HOH HOH . H 5 HOH A 46 446 53 HOH HOH . H 5 HOH A 47 447 70 HOH HOH . H 5 HOH A 48 448 179 HOH HOH . H 5 HOH A 49 449 192 HOH HOH . H 5 HOH A 50 450 34 HOH HOH . H 5 HOH A 51 451 12 HOH HOH . H 5 HOH A 52 452 41 HOH HOH . H 5 HOH A 53 453 132 HOH HOH . H 5 HOH A 54 454 55 HOH HOH . H 5 HOH A 55 455 100 HOH HOH . H 5 HOH A 56 456 135 HOH HOH . H 5 HOH A 57 457 189 HOH HOH . H 5 HOH A 58 458 3 HOH HOH . H 5 HOH A 59 459 242 HOH HOH . H 5 HOH A 60 460 136 HOH HOH . H 5 HOH A 61 461 25 HOH HOH . H 5 HOH A 62 462 226 HOH HOH . H 5 HOH A 63 463 140 HOH HOH . H 5 HOH A 64 464 86 HOH HOH . H 5 HOH A 65 465 210 HOH HOH . H 5 HOH A 66 466 264 HOH HOH . H 5 HOH A 67 467 221 HOH HOH . H 5 HOH A 68 468 115 HOH HOH . H 5 HOH A 69 469 47 HOH HOH . H 5 HOH A 70 470 198 HOH HOH . H 5 HOH A 71 471 121 HOH HOH . H 5 HOH A 72 472 65 HOH HOH . H 5 HOH A 73 473 2 HOH HOH . H 5 HOH A 74 474 150 HOH HOH . H 5 HOH A 75 475 139 HOH HOH . H 5 HOH A 76 476 72 HOH HOH . H 5 HOH A 77 477 18 HOH HOH . H 5 HOH A 78 478 23 HOH HOH . H 5 HOH A 79 479 232 HOH HOH . H 5 HOH A 80 480 90 HOH HOH . H 5 HOH A 81 481 19 HOH HOH . H 5 HOH A 82 482 63 HOH HOH . H 5 HOH A 83 483 14 HOH HOH . H 5 HOH A 84 484 254 HOH HOH . H 5 HOH A 85 485 163 HOH HOH . H 5 HOH A 86 486 103 HOH HOH . H 5 HOH A 87 487 36 HOH HOH . H 5 HOH A 88 488 80 HOH HOH . H 5 HOH A 89 489 243 HOH HOH . H 5 HOH A 90 490 229 HOH HOH . H 5 HOH A 91 491 40 HOH HOH . H 5 HOH A 92 492 68 HOH HOH . H 5 HOH A 93 493 21 HOH HOH . H 5 HOH A 94 494 123 HOH HOH . H 5 HOH A 95 495 73 HOH HOH . H 5 HOH A 96 496 50 HOH HOH . H 5 HOH A 97 497 138 HOH HOH . H 5 HOH A 98 498 39 HOH HOH . H 5 HOH A 99 499 33 HOH HOH . H 5 HOH A 100 500 49 HOH HOH . H 5 HOH A 101 501 204 HOH HOH . H 5 HOH A 102 502 42 HOH HOH . H 5 HOH A 103 503 87 HOH HOH . H 5 HOH A 104 504 258 HOH HOH . H 5 HOH A 105 505 43 HOH HOH . H 5 HOH A 106 506 97 HOH HOH . H 5 HOH A 107 507 169 HOH HOH . H 5 HOH A 108 508 59 HOH HOH . H 5 HOH A 109 509 51 HOH HOH . H 5 HOH A 110 510 168 HOH HOH . H 5 HOH A 111 511 166 HOH HOH . H 5 HOH A 112 512 54 HOH HOH . H 5 HOH A 113 513 31 HOH HOH . H 5 HOH A 114 514 120 HOH HOH . H 5 HOH A 115 515 176 HOH HOH . H 5 HOH A 116 516 147 HOH HOH . H 5 HOH A 117 517 13 HOH HOH . H 5 HOH A 118 518 157 HOH HOH . H 5 HOH A 119 519 48 HOH HOH . H 5 HOH A 120 520 142 HOH HOH . H 5 HOH A 121 521 180 HOH HOH . H 5 HOH A 122 522 223 HOH HOH . H 5 HOH A 123 523 16 HOH HOH . H 5 HOH A 124 524 152 HOH HOH . H 5 HOH A 125 525 119 HOH HOH . H 5 HOH A 126 526 171 HOH HOH . H 5 HOH A 127 527 76 HOH HOH . H 5 HOH A 128 528 261 HOH HOH . H 5 HOH A 129 529 1 HOH HOH . H 5 HOH A 130 530 217 HOH HOH . H 5 HOH A 131 531 219 HOH HOH . H 5 HOH A 132 532 105 HOH HOH . H 5 HOH A 133 533 263 HOH HOH . H 5 HOH A 134 534 9 HOH HOH . H 5 HOH A 135 535 82 HOH HOH . H 5 HOH A 136 536 27 HOH HOH . H 5 HOH A 137 537 161 HOH HOH . H 5 HOH A 138 538 146 HOH HOH . H 5 HOH A 139 539 235 HOH HOH . H 5 HOH A 140 540 220 HOH HOH . H 5 HOH A 141 541 154 HOH HOH . H 5 HOH A 142 542 64 HOH HOH . H 5 HOH A 143 543 77 HOH HOH . H 5 HOH A 144 544 128 HOH HOH . H 5 HOH A 145 545 6 HOH HOH . H 5 HOH A 146 546 164 HOH HOH . H 5 HOH A 147 547 158 HOH HOH . H 5 HOH A 148 548 145 HOH HOH . H 5 HOH A 149 549 205 HOH HOH . H 5 HOH A 150 550 4 HOH HOH . H 5 HOH A 151 551 83 HOH HOH . H 5 HOH A 152 552 35 HOH HOH . H 5 HOH A 153 553 141 HOH HOH . H 5 HOH A 154 554 133 HOH HOH . H 5 HOH A 155 555 260 HOH HOH . H 5 HOH A 156 556 92 HOH HOH . H 5 HOH A 157 557 114 HOH HOH . H 5 HOH A 158 558 61 HOH HOH . H 5 HOH A 159 559 167 HOH HOH . H 5 HOH A 160 560 8 HOH HOH . H 5 HOH A 161 561 98 HOH HOH . H 5 HOH A 162 562 99 HOH HOH . H 5 HOH A 163 563 228 HOH HOH . H 5 HOH A 164 564 26 HOH HOH . H 5 HOH A 165 565 218 HOH HOH . H 5 HOH A 166 566 101 HOH HOH . H 5 HOH A 167 567 78 HOH HOH . H 5 HOH A 168 568 175 HOH HOH . H 5 HOH A 169 569 155 HOH HOH . H 5 HOH A 170 570 130 HOH HOH . H 5 HOH A 171 571 240 HOH HOH . H 5 HOH A 172 572 122 HOH HOH . H 5 HOH A 173 573 104 HOH HOH . H 5 HOH A 174 574 28 HOH HOH . H 5 HOH A 175 575 88 HOH HOH . H 5 HOH A 176 576 224 HOH HOH . H 5 HOH A 177 577 46 HOH HOH . H 5 HOH A 178 578 94 HOH HOH . H 5 HOH A 179 579 255 HOH HOH . H 5 HOH A 180 580 10 HOH HOH . H 5 HOH A 181 581 24 HOH HOH . H 5 HOH A 182 582 56 HOH HOH . H 5 HOH A 183 583 58 HOH HOH . H 5 HOH A 184 584 148 HOH HOH . H 5 HOH A 185 585 75 HOH HOH . H 5 HOH A 186 586 199 HOH HOH . H 5 HOH A 187 587 113 HOH HOH . H 5 HOH A 188 588 162 HOH HOH . H 5 HOH A 189 589 15 HOH HOH . H 5 HOH A 190 590 84 HOH HOH . H 5 HOH A 191 591 149 HOH HOH . H 5 HOH A 192 592 127 HOH HOH . H 5 HOH A 193 593 165 HOH HOH . H 5 HOH A 194 594 238 HOH HOH . H 5 HOH A 195 595 206 HOH HOH . H 5 HOH A 196 596 20 HOH HOH . H 5 HOH A 197 597 153 HOH HOH . H 5 HOH A 198 598 183 HOH HOH . H 5 HOH A 199 599 160 HOH HOH . H 5 HOH A 200 600 182 HOH HOH . H 5 HOH A 201 601 186 HOH HOH . H 5 HOH A 202 602 193 HOH HOH . H 5 HOH A 203 603 89 HOH HOH . H 5 HOH A 204 604 118 HOH HOH . H 5 HOH A 205 605 207 HOH HOH . H 5 HOH A 206 606 185 HOH HOH . H 5 HOH A 207 607 256 HOH HOH . H 5 HOH A 208 608 251 HOH HOH . H 5 HOH A 209 609 71 HOH HOH . H 5 HOH A 210 610 184 HOH HOH . H 5 HOH A 211 611 212 HOH HOH . H 5 HOH A 212 612 188 HOH HOH . H 5 HOH A 213 613 93 HOH HOH . H 5 HOH A 214 614 265 HOH HOH . H 5 HOH A 215 615 129 HOH HOH . H 5 HOH A 216 616 112 HOH HOH . H 5 HOH A 217 617 216 HOH HOH . H 5 HOH A 218 618 156 HOH HOH . H 5 HOH A 219 619 225 HOH HOH . H 5 HOH A 220 620 177 HOH HOH . H 5 HOH A 221 621 172 HOH HOH . H 5 HOH A 222 622 234 HOH HOH . H 5 HOH A 223 623 200 HOH HOH . H 5 HOH A 224 624 67 HOH HOH . H 5 HOH A 225 625 259 HOH HOH . H 5 HOH A 226 626 187 HOH HOH . H 5 HOH A 227 627 222 HOH HOH . H 5 HOH A 228 628 66 HOH HOH . H 5 HOH A 229 629 249 HOH HOH . H 5 HOH A 230 630 116 HOH HOH . H 5 HOH A 231 631 44 HOH HOH . H 5 HOH A 232 632 124 HOH HOH . H 5 HOH A 233 633 230 HOH HOH . H 5 HOH A 234 634 143 HOH HOH . H 5 HOH A 235 635 137 HOH HOH . H 5 HOH A 236 636 126 HOH HOH . H 5 HOH A 237 637 215 HOH HOH . H 5 HOH A 238 638 106 HOH HOH . H 5 HOH A 239 639 95 HOH HOH . H 5 HOH A 240 640 239 HOH HOH . H 5 HOH A 241 641 131 HOH HOH . H 5 HOH A 242 642 237 HOH HOH . H 5 HOH A 243 643 159 HOH HOH . H 5 HOH A 244 644 181 HOH HOH . H 5 HOH A 245 645 117 HOH HOH . H 5 HOH A 246 646 151 HOH HOH . H 5 HOH A 247 647 213 HOH HOH . H 5 HOH A 248 648 266 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C ACT . . . E 3 -18.432 21.135 25.546 1 23.29 ? C ACT 304 A 1 HETATM 2 O O ACT . . . E 3 -18.88 21.897 24.658 1 23.08 ? O ACT 304 A 1 HETATM 3 O OXT ACT . . . E 3 -17.327 20.564 25.401 1 23.25 ? OXT ACT 304 A 1 HETATM 4 C CH3 ACT . . . E 3 -19.344 20.756 26.675 1 20.76 ? CH3 ACT 304 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 304 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 4 #