data_5YWH # _model_server_result.job_id -rvT6IixOIKYE-k45zNNkg _model_server_result.datetime_utc '2024-10-10 21:25:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ywh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":502}' # _entry.id 5YWH # _exptl.entry_id 5YWH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 350.393 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '[1,3-diethyl-2,2-bis(oxidanylidene)-2$l^{6},1,3-benzothiadiazol-5-yl]-(1-methyl-5-oxidanyl-pyrazol-4-yl)methanone' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5YWH _cell.length_a 95.745 _cell.length_b 95.745 _cell.length_c 196.595 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5YWH _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 401 A CYS 401 1_555 A SG CYS 416 A CYS 416 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf2 B SG CYS 401 B CYS 401 1_555 B SG CYS 416 B CYS 416 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? metalc ? metalc1 A NE2 HIS 226 A HIS 226 1_555 C FE FE . A FE 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.359 ? metalc ? metalc2 A NE2 HIS 308 A HIS 308 1_555 C FE FE . A FE 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.414 ? metalc ? metalc3 A OE1 GLU 394 A GLU 394 1_555 C FE FE . A FE 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? metalc ? metalc4 C FE FE . A FE 501 1_555 D O12 92U . A 92U 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.312 ? metalc ? metalc5 C FE FE . A FE 501 1_555 D O17 92U . A 92U 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.55 ? metalc ? metalc6 B NE2 HIS 226 B HIS 226 1_555 E FE FE . B FE 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.494 ? metalc ? metalc7 B NE2 HIS 308 B HIS 308 1_555 E FE FE . B FE 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.628 ? metalc ? metalc8 B OE1 GLU 394 B GLU 394 1_555 E FE FE . B FE 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.868 ? metalc ? metalc9 E FE FE . B FE 501 1_555 F O12 92U . B 92U 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.917 ? metalc ? metalc10 E FE FE . B FE 501 1_555 F O17 92U . B 92U 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.353 ? # _chem_comp.formula 'C15 H18 N4 O4 S' _chem_comp.formula_weight 350.393 _chem_comp.id 92U _chem_comp.mon_nstd_flag . _chem_comp.name '[1,3-diethyl-2,2-bis(oxidanylidene)-2$l^{6},1,3-benzothiadiazol-5-yl]-(1-methyl-5-oxidanyl-pyrazol-4-yl)methanone' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C18 N14 92U sing 1 n n N14 N15 92U sing 2 n y N14 C13 92U sing 3 n y N15 C16 92U doub 4 n y C13 O17 92U sing 5 n n C13 C11 92U doub 6 n y C16 C11 92U sing 7 n y C20 C19 92U sing 8 n n C11 C10 92U sing 9 n n C19 N09 92U sing 10 n n O24 S08 92U doub 11 n n C10 C02 92U sing 12 n n C10 O12 92U doub 13 n n C01 C02 92U doub 14 n y C01 C06 92U sing 15 n y N09 C06 92U sing 16 n n N09 S08 92U sing 17 n n C02 C03 92U sing 18 n y C06 C05 92U doub 19 n y S08 N07 92U sing 20 n n S08 O23 92U doub 21 n n C03 C04 92U doub 22 n y C05 N07 92U sing 23 n n C05 C04 92U sing 24 n y N07 C21 92U sing 25 n n C22 C21 92U sing 26 n n C20 H1 92U sing 27 n n C20 H2 92U sing 28 n n C20 H3 92U sing 29 n n C21 H4 92U sing 30 n n C21 H5 92U sing 31 n n C22 H6 92U sing 32 n n C22 H7 92U sing 33 n n C22 H8 92U sing 34 n n C01 H9 92U sing 35 n n C03 H10 92U sing 36 n n C04 H11 92U sing 37 n n C16 H13 92U sing 38 n n C18 H14 92U sing 39 n n C18 H15 92U sing 40 n n C18 H16 92U sing 41 n n C19 H17 92U sing 42 n n C19 H18 92U sing 43 n n O17 H12 92U sing 44 n n # _atom_sites.entry_id 5YWH _atom_sites.fract_transf_matrix[1][1] 0.010444 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010444 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005087 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 FE A 1 501 498 FE FE . D 3 92U A 1 502 501 92U LIG . E 2 FE B 1 501 498 FE FE . F 3 92U B 1 502 501 92U LIG . G 4 HOH A 1 601 47 HOH HOH . G 4 HOH A 2 602 138 HOH HOH . G 4 HOH A 3 603 46 HOH HOH . G 4 HOH A 4 604 122 HOH HOH . G 4 HOH A 5 605 52 HOH HOH . G 4 HOH A 6 606 9 HOH HOH . G 4 HOH A 7 607 49 HOH HOH . G 4 HOH A 8 608 75 HOH HOH . G 4 HOH A 9 609 83 HOH HOH . G 4 HOH A 10 610 59 HOH HOH . G 4 HOH A 11 611 134 HOH HOH . G 4 HOH A 12 612 119 HOH HOH . G 4 HOH A 13 613 16 HOH HOH . G 4 HOH A 14 614 135 HOH HOH . G 4 HOH A 15 615 23 HOH HOH . G 4 HOH A 16 616 29 HOH HOH . G 4 HOH A 17 617 6 HOH HOH . G 4 HOH A 18 618 43 HOH HOH . G 4 HOH A 19 619 13 HOH HOH . G 4 HOH A 20 620 36 HOH HOH . G 4 HOH A 21 621 40 HOH HOH . G 4 HOH A 22 622 15 HOH HOH . G 4 HOH A 23 623 28 HOH HOH . G 4 HOH A 24 624 35 HOH HOH . G 4 HOH A 25 625 34 HOH HOH . G 4 HOH A 26 626 42 HOH HOH . G 4 HOH A 27 627 33 HOH HOH . G 4 HOH A 28 628 30 HOH HOH . G 4 HOH A 29 629 39 HOH HOH . G 4 HOH A 30 630 32 HOH HOH . G 4 HOH A 31 631 4 HOH HOH . G 4 HOH A 32 632 5 HOH HOH . G 4 HOH A 33 633 50 HOH HOH . G 4 HOH A 34 634 26 HOH HOH . G 4 HOH A 35 635 71 HOH HOH . G 4 HOH A 36 636 31 HOH HOH . G 4 HOH A 37 637 82 HOH HOH . G 4 HOH A 38 638 76 HOH HOH . G 4 HOH A 39 639 99 HOH HOH . G 4 HOH A 40 640 84 HOH HOH . G 4 HOH A 41 641 65 HOH HOH . G 4 HOH A 42 642 54 HOH HOH . G 4 HOH A 43 643 97 HOH HOH . G 4 HOH A 44 644 77 HOH HOH . G 4 HOH A 45 645 44 HOH HOH . G 4 HOH A 46 646 25 HOH HOH . G 4 HOH A 47 647 79 HOH HOH . G 4 HOH A 48 648 139 HOH HOH . G 4 HOH A 49 649 53 HOH HOH . G 4 HOH A 50 650 141 HOH HOH . G 4 HOH A 51 651 69 HOH HOH . G 4 HOH A 52 652 132 HOH HOH . G 4 HOH A 53 653 115 HOH HOH . G 4 HOH A 54 654 51 HOH HOH . G 4 HOH A 55 655 64 HOH HOH . G 4 HOH A 56 656 102 HOH HOH . G 4 HOH A 57 657 63 HOH HOH . H 4 HOH B 1 601 3 HOH HOH . H 4 HOH B 2 602 21 HOH HOH . H 4 HOH B 3 603 24 HOH HOH . H 4 HOH B 4 604 8 HOH HOH . H 4 HOH B 5 605 38 HOH HOH . H 4 HOH B 6 606 92 HOH HOH . H 4 HOH B 7 607 80 HOH HOH . H 4 HOH B 8 608 88 HOH HOH . H 4 HOH B 9 609 1 HOH HOH . H 4 HOH B 10 610 22 HOH HOH . H 4 HOH B 11 611 55 HOH HOH . H 4 HOH B 12 612 45 HOH HOH . H 4 HOH B 13 613 94 HOH HOH . H 4 HOH B 14 614 66 HOH HOH . H 4 HOH B 15 615 10 HOH HOH . H 4 HOH B 16 616 128 HOH HOH . H 4 HOH B 17 617 27 HOH HOH . H 4 HOH B 18 618 105 HOH HOH . H 4 HOH B 19 619 14 HOH HOH . H 4 HOH B 20 620 111 HOH HOH . H 4 HOH B 21 621 7 HOH HOH . H 4 HOH B 22 622 78 HOH HOH . H 4 HOH B 23 623 12 HOH HOH . H 4 HOH B 24 624 95 HOH HOH . H 4 HOH B 25 625 72 HOH HOH . H 4 HOH B 26 626 70 HOH HOH . H 4 HOH B 27 627 37 HOH HOH . H 4 HOH B 28 628 85 HOH HOH . H 4 HOH B 29 629 11 HOH HOH . H 4 HOH B 30 630 110 HOH HOH . H 4 HOH B 31 631 58 HOH HOH . H 4 HOH B 32 632 17 HOH HOH . H 4 HOH B 33 633 81 HOH HOH . H 4 HOH B 34 634 73 HOH HOH . H 4 HOH B 35 635 57 HOH HOH . H 4 HOH B 36 636 68 HOH HOH . H 4 HOH B 37 637 120 HOH HOH . H 4 HOH B 38 638 116 HOH HOH . H 4 HOH B 39 639 86 HOH HOH . H 4 HOH B 40 640 60 HOH HOH . H 4 HOH B 41 641 124 HOH HOH . H 4 HOH B 42 642 114 HOH HOH . H 4 HOH B 43 643 67 HOH HOH . H 4 HOH B 44 644 19 HOH HOH . H 4 HOH B 45 645 20 HOH HOH . H 4 HOH B 46 646 61 HOH HOH . H 4 HOH B 47 647 74 HOH HOH . H 4 HOH B 48 648 93 HOH HOH . H 4 HOH B 49 649 108 HOH HOH . H 4 HOH B 50 650 121 HOH HOH . H 4 HOH B 51 651 127 HOH HOH . H 4 HOH B 52 652 129 HOH HOH . H 4 HOH B 53 653 89 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 92U . . . D 3 26.866 7.549 -18.994 1 34.37 ? C10 92U 502 A 1 HETATM 2 C C13 92U . . . D 3 27.222 9.575 -20.597 1 32.12 ? C13 92U 502 A 1 HETATM 3 C C20 92U . . . D 3 23.994 1.903 -18.849 1 22.44 ? C20 92U 502 A 1 HETATM 4 C C21 92U . . . D 3 29.477 1.509 -16.528 1 33.23 ? C21 92U 502 A 1 HETATM 5 C C22 92U . . . D 3 29.29 1.81 -15.048 1 31.39 ? C22 92U 502 A 1 HETATM 6 C C01 92U . . . D 3 26.549 4.993 -18.953 1 29.34 ? C01 92U 502 A 1 HETATM 7 C C02 92U . . . D 3 27.306 6.159 -18.529 1 36.56 ? C02 92U 502 A 1 HETATM 8 C C03 92U . . . D 3 28.506 6.001 -17.627 1 42.43 ? C03 92U 502 A 1 HETATM 9 C C04 92U . . . D 3 28.915 4.682 -17.193 1 32.06 ? C04 92U 502 A 1 HETATM 10 C C05 92U . . . D 3 28.208 3.579 -17.595 1 33.67 ? C05 92U 502 A 1 HETATM 11 C C06 92U . . . D 3 26.931 3.745 -18.539 1 32.32 ? C06 92U 502 A 1 HETATM 12 N N07 92U . . . D 3 28.393 2.095 -17.297 1 31.29 ? N07 92U 502 A 1 HETATM 13 S S08 92U . . . D 3 27.203 1.309 -17.969 1 36.62 ? S08 92U 502 A 1 HETATM 14 N N09 92U . . . D 3 26.367 2.358 -18.807 1 33.95 ? N09 92U 502 A 1 HETATM 15 C C11 92U . . . D 3 27.642 8.353 -20.039 1 26.65 ? C11 92U 502 A 1 HETATM 16 O O12 92U . . . D 3 25.873 8.003 -18.532 1 32.54 ? O12 92U 502 A 1 HETATM 17 N N14 92U . . . D 3 28.144 9.947 -21.442 1 52.27 ? N14 92U 502 A 1 HETATM 18 N N15 92U . . . D 3 29.123 9.054 -21.474 1 45.08 ? N15 92U 502 A 1 HETATM 19 C C16 92U . . . D 3 28.881 8.065 -20.652 1 32.68 ? C16 92U 502 A 1 HETATM 20 O O17 92U . . . D 3 26.038 10.243 -20.278 1 24.96 ? O17 92U 502 A 1 HETATM 21 C C18 92U . . . D 3 28.111 11.156 -22.236 1 50.12 ? C18 92U 502 A 1 HETATM 22 C C19 92U . . . D 3 25.256 2.053 -19.684 1 30.71 ? C19 92U 502 A 1 HETATM 23 O O23 92U . . . D 3 26.371 0.695 -16.93 1 31.86 ? O23 92U 502 A 1 HETATM 24 O O24 92U . . . D 3 27.78 0.337 -18.892 1 24.99 ? O24 92U 502 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 36 _model_server_stats.query_time_ms 296 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 24 #