data_5YVZ
#
_model_server_result.job_id            yKr1Fy5XMDYX2-I-1_TA-w 
_model_server_result.datetime_utc      '2024-11-21 14:21:18' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5yvz 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":408}' 
#
_entry.id    5YVZ 
#
_exptl.entry_id    5YVZ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              59.044 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'ACETATE ION' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5YVZ 
_cell.length_a            45.71 
_cell.length_b            59.204 
_cell.length_c            116.264 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5YVZ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 6 I N N 
? 6 J N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 146 A HIS 146 1_555 B FE FE . A FE 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.277 ? 
metalc ? metalc2 A OD1 ASP 148 A ASP 148 1_555 B FE FE . A FE 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.072 ? 
metalc ? metalc3 A NE2 HIS 260 A HIS 260 1_555 B FE FE . A FE 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.222 ? 
metalc ? metalc4 B FE FE . A FE 401 1_555 C O1 AKG . A AKG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.113 ? 
metalc ? metalc5 B FE FE . A FE 401 1_555 C O5 AKG . A AKG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.201 ? 
metalc ? metalc6 B FE FE . A FE 401 1_555 L O HOH . A HOH 582 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.219 ? 
#
_chem_comp.formula           'C2 H3 O2 -1' 
_chem_comp.formula_weight    59.044 
_chem_comp.id                ACT 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'ACETATE ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C O ACT doub 1 n n 
C OXT ACT sing 2 n n 
C CH3 ACT sing 3 n n 
CH3 H1 ACT sing 4 n n 
CH3 H2 ACT sing 5 n n 
CH3 H3 ACT sing 6 n n 
#
_atom_sites.entry_id                     5YVZ 
_atom_sites.fract_transf_matrix[1][1]    0.021877 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.016891 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008601 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 FE A 1 401 1 FE FE . 
C 3 AKG A 1 402 1 AKG AKG . 
D 4 GOL A 1 403 1 GOL GOL . 
E 5 PG4 A 1 404 2 PG4 PG4 . 
F 5 PG4 A 1 405 4 PG4 PG4 . 
G 5 PG4 A 1 406 5 PG4 PG4 . 
H 5 PG4 A 1 407 6 PG4 PG4 . 
I 6 ACT A 1 408 2 ACT ACT . 
J 6 ACT A 1 409 4 ACT ACT . 
K 7 SO4 A 1 410 1 SO4 SO4 . 
L 8 HOH A 1 501 34 HOH HOH . 
L 8 HOH A 2 502 29 HOH HOH . 
L 8 HOH A 3 503 67 HOH HOH . 
L 8 HOH A 4 504 124 HOH HOH . 
L 8 HOH A 5 505 138 HOH HOH . 
L 8 HOH A 6 506 145 HOH HOH . 
L 8 HOH A 7 507 174 HOH HOH . 
L 8 HOH A 8 508 88 HOH HOH . 
L 8 HOH A 9 509 77 HOH HOH . 
L 8 HOH A 10 510 42 HOH HOH . 
L 8 HOH A 11 511 134 HOH HOH . 
L 8 HOH A 12 512 43 HOH HOH . 
L 8 HOH A 13 513 56 HOH HOH . 
L 8 HOH A 14 514 79 HOH HOH . 
L 8 HOH A 15 515 40 HOH HOH . 
L 8 HOH A 16 516 55 HOH HOH . 
L 8 HOH A 17 517 151 HOH HOH . 
L 8 HOH A 18 518 90 HOH HOH . 
L 8 HOH A 19 519 128 HOH HOH . 
L 8 HOH A 20 520 82 HOH HOH . 
L 8 HOH A 21 521 149 HOH HOH . 
L 8 HOH A 22 522 17 HOH HOH . 
L 8 HOH A 23 523 10 HOH HOH . 
L 8 HOH A 24 524 11 HOH HOH . 
L 8 HOH A 25 525 75 HOH HOH . 
L 8 HOH A 26 526 115 HOH HOH . 
L 8 HOH A 27 527 3 HOH HOH . 
L 8 HOH A 28 528 32 HOH HOH . 
L 8 HOH A 29 529 9 HOH HOH . 
L 8 HOH A 30 530 161 HOH HOH . 
L 8 HOH A 31 531 139 HOH HOH . 
L 8 HOH A 32 532 39 HOH HOH . 
L 8 HOH A 33 533 120 HOH HOH . 
L 8 HOH A 34 534 106 HOH HOH . 
L 8 HOH A 35 535 59 HOH HOH . 
L 8 HOH A 36 536 54 HOH HOH . 
L 8 HOH A 37 537 22 HOH HOH . 
L 8 HOH A 38 538 31 HOH HOH . 
L 8 HOH A 39 539 76 HOH HOH . 
L 8 HOH A 40 540 74 HOH HOH . 
L 8 HOH A 41 541 47 HOH HOH . 
L 8 HOH A 42 542 51 HOH HOH . 
L 8 HOH A 43 543 26 HOH HOH . 
L 8 HOH A 44 544 19 HOH HOH . 
L 8 HOH A 45 545 14 HOH HOH . 
L 8 HOH A 46 546 72 HOH HOH . 
L 8 HOH A 47 547 48 HOH HOH . 
L 8 HOH A 48 548 18 HOH HOH . 
L 8 HOH A 49 549 23 HOH HOH . 
L 8 HOH A 50 550 46 HOH HOH . 
L 8 HOH A 51 551 25 HOH HOH . 
L 8 HOH A 52 552 85 HOH HOH . 
L 8 HOH A 53 553 146 HOH HOH . 
L 8 HOH A 54 554 137 HOH HOH . 
L 8 HOH A 55 555 24 HOH HOH . 
L 8 HOH A 56 556 65 HOH HOH . 
L 8 HOH A 57 557 38 HOH HOH . 
L 8 HOH A 58 558 111 HOH HOH . 
L 8 HOH A 59 559 96 HOH HOH . 
L 8 HOH A 60 560 52 HOH HOH . 
L 8 HOH A 61 561 50 HOH HOH . 
L 8 HOH A 62 562 64 HOH HOH . 
L 8 HOH A 63 563 4 HOH HOH . 
L 8 HOH A 64 564 89 HOH HOH . 
L 8 HOH A 65 565 15 HOH HOH . 
L 8 HOH A 66 566 8 HOH HOH . 
L 8 HOH A 67 567 86 HOH HOH . 
L 8 HOH A 68 568 68 HOH HOH . 
L 8 HOH A 69 569 116 HOH HOH . 
L 8 HOH A 70 570 81 HOH HOH . 
L 8 HOH A 71 571 61 HOH HOH . 
L 8 HOH A 72 572 123 HOH HOH . 
L 8 HOH A 73 573 37 HOH HOH . 
L 8 HOH A 74 574 62 HOH HOH . 
L 8 HOH A 75 575 84 HOH HOH . 
L 8 HOH A 76 576 172 HOH HOH . 
L 8 HOH A 77 577 49 HOH HOH . 
L 8 HOH A 78 578 2 HOH HOH . 
L 8 HOH A 79 579 57 HOH HOH . 
L 8 HOH A 80 580 20 HOH HOH . 
L 8 HOH A 81 581 60 HOH HOH . 
L 8 HOH A 82 582 1 HOH HOH . 
L 8 HOH A 83 583 113 HOH HOH . 
L 8 HOH A 84 584 53 HOH HOH . 
L 8 HOH A 85 585 118 HOH HOH . 
L 8 HOH A 86 586 107 HOH HOH . 
L 8 HOH A 87 587 87 HOH HOH . 
L 8 HOH A 88 588 6 HOH HOH . 
L 8 HOH A 89 589 133 HOH HOH . 
L 8 HOH A 90 590 104 HOH HOH . 
L 8 HOH A 91 591 92 HOH HOH . 
L 8 HOH A 92 592 66 HOH HOH . 
L 8 HOH A 93 593 93 HOH HOH . 
L 8 HOH A 94 594 144 HOH HOH . 
L 8 HOH A 95 595 21 HOH HOH . 
L 8 HOH A 96 596 83 HOH HOH . 
L 8 HOH A 97 597 13 HOH HOH . 
L 8 HOH A 98 598 165 HOH HOH . 
L 8 HOH A 99 599 35 HOH HOH . 
L 8 HOH A 100 600 162 HOH HOH . 
L 8 HOH A 101 601 28 HOH HOH . 
L 8 HOH A 102 602 63 HOH HOH . 
L 8 HOH A 103 603 71 HOH HOH . 
L 8 HOH A 104 604 7 HOH HOH . 
L 8 HOH A 105 605 191 HOH HOH . 
L 8 HOH A 106 606 45 HOH HOH . 
L 8 HOH A 107 607 150 HOH HOH . 
L 8 HOH A 108 608 58 HOH HOH . 
L 8 HOH A 109 609 186 HOH HOH . 
L 8 HOH A 110 610 36 HOH HOH . 
L 8 HOH A 111 611 33 HOH HOH . 
L 8 HOH A 112 612 95 HOH HOH . 
L 8 HOH A 113 613 167 HOH HOH . 
L 8 HOH A 114 614 41 HOH HOH . 
L 8 HOH A 115 615 12 HOH HOH . 
L 8 HOH A 116 616 131 HOH HOH . 
L 8 HOH A 117 617 5 HOH HOH . 
L 8 HOH A 118 618 99 HOH HOH . 
L 8 HOH A 119 619 178 HOH HOH . 
L 8 HOH A 120 620 70 HOH HOH . 
L 8 HOH A 121 621 78 HOH HOH . 
L 8 HOH A 122 622 27 HOH HOH . 
L 8 HOH A 123 623 130 HOH HOH . 
L 8 HOH A 124 624 192 HOH HOH . 
L 8 HOH A 125 625 158 HOH HOH . 
L 8 HOH A 126 626 44 HOH HOH . 
L 8 HOH A 127 627 143 HOH HOH . 
L 8 HOH A 128 628 193 HOH HOH . 
L 8 HOH A 129 629 112 HOH HOH . 
L 8 HOH A 130 630 170 HOH HOH . 
L 8 HOH A 131 631 117 HOH HOH . 
L 8 HOH A 132 632 103 HOH HOH . 
L 8 HOH A 133 633 30 HOH HOH . 
L 8 HOH A 134 634 190 HOH HOH . 
L 8 HOH A 135 635 166 HOH HOH . 
L 8 HOH A 136 636 189 HOH HOH . 
L 8 HOH A 137 637 171 HOH HOH . 
L 8 HOH A 138 638 73 HOH HOH . 
L 8 HOH A 139 639 141 HOH HOH . 
L 8 HOH A 140 640 136 HOH HOH . 
L 8 HOH A 141 641 100 HOH HOH . 
L 8 HOH A 142 642 122 HOH HOH . 
L 8 HOH A 143 643 105 HOH HOH . 
L 8 HOH A 144 644 175 HOH HOH . 
L 8 HOH A 145 645 182 HOH HOH . 
L 8 HOH A 146 646 126 HOH HOH . 
L 8 HOH A 147 647 102 HOH HOH . 
L 8 HOH A 148 648 125 HOH HOH . 
L 8 HOH A 149 649 135 HOH HOH . 
L 8 HOH A 150 650 94 HOH HOH . 
L 8 HOH A 151 651 168 HOH HOH . 
L 8 HOH A 152 652 101 HOH HOH . 
L 8 HOH A 153 653 98 HOH HOH . 
L 8 HOH A 154 654 140 HOH HOH . 
L 8 HOH A 155 655 156 HOH HOH . 
L 8 HOH A 156 656 121 HOH HOH . 
L 8 HOH A 157 657 127 HOH HOH . 
L 8 HOH A 158 658 80 HOH HOH . 
L 8 HOH A 159 659 147 HOH HOH . 
L 8 HOH A 160 660 91 HOH HOH . 
L 8 HOH A 161 661 157 HOH HOH . 
L 8 HOH A 162 662 129 HOH HOH . 
L 8 HOH A 163 663 114 HOH HOH . 
L 8 HOH A 164 664 173 HOH HOH . 
L 8 HOH A 165 665 148 HOH HOH . 
L 8 HOH A 166 666 154 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C ACT . . . I 6 13.647 -20.431 -12.524 1 61.53 ? C ACT 408 A 1 
HETATM 2 O O ACT . . . I 6 13.894 -21.657 -12.515 1 63.16 ? O ACT 408 A 1 
HETATM 3 O OXT ACT . . . I 6 13.524 -19.886 -11.405 1 59.83 ? OXT ACT 408 A 1 
HETATM 4 C CH3 ACT . . . I 6 13.508 -19.662 -13.805 1 62.98 ? CH3 ACT 408 A 1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           279 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           4 
#