data_5YWM # _model_server_result.job_id UAo_pcltuW72dsOKeDNnVg _model_server_result.datetime_utc '2025-01-10 11:01:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ywm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":403}' # _entry.id 5YWM # _exptl.entry_id 5YWM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 123.109 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NICOTINIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5YWM _cell.length_a 67.292 _cell.length_b 101.023 _cell.length_c 45.764 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5YWM _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C6 H5 N O2' _chem_comp.formula_weight 123.109 _chem_comp.id NIO _chem_comp.mon_nstd_flag . _chem_comp.name 'NICOTINIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N C1 NIO doub 237 n y N C5 NIO sing 238 n y C1 C2 NIO sing 239 n y C1 H1 NIO sing 240 n n C2 C3 NIO doub 241 n y C2 C6 NIO sing 242 n n C3 C4 NIO sing 243 n y C3 H3 NIO sing 244 n n C4 C5 NIO doub 245 n y C4 H4 NIO sing 246 n n C5 H5 NIO sing 247 n n C6 O1 NIO doub 248 n n C6 O2 NIO sing 249 n n O2 HO2 NIO sing 250 n n # _atom_sites.entry_id 5YWM _atom_sites.fract_transf_matrix[1][1] 0.014861 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009899 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.021851 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 X 1 401 1 SO4 SO4 . C 2 SO4 X 1 402 2 SO4 SO4 . D 3 NIO X 1 403 1 NIO NIO . E 4 HOH X 1 501 132 HOH HOH . E 4 HOH X 2 502 124 HOH HOH . E 4 HOH X 3 503 113 HOH HOH . E 4 HOH X 4 504 75 HOH HOH . E 4 HOH X 5 505 71 HOH HOH . E 4 HOH X 6 506 136 HOH HOH . E 4 HOH X 7 507 86 HOH HOH . E 4 HOH X 8 508 3 HOH HOH . E 4 HOH X 9 509 92 HOH HOH . E 4 HOH X 10 510 100 HOH HOH . E 4 HOH X 11 511 15 HOH HOH . E 4 HOH X 12 512 66 HOH HOH . E 4 HOH X 13 513 65 HOH HOH . E 4 HOH X 14 514 53 HOH HOH . E 4 HOH X 15 515 30 HOH HOH . E 4 HOH X 16 516 24 HOH HOH . E 4 HOH X 17 517 45 HOH HOH . E 4 HOH X 18 518 18 HOH HOH . E 4 HOH X 19 519 58 HOH HOH . E 4 HOH X 20 520 82 HOH HOH . E 4 HOH X 21 521 6 HOH HOH . E 4 HOH X 22 522 70 HOH HOH . E 4 HOH X 23 523 102 HOH HOH . E 4 HOH X 24 524 83 HOH HOH . E 4 HOH X 25 525 63 HOH HOH . E 4 HOH X 26 526 25 HOH HOH . E 4 HOH X 27 527 140 HOH HOH . E 4 HOH X 28 528 17 HOH HOH . E 4 HOH X 29 529 7 HOH HOH . E 4 HOH X 30 530 80 HOH HOH . E 4 HOH X 31 531 34 HOH HOH . E 4 HOH X 32 532 141 HOH HOH . E 4 HOH X 33 533 49 HOH HOH . E 4 HOH X 34 534 8 HOH HOH . E 4 HOH X 35 535 93 HOH HOH . E 4 HOH X 36 536 20 HOH HOH . E 4 HOH X 37 537 31 HOH HOH . E 4 HOH X 38 538 103 HOH HOH . E 4 HOH X 39 539 23 HOH HOH . E 4 HOH X 40 540 48 HOH HOH . E 4 HOH X 41 541 104 HOH HOH . E 4 HOH X 42 542 52 HOH HOH . E 4 HOH X 43 543 14 HOH HOH . E 4 HOH X 44 544 109 HOH HOH . E 4 HOH X 45 545 43 HOH HOH . E 4 HOH X 46 546 33 HOH HOH . E 4 HOH X 47 547 76 HOH HOH . E 4 HOH X 48 548 73 HOH HOH . E 4 HOH X 49 549 111 HOH HOH . E 4 HOH X 50 550 123 HOH HOH . E 4 HOH X 51 551 72 HOH HOH . E 4 HOH X 52 552 121 HOH HOH . E 4 HOH X 53 553 12 HOH HOH . E 4 HOH X 54 554 21 HOH HOH . E 4 HOH X 55 555 57 HOH HOH . E 4 HOH X 56 556 44 HOH HOH . E 4 HOH X 57 557 26 HOH HOH . E 4 HOH X 58 558 13 HOH HOH . E 4 HOH X 59 559 4 HOH HOH . E 4 HOH X 60 560 89 HOH HOH . E 4 HOH X 61 561 107 HOH HOH . E 4 HOH X 62 562 5 HOH HOH . E 4 HOH X 63 563 29 HOH HOH . E 4 HOH X 64 564 32 HOH HOH . E 4 HOH X 65 565 116 HOH HOH . E 4 HOH X 66 566 69 HOH HOH . E 4 HOH X 67 567 74 HOH HOH . E 4 HOH X 68 568 16 HOH HOH . E 4 HOH X 69 569 28 HOH HOH . E 4 HOH X 70 570 10 HOH HOH . E 4 HOH X 71 571 68 HOH HOH . E 4 HOH X 72 572 9 HOH HOH . E 4 HOH X 73 573 85 HOH HOH . E 4 HOH X 74 574 22 HOH HOH . E 4 HOH X 75 575 115 HOH HOH . E 4 HOH X 76 576 27 HOH HOH . E 4 HOH X 77 577 101 HOH HOH . E 4 HOH X 78 578 51 HOH HOH . E 4 HOH X 79 579 47 HOH HOH . E 4 HOH X 80 580 39 HOH HOH . E 4 HOH X 81 581 64 HOH HOH . E 4 HOH X 82 582 81 HOH HOH . E 4 HOH X 83 583 98 HOH HOH . E 4 HOH X 84 584 106 HOH HOH . E 4 HOH X 85 585 94 HOH HOH . E 4 HOH X 86 586 11 HOH HOH . E 4 HOH X 87 587 1 HOH HOH . E 4 HOH X 88 588 59 HOH HOH . E 4 HOH X 89 589 41 HOH HOH . E 4 HOH X 90 590 90 HOH HOH . E 4 HOH X 91 591 60 HOH HOH . E 4 HOH X 92 592 50 HOH HOH . E 4 HOH X 93 593 40 HOH HOH . E 4 HOH X 94 594 119 HOH HOH . E 4 HOH X 95 595 95 HOH HOH . E 4 HOH X 96 596 88 HOH HOH . E 4 HOH X 97 597 128 HOH HOH . E 4 HOH X 98 598 61 HOH HOH . E 4 HOH X 99 599 56 HOH HOH . E 4 HOH X 100 600 78 HOH HOH . E 4 HOH X 101 601 130 HOH HOH . E 4 HOH X 102 602 35 HOH HOH . E 4 HOH X 103 603 144 HOH HOH . E 4 HOH X 104 604 19 HOH HOH . E 4 HOH X 105 605 36 HOH HOH . E 4 HOH X 106 606 87 HOH HOH . E 4 HOH X 107 607 118 HOH HOH . E 4 HOH X 108 608 2 HOH HOH . E 4 HOH X 109 609 37 HOH HOH . E 4 HOH X 110 610 112 HOH HOH . E 4 HOH X 111 611 126 HOH HOH . E 4 HOH X 112 612 125 HOH HOH . E 4 HOH X 113 613 62 HOH HOH . E 4 HOH X 114 614 120 HOH HOH . E 4 HOH X 115 615 137 HOH HOH . E 4 HOH X 116 616 108 HOH HOH . E 4 HOH X 117 617 105 HOH HOH . E 4 HOH X 118 618 139 HOH HOH . E 4 HOH X 119 619 122 HOH HOH . E 4 HOH X 120 620 138 HOH HOH . E 4 HOH X 121 621 131 HOH HOH . E 4 HOH X 122 622 99 HOH HOH . E 4 HOH X 123 623 110 HOH HOH . E 4 HOH X 124 624 97 HOH HOH . E 4 HOH X 125 625 129 HOH HOH . E 4 HOH X 126 626 127 HOH HOH . E 4 HOH X 127 627 134 HOH HOH . E 4 HOH X 128 628 142 HOH HOH . E 4 HOH X 129 629 84 HOH HOH . E 4 HOH X 130 630 143 HOH HOH . E 4 HOH X 131 631 117 HOH HOH . E 4 HOH X 132 632 55 HOH HOH . E 4 HOH X 133 633 133 HOH HOH . E 4 HOH X 134 634 42 HOH HOH . E 4 HOH X 135 635 91 HOH HOH . E 4 HOH X 136 636 96 HOH HOH . E 4 HOH X 137 637 135 HOH HOH . E 4 HOH X 138 638 77 HOH HOH . E 4 HOH X 139 639 54 HOH HOH . E 4 HOH X 140 640 38 HOH HOH . E 4 HOH X 141 641 67 HOH HOH . E 4 HOH X 142 642 46 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N NIO . . . D 3 9.046 123.643 9.253 1 32.78 ? N NIO 403 X 1 HETATM 2 C C1 NIO . . . D 3 8.543 122.524 9.855 1 33.14 ? C1 NIO 403 X 1 HETATM 3 C C2 NIO . . . D 3 7.57 121.683 9.243 1 35.98 ? C2 NIO 403 X 1 HETATM 4 C C3 NIO . . . D 3 7.089 122.007 7.976 1 31.14 ? C3 NIO 403 X 1 HETATM 5 C C4 NIO . . . D 3 7.593 123.147 7.355 1 32.41 ? C4 NIO 403 X 1 HETATM 6 C C5 NIO . . . D 3 8.561 123.919 8.028 1 29.12 ? C5 NIO 403 X 1 HETATM 7 C C6 NIO . . . D 3 7.068 120.421 9.985 1 32.49 ? C6 NIO 403 X 1 HETATM 8 O O1 NIO . . . D 3 7.582 120.131 11.093 1 31.9 ? O1 NIO 403 X 1 HETATM 9 O O2 NIO . . . D 3 6.187 119.744 9.399 1 42.2 ? O2 NIO 403 X 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 234 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 9 #