data_5YVX
#
_model_server_result.job_id            1C3DV8hvUlP3eQI0XecxJg 
_model_server_result.datetime_utc      '2024-11-05 01:22:35' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5yvx 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":1001}' 
#
_entry.id    5YVX 
#
_exptl.entry_id    5YVX 
_exptl.method      'X-RAY DIFFRACTION' 
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_entity.details                     ? 
_entity.formula_weight              65.409 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'ZINC ION' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            5YVX 
_cell.length_a            66.421 
_cell.length_b            66.421 
_cell.length_c            29.241 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5YVX 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        173 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 63' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 7 A CYS 868 1_555 C ZN ZN . A ZN 1001 1_555 ? ? ? ? L ? ? ? ? ? ? ? 2.363 ? 
metalc ? metalc2 A SG CYS 10 A CYS 871 1_555 C ZN ZN . A ZN 1001 1_555 ? ? ? ? L ? ? ? ? ? ? ? 2.313 ? 
metalc ? metalc3 A SG CYS 32 A CYS 893 1_555 C ZN ZN . A ZN 1001 1_555 ? ? ? ? L ? ? ? ? ? ? ? 2.336 ? 
metalc ? metalc4 A SG CYS 43 A CYS 904 1_555 C ZN ZN . A ZN 1001 1_555 ? ? ? ? L ? ? ? ? ? ? ? 2.311 ? 
covale ? covale1 B C THR 3 C THR 3 1_555 B N MLZ 4 C MLZ 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale2 B C MLZ 4 C MLZ 4 1_555 B N GLN 5 C GLN 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
#
_chem_comp.formula           'Zn 2' 
_chem_comp.formula_weight    65.409 
_chem_comp.id                ZN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'ZINC ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     5YVX 
_atom_sites.fract_transf_matrix[1][1]    0.015055 
_atom_sites.fract_transf_matrix[1][2]    0.008692 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.017385 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.034199 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 ZN A 1 1001 1 ZN ZN . 
D 4 HOH A 1 1101 42 HOH HOH . 
D 4 HOH A 2 1102 49 HOH HOH . 
D 4 HOH A 3 1103 43 HOH HOH . 
D 4 HOH A 4 1104 53 HOH HOH . 
D 4 HOH A 5 1105 29 HOH HOH . 
D 4 HOH A 6 1106 18 HOH HOH . 
D 4 HOH A 7 1107 4 HOH HOH . 
D 4 HOH A 8 1108 81 HOH HOH . 
D 4 HOH A 9 1109 47 HOH HOH . 
D 4 HOH A 10 1110 28 HOH HOH . 
D 4 HOH A 11 1111 14 HOH HOH . 
D 4 HOH A 12 1112 24 HOH HOH . 
D 4 HOH A 13 1113 77 HOH HOH . 
D 4 HOH A 14 1114 7 HOH HOH . 
D 4 HOH A 15 1115 46 HOH HOH . 
D 4 HOH A 16 1116 16 HOH HOH . 
D 4 HOH A 17 1117 32 HOH HOH . 
D 4 HOH A 18 1118 8 HOH HOH . 
D 4 HOH A 19 1119 30 HOH HOH . 
D 4 HOH A 20 1120 21 HOH HOH . 
D 4 HOH A 21 1121 64 HOH HOH . 
D 4 HOH A 22 1122 25 HOH HOH . 
D 4 HOH A 23 1123 45 HOH HOH . 
D 4 HOH A 24 1124 5 HOH HOH . 
D 4 HOH A 25 1125 63 HOH HOH . 
D 4 HOH A 26 1126 76 HOH HOH . 
D 4 HOH A 27 1127 34 HOH HOH . 
D 4 HOH A 28 1128 36 HOH HOH . 
D 4 HOH A 29 1129 10 HOH HOH . 
D 4 HOH A 30 1130 59 HOH HOH . 
D 4 HOH A 31 1131 6 HOH HOH . 
D 4 HOH A 32 1132 73 HOH HOH . 
D 4 HOH A 33 1133 13 HOH HOH . 
D 4 HOH A 34 1134 35 HOH HOH . 
D 4 HOH A 35 1135 62 HOH HOH . 
D 4 HOH A 36 1136 31 HOH HOH . 
D 4 HOH A 37 1137 22 HOH HOH . 
D 4 HOH A 38 1138 23 HOH HOH . 
D 4 HOH A 39 1139 27 HOH HOH . 
D 4 HOH A 40 1140 50 HOH HOH . 
D 4 HOH A 41 1141 1 HOH HOH . 
D 4 HOH A 42 1142 2 HOH HOH . 
D 4 HOH A 43 1143 15 HOH HOH . 
D 4 HOH A 44 1144 79 HOH HOH . 
D 4 HOH A 45 1145 40 HOH HOH . 
D 4 HOH A 46 1146 11 HOH HOH . 
D 4 HOH A 47 1147 69 HOH HOH . 
D 4 HOH A 48 1148 12 HOH HOH . 
D 4 HOH A 49 1149 3 HOH HOH . 
D 4 HOH A 50 1150 66 HOH HOH . 
D 4 HOH A 51 1151 61 HOH HOH . 
D 4 HOH A 52 1152 44 HOH HOH . 
D 4 HOH A 53 1153 9 HOH HOH . 
D 4 HOH A 54 1154 74 HOH HOH . 
D 4 HOH A 55 1155 20 HOH HOH . 
D 4 HOH A 56 1156 54 HOH HOH . 
D 4 HOH A 57 1157 48 HOH HOH . 
D 4 HOH A 58 1158 78 HOH HOH . 
D 4 HOH A 59 1159 84 HOH HOH . 
D 4 HOH A 60 1160 52 HOH HOH . 
D 4 HOH A 61 1161 19 HOH HOH . 
D 4 HOH A 62 1162 80 HOH HOH . 
D 4 HOH A 63 1163 38 HOH HOH . 
D 4 HOH A 64 1164 57 HOH HOH . 
D 4 HOH A 65 1165 83 HOH HOH . 
D 4 HOH A 66 1166 58 HOH HOH . 
D 4 HOH A 67 1167 41 HOH HOH . 
D 4 HOH A 68 1168 67 HOH HOH . 
D 4 HOH A 69 1169 55 HOH HOH . 
D 4 HOH A 70 1170 71 HOH HOH . 
D 4 HOH A 71 1171 51 HOH HOH . 
D 4 HOH A 72 1172 65 HOH HOH . 
D 4 HOH A 73 1173 39 HOH HOH . 
D 4 HOH A 74 1174 37 HOH HOH . 
D 4 HOH A 75 1175 82 HOH HOH . 
E 4 HOH C 1 101 60 HOH HOH . 
E 4 HOH C 2 102 33 HOH HOH . 
E 4 HOH C 3 103 68 HOH HOH . 
E 4 HOH C 4 104 26 HOH HOH . 
E 4 HOH C 5 105 72 HOH HOH . 
E 4 HOH C 6 106 17 HOH HOH . 
E 4 HOH C 7 107 75 HOH HOH . 
E 4 HOH C 8 108 56 HOH HOH . 
E 4 HOH C 9 109 70 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           ZN 
_atom_site.label_atom_id         ZN 
_atom_site.label_comp_id         ZN 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          L 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         C 
_atom_site.label_entity_id       3 
_atom_site.Cartn_x               34.863 
_atom_site.Cartn_y               105.535 
_atom_site.Cartn_z               26.373 
_atom_site.occupancy             0.88 
_atom_site.B_iso_or_equiv        21.71 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          ZN 
_atom_site.auth_comp_id          ZN 
_atom_site.auth_seq_id           1001 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              60 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    1 
_model_server_stats.query_time_ms           265 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           1 
#