data_5YWI # _model_server_result.job_id VW0Cnw55RPzLncZ1bxCKwA _model_server_result.datetime_utc '2024-11-26 23:32:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ywi # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":502}' # _entry.id 5YWI # _exptl.entry_id 5YWI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 329.228 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-{HYDROXY[2-NITRO-4-(TRIFLUOROMETHYL)PHENYL]METHYLENE}CYCLOHEXANE-1,3-DIONE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 102.22 _cell.angle_gamma 90 _cell.entry_id 5YWI _cell.length_a 77.601 _cell.length_b 83.568 _cell.length_c 64.15 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5YWI _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_455 -x-1,y,-z -1 0 0 0 1 0 0 0 -1 -77.601 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 195 A HIS 226 1_555 B CO CO . A CO 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.217 ? metalc ? metalc2 A NE2 HIS 277 A HIS 308 1_555 B CO CO . A CO 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.323 ? metalc ? metalc3 A OE2 GLU 363 A GLU 394 1_555 B CO CO . A CO 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.186 ? metalc ? metalc4 B CO CO . A CO 501 1_555 C O5 NTD . A NTD 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.235 ? metalc ? metalc5 B CO CO . A CO 501 1_555 C O7 NTD . A NTD 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.32 ? # _chem_comp.formula 'C14 H10 F3 N O5' _chem_comp.formula_weight 329.228 _chem_comp.id NTD _chem_comp.mon_nstd_flag . _chem_comp.name 2-{HYDROXY[2-NITRO-4-(TRIFLUOROMETHYL)PHENYL]METHYLENE}CYCLOHEXANE-1,3-DIONE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C5 NTD doub 237 n n C5 C2 NTD sing 238 n n C5 C6 NTD sing 239 n n C2 C3 NTD sing 240 n n C2 H21 NTD sing 241 n n C2 H22 NTD sing 242 n n C3 C4 NTD sing 243 n n C3 H31 NTD sing 244 n n C3 H32 NTD sing 245 n n C4 C1 NTD sing 246 n n C4 H41 NTD sing 247 n n C4 H42 NTD sing 248 n n C1 O5 NTD doub 249 n n C1 C6 NTD sing 250 n n C6 C7 NTD doub 251 n n C7 O7 NTD sing 252 n n C7 C8 NTD sing 253 n n O7 HO7 NTD sing 254 n n C8 C13 NTD doub 255 n y C8 C9 NTD sing 256 n y C13 C12 NTD sing 257 n y C13 H13 NTD sing 258 n n C12 C11 NTD doub 259 n y C12 H12 NTD sing 260 n n C11 C14 NTD sing 261 n n C11 C10 NTD sing 262 n y C14 F2 NTD sing 263 n n C14 F3 NTD sing 264 n n C14 F1 NTD sing 265 n n C10 C9 NTD doub 266 n y C10 H10 NTD sing 267 n n C9 N NTD sing 268 n n N ON2 NTD doub 269 n n N ON1 NTD sing 270 n n # _atom_sites.entry_id 5YWI _atom_sites.fract_transf_matrix[1][1] 0.012886 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002791 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011966 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01595 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CO A 1 501 499 CO CO . C 3 NTD A 1 502 500 NTD LIG . D 4 HOH A 1 601 108 HOH HOH . D 4 HOH A 2 602 22 HOH HOH . D 4 HOH A 3 603 105 HOH HOH . D 4 HOH A 4 604 12 HOH HOH . D 4 HOH A 5 605 20 HOH HOH . D 4 HOH A 6 606 106 HOH HOH . D 4 HOH A 7 607 14 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 NTD . . . C 3 -25.457 -8.134 23.661 1 92.75 ? O1 NTD 502 A 1 HETATM 2 C C5 NTD . . . C 3 -24.364 -7.953 23.242 1 89.32 ? C5 NTD 502 A 1 HETATM 3 C C2 NTD . . . C 3 -23.206 -8.766 23.836 1 85.29 ? C2 NTD 502 A 1 HETATM 4 C C3 NTD . . . C 3 -21.902 -8.756 22.957 1 76.46 ? C3 NTD 502 A 1 HETATM 5 C C4 NTD . . . C 3 -22.228 -8.548 21.441 1 80.05 ? C4 NTD 502 A 1 HETATM 6 C C1 NTD . . . C 3 -22.921 -7.2 21.312 1 82.09 ? C1 NTD 502 A 1 HETATM 7 O O5 NTD . . . C 3 -22.508 -6.356 20.59 1 81.53 ? O5 NTD 502 A 1 HETATM 8 C C6 NTD . . . C 3 -24.124 -6.975 22.143 1 84.28 ? C6 NTD 502 A 1 HETATM 9 C C7 NTD . . . C 3 -25.073 -6.18 21.68 1 85.43 ? C7 NTD 502 A 1 HETATM 10 O O7 NTD . . . C 3 -24.942 -5.658 20.386 1 80.93 ? O7 NTD 502 A 1 HETATM 11 C C8 NTD . . . C 3 -26.089 -5.535 22.622 1 86.32 ? C8 NTD 502 A 1 HETATM 12 C C13 NTD . . . C 3 -25.683 -4.524 23.478 1 86.26 ? C13 NTD 502 A 1 HETATM 13 C C12 NTD . . . C 3 -26.596 -3.929 24.333 1 90.47 ? C12 NTD 502 A 1 HETATM 14 C C11 NTD . . . C 3 -27.917 -4.343 24.331 1 89.97 ? C11 NTD 502 A 1 HETATM 15 C C14 NTD . . . C 3 -28.924 -3.689 25.273 1 87.86 ? C14 NTD 502 A 1 HETATM 16 F F2 NTD . . . C 3 -28.285 -3.273 26.405 1 92.01 ? F2 NTD 502 A 1 HETATM 17 F F3 NTD . . . C 3 -29.494 -2.617 24.65 1 85.58 ? F3 NTD 502 A 1 HETATM 18 F F1 NTD . . . C 3 -29.891 -4.594 25.602 1 86.03 ? F1 NTD 502 A 1 HETATM 19 C C10 NTD . . . C 3 -28.327 -5.351 23.475 1 89.57 ? C10 NTD 502 A 1 HETATM 20 C C9 NTD . . . C 3 -27.415 -5.948 22.618 1 88.65 ? C9 NTD 502 A 1 HETATM 21 N N NTD . . . C 3 -27.86 -7.005 21.726 1 89.89 ? N NTD 502 A 1 HETATM 22 O ON2 NTD . . . C 3 -27.778 -6.873 20.561 1 88.97 ? ON2 NTD 502 A 1 HETATM 23 O ON1 NTD . . . C 3 -28.396 -8.187 22.257 1 90.38 ? ON1 NTD 502 A 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 340 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 23 #