data_5YVT
#
_model_server_result.job_id            5CG9pUO4zeTJf23IhnIzgA 
_model_server_result.datetime_utc      '2024-11-05 14:48:06' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5yvt 
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_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":401}' 
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_entry.id    5YVT 
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_exptl.entry_id    5YVT 
_exptl.method      'X-RAY DIFFRACTION' 
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_entity.details                     ? 
_entity.formula_weight              24.305 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'MAGNESIUM ION' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            5YVT 
_cell.length_a            118.027 
_cell.length_b            118.027 
_cell.length_c            142.109 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
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_symmetry.entry_id                 5YVT 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        152 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 31 2 1' 
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_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
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_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
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_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD1 ASP 230 A ASP 230 1_555 C MG MG . A MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.161 ? 
metalc ? metalc2 A OD2 ASP 234 A ASP 234 1_555 C MG MG . A MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.362 ? 
metalc ? metalc3 C MG MG . A MG 401 1_555 F O HOH . A HOH 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.221 ? 
metalc ? metalc4 C MG MG . A MG 401 1_555 F O HOH . A HOH 517 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.954 ? 
metalc ? metalc5 C MG MG . A MG 401 1_555 B OD2 ASP 215 B ASP 215 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.076 ? 
metalc ? metalc6 C MG MG . A MG 401 1_555 G O HOH . B HOH 569 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.124 ? 
#
_chem_comp.formula           'Mg 2' 
_chem_comp.formula_weight    24.305 
_chem_comp.id                MG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'MAGNESIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
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_atom_sites.entry_id                     5YVT 
_atom_sites.fract_transf_matrix[1][1]    0.008473 
_atom_sites.fract_transf_matrix[1][2]    0.004892 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009783 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007037 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 MG A 1 401 1 MG MG . 
D 4 NAI A 1 402 1 NAI NAI . 
E 4 NAI B 1 401 1 NAI NAI . 
F 5 HOH A 1 501 12 HOH HOH . 
F 5 HOH A 2 502 47 HOH HOH . 
F 5 HOH A 3 503 77 HOH HOH . 
F 5 HOH A 4 504 94 HOH HOH . 
F 5 HOH A 5 505 7 HOH HOH . 
F 5 HOH A 6 506 26 HOH HOH . 
F 5 HOH A 7 507 92 HOH HOH . 
F 5 HOH A 8 508 49 HOH HOH . 
F 5 HOH A 9 509 73 HOH HOH . 
F 5 HOH A 10 510 55 HOH HOH . 
F 5 HOH A 11 511 70 HOH HOH . 
F 5 HOH A 12 512 39 HOH HOH . 
F 5 HOH A 13 513 16 HOH HOH . 
F 5 HOH A 14 514 67 HOH HOH . 
F 5 HOH A 15 515 91 HOH HOH . 
F 5 HOH A 16 516 65 HOH HOH . 
F 5 HOH A 17 517 80 HOH HOH . 
G 5 HOH B 1 501 17 HOH HOH . 
G 5 HOH B 2 502 45 HOH HOH . 
G 5 HOH B 3 503 75 HOH HOH . 
G 5 HOH B 4 504 27 HOH HOH . 
G 5 HOH B 5 505 35 HOH HOH . 
G 5 HOH B 6 506 19 HOH HOH . 
G 5 HOH B 7 507 43 HOH HOH . 
G 5 HOH B 8 508 66 HOH HOH . 
G 5 HOH B 9 509 30 HOH HOH . 
G 5 HOH B 10 510 52 HOH HOH . 
G 5 HOH B 11 511 38 HOH HOH . 
G 5 HOH B 12 512 5 HOH HOH . 
G 5 HOH B 13 513 22 HOH HOH . 
G 5 HOH B 14 514 79 HOH HOH . 
G 5 HOH B 15 515 2 HOH HOH . 
G 5 HOH B 16 516 29 HOH HOH . 
G 5 HOH B 17 517 53 HOH HOH . 
G 5 HOH B 18 518 6 HOH HOH . 
G 5 HOH B 19 519 90 HOH HOH . 
G 5 HOH B 20 520 57 HOH HOH . 
G 5 HOH B 21 521 15 HOH HOH . 
G 5 HOH B 22 522 9 HOH HOH . 
G 5 HOH B 23 523 50 HOH HOH . 
G 5 HOH B 24 524 11 HOH HOH . 
G 5 HOH B 25 525 25 HOH HOH . 
G 5 HOH B 26 526 87 HOH HOH . 
G 5 HOH B 27 527 34 HOH HOH . 
G 5 HOH B 28 528 24 HOH HOH . 
G 5 HOH B 29 529 48 HOH HOH . 
G 5 HOH B 30 530 3 HOH HOH . 
G 5 HOH B 31 531 23 HOH HOH . 
G 5 HOH B 32 532 41 HOH HOH . 
G 5 HOH B 33 533 72 HOH HOH . 
G 5 HOH B 34 534 20 HOH HOH . 
G 5 HOH B 35 535 32 HOH HOH . 
G 5 HOH B 36 536 18 HOH HOH . 
G 5 HOH B 37 537 60 HOH HOH . 
G 5 HOH B 38 538 33 HOH HOH . 
G 5 HOH B 39 539 28 HOH HOH . 
G 5 HOH B 40 540 21 HOH HOH . 
G 5 HOH B 41 541 8 HOH HOH . 
G 5 HOH B 42 542 31 HOH HOH . 
G 5 HOH B 43 543 83 HOH HOH . 
G 5 HOH B 44 544 68 HOH HOH . 
G 5 HOH B 45 545 54 HOH HOH . 
G 5 HOH B 46 546 76 HOH HOH . 
G 5 HOH B 47 547 59 HOH HOH . 
G 5 HOH B 48 548 64 HOH HOH . 
G 5 HOH B 49 549 4 HOH HOH . 
G 5 HOH B 50 550 40 HOH HOH . 
G 5 HOH B 51 551 74 HOH HOH . 
G 5 HOH B 52 552 37 HOH HOH . 
G 5 HOH B 53 553 86 HOH HOH . 
G 5 HOH B 54 554 69 HOH HOH . 
G 5 HOH B 55 555 93 HOH HOH . 
G 5 HOH B 56 556 84 HOH HOH . 
G 5 HOH B 57 557 46 HOH HOH . 
G 5 HOH B 58 558 13 HOH HOH . 
G 5 HOH B 59 559 51 HOH HOH . 
G 5 HOH B 60 560 88 HOH HOH . 
G 5 HOH B 61 561 56 HOH HOH . 
G 5 HOH B 62 562 44 HOH HOH . 
G 5 HOH B 63 563 61 HOH HOH . 
G 5 HOH B 64 564 42 HOH HOH . 
G 5 HOH B 65 565 81 HOH HOH . 
G 5 HOH B 66 566 78 HOH HOH . 
G 5 HOH B 67 567 1 HOH HOH . 
G 5 HOH B 68 568 10 HOH HOH . 
G 5 HOH B 69 569 36 HOH HOH . 
G 5 HOH B 70 570 58 HOH HOH . 
G 5 HOH B 71 571 82 HOH HOH . 
G 5 HOH B 72 572 89 HOH HOH . 
G 5 HOH B 73 573 62 HOH HOH . 
G 5 HOH B 74 574 14 HOH HOH . 
G 5 HOH B 75 575 71 HOH HOH . 
G 5 HOH B 76 576 85 HOH HOH . 
G 5 HOH B 77 577 63 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           MG 
_atom_site.label_atom_id         MG 
_atom_site.label_comp_id         MG 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         C 
_atom_site.label_entity_id       3 
_atom_site.Cartn_x               41.893 
_atom_site.Cartn_y               -21.685 
_atom_site.Cartn_z               27.151 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        52.58 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          MG 
_atom_site.auth_comp_id          MG 
_atom_site.auth_seq_id           401 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
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_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           276 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           1 
#