data_5YW0 # _model_server_result.job_id QMjPaH2x4vH2e6WErBxcog _model_server_result.datetime_utc '2024-11-04 22:41:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5yw0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 5YW0 # _exptl.entry_id 5YW0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 194.226 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'TETRAETHYLENE GLYCOL' _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5YW0 _cell.length_a 45.716 _cell.length_b 59.274 _cell.length_c 116.18 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5YW0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 146 A HIS 146 1_555 G FE FE . A FE 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.293 ? metalc ? metalc2 A OD1 ASP 148 A ASP 148 1_555 G FE FE . A FE 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.132 ? metalc ? metalc3 A NE2 HIS 260 A HIS 260 1_555 G FE FE . A FE 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.192 ? metalc ? metalc4 G FE FE . A FE 406 1_555 I O1 SIN . A SIN 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.148 ? metalc ? metalc5 G FE FE . A FE 406 1_555 N O HOH . A HOH 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.495 ? metalc ? metalc6 G FE FE . A FE 406 1_555 N O HOH . A HOH 509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.069 ? # _chem_comp.formula 'C8 H18 O5' _chem_comp.formula_weight 194.226 _chem_comp.id PG4 _chem_comp.mon_nstd_flag . _chem_comp.name 'TETRAETHYLENE GLYCOL' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C1 PG4 sing 243 n n O1 HO1 PG4 sing 244 n n C1 C2 PG4 sing 245 n n C1 H11 PG4 sing 246 n n C1 H12 PG4 sing 247 n n C2 O2 PG4 sing 248 n n C2 H21 PG4 sing 249 n n C2 H22 PG4 sing 250 n n O2 C3 PG4 sing 251 n n C3 C4 PG4 sing 252 n n C3 H31 PG4 sing 253 n n C3 H32 PG4 sing 254 n n C4 O3 PG4 sing 255 n n C4 H41 PG4 sing 256 n n C4 H42 PG4 sing 257 n n O3 C5 PG4 sing 258 n n C5 C6 PG4 sing 259 n n C5 H51 PG4 sing 260 n n C5 H52 PG4 sing 261 n n C6 O4 PG4 sing 262 n n C6 H61 PG4 sing 263 n n C6 H62 PG4 sing 264 n n O4 C7 PG4 sing 265 n n C7 C8 PG4 sing 266 n n C7 H71 PG4 sing 267 n n C7 H72 PG4 sing 268 n n C8 O5 PG4 sing 269 n n C8 H81 PG4 sing 270 n n C8 H82 PG4 sing 271 n n O5 HO5 PG4 sing 272 n n # _atom_sites.entry_id 5YW0 _atom_sites.fract_transf_matrix[1][1] 0.021874 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016871 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008607 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PG4 A 1 401 1 PG4 PG4 . C 2 PG4 A 1 402 2 PG4 PG4 . D 2 PG4 A 1 403 5 PG4 PG4 . E 2 PG4 A 1 404 6 PG4 PG4 . F 2 PG4 A 1 405 7 PG4 PG4 . G 3 FE A 1 406 1 FE FE . H 4 GOL A 1 407 1 GOL GOL . I 5 SIN A 1 408 1 SIN SIN . J 6 ACT A 1 409 1 ACT ACT . K 6 ACT A 1 410 2 ACT ACT . L 6 ACT A 1 411 3 ACT ACT . M 6 ACT A 1 412 4 ACT ACT . N 7 HOH A 1 501 170 HOH HOH . N 7 HOH A 2 502 222 HOH HOH . N 7 HOH A 3 503 27 HOH HOH . N 7 HOH A 4 504 111 HOH HOH . N 7 HOH A 5 505 142 HOH HOH . N 7 HOH A 6 506 156 HOH HOH . N 7 HOH A 7 507 187 HOH HOH . N 7 HOH A 8 508 205 HOH HOH . N 7 HOH A 9 509 26 HOH HOH . N 7 HOH A 10 510 106 HOH HOH . N 7 HOH A 11 511 216 HOH HOH . N 7 HOH A 12 512 101 HOH HOH . N 7 HOH A 13 513 61 HOH HOH . N 7 HOH A 14 514 67 HOH HOH . N 7 HOH A 15 515 173 HOH HOH . N 7 HOH A 16 516 137 HOH HOH . N 7 HOH A 17 517 159 HOH HOH . N 7 HOH A 18 518 42 HOH HOH . N 7 HOH A 19 519 93 HOH HOH . N 7 HOH A 20 520 114 HOH HOH . N 7 HOH A 21 521 141 HOH HOH . N 7 HOH A 22 522 149 HOH HOH . N 7 HOH A 23 523 124 HOH HOH . N 7 HOH A 24 524 145 HOH HOH . N 7 HOH A 25 525 103 HOH HOH . N 7 HOH A 26 526 112 HOH HOH . N 7 HOH A 27 527 65 HOH HOH . N 7 HOH A 28 528 77 HOH HOH . N 7 HOH A 29 529 75 HOH HOH . N 7 HOH A 30 530 51 HOH HOH . N 7 HOH A 31 531 80 HOH HOH . N 7 HOH A 32 532 68 HOH HOH . N 7 HOH A 33 533 20 HOH HOH . N 7 HOH A 34 534 192 HOH HOH . N 7 HOH A 35 535 128 HOH HOH . N 7 HOH A 36 536 45 HOH HOH . N 7 HOH A 37 537 23 HOH HOH . N 7 HOH A 38 538 177 HOH HOH . N 7 HOH A 39 539 162 HOH HOH . N 7 HOH A 40 540 167 HOH HOH . N 7 HOH A 41 541 6 HOH HOH . N 7 HOH A 42 542 153 HOH HOH . N 7 HOH A 43 543 32 HOH HOH . N 7 HOH A 44 544 110 HOH HOH . N 7 HOH A 45 545 19 HOH HOH . N 7 HOH A 46 546 82 HOH HOH . N 7 HOH A 47 547 90 HOH HOH . N 7 HOH A 48 548 2 HOH HOH . N 7 HOH A 49 549 119 HOH HOH . N 7 HOH A 50 550 214 HOH HOH . N 7 HOH A 51 551 48 HOH HOH . N 7 HOH A 52 552 69 HOH HOH . N 7 HOH A 53 553 41 HOH HOH . N 7 HOH A 54 554 155 HOH HOH . N 7 HOH A 55 555 21 HOH HOH . N 7 HOH A 56 556 35 HOH HOH . N 7 HOH A 57 557 43 HOH HOH . N 7 HOH A 58 558 18 HOH HOH . N 7 HOH A 59 559 58 HOH HOH . N 7 HOH A 60 560 123 HOH HOH . N 7 HOH A 61 561 127 HOH HOH . N 7 HOH A 62 562 22 HOH HOH . N 7 HOH A 63 563 15 HOH HOH . N 7 HOH A 64 564 46 HOH HOH . N 7 HOH A 65 565 88 HOH HOH . N 7 HOH A 66 566 13 HOH HOH . N 7 HOH A 67 567 204 HOH HOH . N 7 HOH A 68 568 76 HOH HOH . N 7 HOH A 69 569 34 HOH HOH . N 7 HOH A 70 570 36 HOH HOH . N 7 HOH A 71 571 30 HOH HOH . N 7 HOH A 72 572 70 HOH HOH . N 7 HOH A 73 573 72 HOH HOH . N 7 HOH A 74 574 104 HOH HOH . N 7 HOH A 75 575 243 HOH HOH . N 7 HOH A 76 576 163 HOH HOH . N 7 HOH A 77 577 66 HOH HOH . N 7 HOH A 78 578 11 HOH HOH . N 7 HOH A 79 579 86 HOH HOH . N 7 HOH A 80 580 33 HOH HOH . N 7 HOH A 81 581 53 HOH HOH . N 7 HOH A 82 582 183 HOH HOH . N 7 HOH A 83 583 168 HOH HOH . N 7 HOH A 84 584 96 HOH HOH . N 7 HOH A 85 585 60 HOH HOH . N 7 HOH A 86 586 217 HOH HOH . N 7 HOH A 87 587 79 HOH HOH . N 7 HOH A 88 588 140 HOH HOH . N 7 HOH A 89 589 97 HOH HOH . N 7 HOH A 90 590 208 HOH HOH . N 7 HOH A 91 591 54 HOH HOH . N 7 HOH A 92 592 56 HOH HOH . N 7 HOH A 93 593 108 HOH HOH . N 7 HOH A 94 594 113 HOH HOH . N 7 HOH A 95 595 50 HOH HOH . N 7 HOH A 96 596 212 HOH HOH . N 7 HOH A 97 597 5 HOH HOH . N 7 HOH A 98 598 17 HOH HOH . N 7 HOH A 99 599 133 HOH HOH . N 7 HOH A 100 600 85 HOH HOH . N 7 HOH A 101 601 131 HOH HOH . N 7 HOH A 102 602 47 HOH HOH . N 7 HOH A 103 603 248 HOH HOH . N 7 HOH A 104 604 1 HOH HOH . N 7 HOH A 105 605 49 HOH HOH . N 7 HOH A 106 606 100 HOH HOH . N 7 HOH A 107 607 38 HOH HOH . N 7 HOH A 108 608 4 HOH HOH . N 7 HOH A 109 609 143 HOH HOH . N 7 HOH A 110 610 185 HOH HOH . N 7 HOH A 111 611 10 HOH HOH . N 7 HOH A 112 612 175 HOH HOH . N 7 HOH A 113 613 158 HOH HOH . N 7 HOH A 114 614 64 HOH HOH . N 7 HOH A 115 615 190 HOH HOH . N 7 HOH A 116 616 57 HOH HOH . N 7 HOH A 117 617 146 HOH HOH . N 7 HOH A 118 618 150 HOH HOH . N 7 HOH A 119 619 25 HOH HOH . N 7 HOH A 120 620 213 HOH HOH . N 7 HOH A 121 621 55 HOH HOH . N 7 HOH A 122 622 132 HOH HOH . N 7 HOH A 123 623 7 HOH HOH . N 7 HOH A 124 624 179 HOH HOH . N 7 HOH A 125 625 8 HOH HOH . N 7 HOH A 126 626 134 HOH HOH . N 7 HOH A 127 627 99 HOH HOH . N 7 HOH A 128 628 105 HOH HOH . N 7 HOH A 129 629 31 HOH HOH . N 7 HOH A 130 630 84 HOH HOH . N 7 HOH A 131 631 115 HOH HOH . N 7 HOH A 132 632 24 HOH HOH . N 7 HOH A 133 633 98 HOH HOH . N 7 HOH A 134 634 152 HOH HOH . N 7 HOH A 135 635 81 HOH HOH . N 7 HOH A 136 636 73 HOH HOH . N 7 HOH A 137 637 44 HOH HOH . N 7 HOH A 138 638 83 HOH HOH . N 7 HOH A 139 639 245 HOH HOH . N 7 HOH A 140 640 37 HOH HOH . N 7 HOH A 141 641 169 HOH HOH . N 7 HOH A 142 642 3 HOH HOH . N 7 HOH A 143 643 40 HOH HOH . N 7 HOH A 144 644 126 HOH HOH . N 7 HOH A 145 645 39 HOH HOH . N 7 HOH A 146 646 28 HOH HOH . N 7 HOH A 147 647 14 HOH HOH . N 7 HOH A 148 648 116 HOH HOH . N 7 HOH A 149 649 92 HOH HOH . N 7 HOH A 150 650 139 HOH HOH . N 7 HOH A 151 651 136 HOH HOH . N 7 HOH A 152 652 233 HOH HOH . N 7 HOH A 153 653 196 HOH HOH . N 7 HOH A 154 654 89 HOH HOH . N 7 HOH A 155 655 129 HOH HOH . N 7 HOH A 156 656 29 HOH HOH . N 7 HOH A 157 657 234 HOH HOH . N 7 HOH A 158 658 237 HOH HOH . N 7 HOH A 159 659 201 HOH HOH . N 7 HOH A 160 660 224 HOH HOH . N 7 HOH A 161 661 161 HOH HOH . N 7 HOH A 162 662 52 HOH HOH . N 7 HOH A 163 663 203 HOH HOH . N 7 HOH A 164 664 200 HOH HOH . N 7 HOH A 165 665 94 HOH HOH . N 7 HOH A 166 666 180 HOH HOH . N 7 HOH A 167 667 125 HOH HOH . N 7 HOH A 168 668 12 HOH HOH . N 7 HOH A 169 669 9 HOH HOH . N 7 HOH A 170 670 95 HOH HOH . N 7 HOH A 171 671 194 HOH HOH . N 7 HOH A 172 672 191 HOH HOH . N 7 HOH A 173 673 148 HOH HOH . N 7 HOH A 174 674 193 HOH HOH . N 7 HOH A 175 675 87 HOH HOH . N 7 HOH A 176 676 62 HOH HOH . N 7 HOH A 177 677 130 HOH HOH . N 7 HOH A 178 678 109 HOH HOH . N 7 HOH A 179 679 144 HOH HOH . N 7 HOH A 180 680 184 HOH HOH . N 7 HOH A 181 681 220 HOH HOH . N 7 HOH A 182 682 242 HOH HOH . N 7 HOH A 183 683 178 HOH HOH . N 7 HOH A 184 684 211 HOH HOH . N 7 HOH A 185 685 165 HOH HOH . N 7 HOH A 186 686 59 HOH HOH . N 7 HOH A 187 687 147 HOH HOH . N 7 HOH A 188 688 91 HOH HOH . N 7 HOH A 189 689 215 HOH HOH . N 7 HOH A 190 690 182 HOH HOH . N 7 HOH A 191 691 202 HOH HOH . N 7 HOH A 192 692 71 HOH HOH . N 7 HOH A 193 693 239 HOH HOH . N 7 HOH A 194 694 230 HOH HOH . N 7 HOH A 195 695 195 HOH HOH . N 7 HOH A 196 696 102 HOH HOH . N 7 HOH A 197 697 160 HOH HOH . N 7 HOH A 198 698 221 HOH HOH . N 7 HOH A 199 699 235 HOH HOH . N 7 HOH A 200 700 135 HOH HOH . N 7 HOH A 201 701 227 HOH HOH . N 7 HOH A 202 702 181 HOH HOH . N 7 HOH A 203 703 120 HOH HOH . N 7 HOH A 204 704 121 HOH HOH . N 7 HOH A 205 705 154 HOH HOH . N 7 HOH A 206 706 74 HOH HOH . N 7 HOH A 207 707 236 HOH HOH . N 7 HOH A 208 708 118 HOH HOH . N 7 HOH A 209 709 138 HOH HOH . N 7 HOH A 210 710 188 HOH HOH . N 7 HOH A 211 711 117 HOH HOH . N 7 HOH A 212 712 198 HOH HOH . N 7 HOH A 213 713 207 HOH HOH . N 7 HOH A 214 714 107 HOH HOH . N 7 HOH A 215 715 210 HOH HOH . N 7 HOH A 216 716 197 HOH HOH . N 7 HOH A 217 717 189 HOH HOH . N 7 HOH A 218 718 176 HOH HOH . N 7 HOH A 219 719 232 HOH HOH . N 7 HOH A 220 720 225 HOH HOH . N 7 HOH A 221 721 164 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O2 PG4 . . . B 2 -4.789 2.317 -32.672 1 56.22 ? O2 PG4 401 A 1 HETATM 2 C C3 PG4 . . . B 2 -4.424 1.831 -33.91 1 54.72 ? C3 PG4 401 A 1 HETATM 3 C C4 PG4 . . . B 2 -3.006 1.398 -34.056 1 56.73 ? C4 PG4 401 A 1 HETATM 4 O O3 PG4 . . . B 2 -2.703 0.345 -34.892 1 63.18 ? O3 PG4 401 A 1 HETATM 5 C C5 PG4 . . . B 2 -1.432 -0.185 -34.838 1 65.04 ? C5 PG4 401 A 1 HETATM 6 C C6 PG4 . . . B 2 -1.306 -1.578 -34.325 1 64.89 ? C6 PG4 401 A 1 HETATM 7 O O4 PG4 . . . B 2 -0.764 -1.745 -33.069 1 63.41 ? O4 PG4 401 A 1 HETATM 8 C C7 PG4 . . . B 2 -1.539 -2.336 -32.094 1 55.73 ? C7 PG4 401 A 1 HETATM 9 C C8 PG4 . . . B 2 -0.878 -2.796 -30.842 1 51.99 ? C8 PG4 401 A 1 HETATM 10 O O5 PG4 . . . B 2 -1.638 -2.806 -29.69 1 48.7 ? O5 PG4 401 A 1 # _model_server_stats.io_time_ms 45 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 271 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 10 #