data_5YX4 # _model_server_result.job_id d3LuyTeYP5Wn8AbTMX41dQ _model_server_result.datetime_utc '2024-11-15 23:29:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5yx4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 5YX4 # _exptl.entry_id 5YX4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 256.253 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "2',4,4'-TRIHYDROXYCHALCONE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5YX4 _cell.length_a 83.221 _cell.length_b 83.221 _cell.length_c 93.127 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5YX4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C15 H12 O4' _chem_comp.formula_weight 256.253 _chem_comp.id HCC _chem_comp.mon_nstd_flag . _chem_comp.name "2',4,4'-TRIHYDROXYCHALCONE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 HCC doub 129 n y C1 C6 HCC sing 130 n y C1 O19 HCC sing 131 n n C2 C3 HCC sing 132 n y C2 H2 HCC sing 133 n n C3 C4 HCC doub 134 n y C3 H3 HCC sing 135 n n C4 C5 HCC sing 136 n y C4 C7 HCC sing 137 n n C5 C6 HCC doub 138 n y C5 O10 HCC sing 139 n n C6 H6 HCC sing 140 n n C7 C8 HCC sing 141 n n C7 O17 HCC doub 142 n n C8 C9 HCC doub 143 e n C8 H8 HCC sing 144 n n C9 C11 HCC sing 145 n n C9 H9 HCC sing 146 n n O10 H10 HCC sing 147 n n C11 C12 HCC doub 148 n y C11 C16 HCC sing 149 n y C12 C13 HCC sing 150 n y C12 H12 HCC sing 151 n n C13 C14 HCC doub 152 n y C13 H13 HCC sing 153 n n C14 C15 HCC sing 154 n y C14 O18 HCC sing 155 n n C15 C16 HCC doub 156 n y C15 H15 HCC sing 157 n n C16 H16 HCC sing 158 n n O18 H18 HCC sing 159 n n O19 H19 HCC sing 160 n n # _atom_sites.entry_id 5YX4 _atom_sites.fract_transf_matrix[1][1] 0.012016 _atom_sites.fract_transf_matrix[1][2] 0.006938 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013875 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010738 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HCC A 1 301 1 HCC HCC . C 3 HOH A 1 401 167 HOH HOH . C 3 HOH A 2 402 158 HOH HOH . C 3 HOH A 3 403 56 HOH HOH . C 3 HOH A 4 404 99 HOH HOH . C 3 HOH A 5 405 29 HOH HOH . C 3 HOH A 6 406 120 HOH HOH . C 3 HOH A 7 407 130 HOH HOH . C 3 HOH A 8 408 193 HOH HOH . C 3 HOH A 9 409 88 HOH HOH . C 3 HOH A 10 410 191 HOH HOH . C 3 HOH A 11 411 156 HOH HOH . C 3 HOH A 12 412 118 HOH HOH . C 3 HOH A 13 413 86 HOH HOH . C 3 HOH A 14 414 10 HOH HOH . C 3 HOH A 15 415 94 HOH HOH . C 3 HOH A 16 416 5 HOH HOH . C 3 HOH A 17 417 208 HOH HOH . C 3 HOH A 18 418 177 HOH HOH . C 3 HOH A 19 419 8 HOH HOH . C 3 HOH A 20 420 117 HOH HOH . C 3 HOH A 21 421 59 HOH HOH . C 3 HOH A 22 422 101 HOH HOH . C 3 HOH A 23 423 40 HOH HOH . C 3 HOH A 24 424 140 HOH HOH . C 3 HOH A 25 425 55 HOH HOH . C 3 HOH A 26 426 14 HOH HOH . C 3 HOH A 27 427 7 HOH HOH . C 3 HOH A 28 428 133 HOH HOH . C 3 HOH A 29 429 103 HOH HOH . C 3 HOH A 30 430 151 HOH HOH . C 3 HOH A 31 431 144 HOH HOH . C 3 HOH A 32 432 67 HOH HOH . C 3 HOH A 33 433 77 HOH HOH . C 3 HOH A 34 434 26 HOH HOH . C 3 HOH A 35 435 21 HOH HOH . C 3 HOH A 36 436 73 HOH HOH . C 3 HOH A 37 437 171 HOH HOH . C 3 HOH A 38 438 157 HOH HOH . C 3 HOH A 39 439 197 HOH HOH . C 3 HOH A 40 440 218 HOH HOH . C 3 HOH A 41 441 1 HOH HOH . C 3 HOH A 42 442 115 HOH HOH . C 3 HOH A 43 443 65 HOH HOH . C 3 HOH A 44 444 43 HOH HOH . C 3 HOH A 45 445 112 HOH HOH . C 3 HOH A 46 446 54 HOH HOH . C 3 HOH A 47 447 121 HOH HOH . C 3 HOH A 48 448 107 HOH HOH . C 3 HOH A 49 449 205 HOH HOH . C 3 HOH A 50 450 90 HOH HOH . C 3 HOH A 51 451 113 HOH HOH . C 3 HOH A 52 452 52 HOH HOH . C 3 HOH A 53 453 106 HOH HOH . C 3 HOH A 54 454 24 HOH HOH . C 3 HOH A 55 455 20 HOH HOH . C 3 HOH A 56 456 41 HOH HOH . C 3 HOH A 57 457 79 HOH HOH . C 3 HOH A 58 458 49 HOH HOH . C 3 HOH A 59 459 164 HOH HOH . C 3 HOH A 60 460 15 HOH HOH . C 3 HOH A 61 461 109 HOH HOH . C 3 HOH A 62 462 50 HOH HOH . C 3 HOH A 63 463 69 HOH HOH . C 3 HOH A 64 464 36 HOH HOH . C 3 HOH A 65 465 166 HOH HOH . C 3 HOH A 66 466 135 HOH HOH . C 3 HOH A 67 467 89 HOH HOH . C 3 HOH A 68 468 46 HOH HOH . C 3 HOH A 69 469 47 HOH HOH . C 3 HOH A 70 470 58 HOH HOH . C 3 HOH A 71 471 32 HOH HOH . C 3 HOH A 72 472 195 HOH HOH . C 3 HOH A 73 473 145 HOH HOH . C 3 HOH A 74 474 82 HOH HOH . C 3 HOH A 75 475 211 HOH HOH . C 3 HOH A 76 476 28 HOH HOH . C 3 HOH A 77 477 93 HOH HOH . C 3 HOH A 78 478 11 HOH HOH . C 3 HOH A 79 479 19 HOH HOH . C 3 HOH A 80 480 63 HOH HOH . C 3 HOH A 81 481 18 HOH HOH . C 3 HOH A 82 482 57 HOH HOH . C 3 HOH A 83 483 183 HOH HOH . C 3 HOH A 84 484 168 HOH HOH . C 3 HOH A 85 485 104 HOH HOH . C 3 HOH A 86 486 62 HOH HOH . C 3 HOH A 87 487 132 HOH HOH . C 3 HOH A 88 488 61 HOH HOH . C 3 HOH A 89 489 76 HOH HOH . C 3 HOH A 90 490 95 HOH HOH . C 3 HOH A 91 491 138 HOH HOH . C 3 HOH A 92 492 189 HOH HOH . C 3 HOH A 93 493 83 HOH HOH . C 3 HOH A 94 494 33 HOH HOH . C 3 HOH A 95 495 149 HOH HOH . C 3 HOH A 96 496 13 HOH HOH . C 3 HOH A 97 497 105 HOH HOH . C 3 HOH A 98 498 75 HOH HOH . C 3 HOH A 99 499 64 HOH HOH . C 3 HOH A 100 500 116 HOH HOH . C 3 HOH A 101 501 187 HOH HOH . C 3 HOH A 102 502 163 HOH HOH . C 3 HOH A 103 503 6 HOH HOH . C 3 HOH A 104 504 152 HOH HOH . C 3 HOH A 105 505 125 HOH HOH . C 3 HOH A 106 506 25 HOH HOH . C 3 HOH A 107 507 127 HOH HOH . C 3 HOH A 108 508 81 HOH HOH . C 3 HOH A 109 509 4 HOH HOH . C 3 HOH A 110 510 16 HOH HOH . C 3 HOH A 111 511 37 HOH HOH . C 3 HOH A 112 512 97 HOH HOH . C 3 HOH A 113 513 42 HOH HOH . C 3 HOH A 114 514 84 HOH HOH . C 3 HOH A 115 515 3 HOH HOH . C 3 HOH A 116 516 137 HOH HOH . C 3 HOH A 117 517 12 HOH HOH . C 3 HOH A 118 518 204 HOH HOH . C 3 HOH A 119 519 72 HOH HOH . C 3 HOH A 120 520 110 HOH HOH . C 3 HOH A 121 521 102 HOH HOH . C 3 HOH A 122 522 154 HOH HOH . C 3 HOH A 123 523 186 HOH HOH . C 3 HOH A 124 524 68 HOH HOH . C 3 HOH A 125 525 34 HOH HOH . C 3 HOH A 126 526 71 HOH HOH . C 3 HOH A 127 527 201 HOH HOH . C 3 HOH A 128 528 126 HOH HOH . C 3 HOH A 129 529 44 HOH HOH . C 3 HOH A 130 530 184 HOH HOH . C 3 HOH A 131 531 202 HOH HOH . C 3 HOH A 132 532 30 HOH HOH . C 3 HOH A 133 533 175 HOH HOH . C 3 HOH A 134 534 87 HOH HOH . C 3 HOH A 135 535 199 HOH HOH . C 3 HOH A 136 536 159 HOH HOH . C 3 HOH A 137 537 143 HOH HOH . C 3 HOH A 138 538 165 HOH HOH . C 3 HOH A 139 539 124 HOH HOH . C 3 HOH A 140 540 2 HOH HOH . C 3 HOH A 141 541 150 HOH HOH . C 3 HOH A 142 542 210 HOH HOH . C 3 HOH A 143 543 162 HOH HOH . C 3 HOH A 144 544 192 HOH HOH . C 3 HOH A 145 545 39 HOH HOH . C 3 HOH A 146 546 70 HOH HOH . C 3 HOH A 147 547 80 HOH HOH . C 3 HOH A 148 548 111 HOH HOH . C 3 HOH A 149 549 91 HOH HOH . C 3 HOH A 150 550 108 HOH HOH . C 3 HOH A 151 551 9 HOH HOH . C 3 HOH A 152 552 148 HOH HOH . C 3 HOH A 153 553 209 HOH HOH . C 3 HOH A 154 554 74 HOH HOH . C 3 HOH A 155 555 85 HOH HOH . C 3 HOH A 156 556 96 HOH HOH . C 3 HOH A 157 557 203 HOH HOH . C 3 HOH A 158 558 206 HOH HOH . C 3 HOH A 159 559 147 HOH HOH . C 3 HOH A 160 560 22 HOH HOH . C 3 HOH A 161 561 153 HOH HOH . C 3 HOH A 162 562 27 HOH HOH . C 3 HOH A 163 563 60 HOH HOH . C 3 HOH A 164 564 35 HOH HOH . C 3 HOH A 165 565 181 HOH HOH . C 3 HOH A 166 566 114 HOH HOH . C 3 HOH A 167 567 119 HOH HOH . C 3 HOH A 168 568 180 HOH HOH . C 3 HOH A 169 569 216 HOH HOH . C 3 HOH A 170 570 48 HOH HOH . C 3 HOH A 171 571 212 HOH HOH . C 3 HOH A 172 572 169 HOH HOH . C 3 HOH A 173 573 213 HOH HOH . C 3 HOH A 174 574 182 HOH HOH . C 3 HOH A 175 575 146 HOH HOH . C 3 HOH A 176 576 66 HOH HOH . C 3 HOH A 177 577 141 HOH HOH . C 3 HOH A 178 578 188 HOH HOH . C 3 HOH A 179 579 134 HOH HOH . C 3 HOH A 180 580 174 HOH HOH . C 3 HOH A 181 581 123 HOH HOH . C 3 HOH A 182 582 196 HOH HOH . C 3 HOH A 183 583 136 HOH HOH . C 3 HOH A 184 584 215 HOH HOH . C 3 HOH A 185 585 139 HOH HOH . C 3 HOH A 186 586 200 HOH HOH . C 3 HOH A 187 587 155 HOH HOH . C 3 HOH A 188 588 142 HOH HOH . C 3 HOH A 189 589 53 HOH HOH . C 3 HOH A 190 590 31 HOH HOH . C 3 HOH A 191 591 78 HOH HOH . C 3 HOH A 192 592 172 HOH HOH . C 3 HOH A 193 593 98 HOH HOH . C 3 HOH A 194 594 17 HOH HOH . C 3 HOH A 195 595 198 HOH HOH . C 3 HOH A 196 596 131 HOH HOH . C 3 HOH A 197 597 128 HOH HOH . C 3 HOH A 198 598 178 HOH HOH . C 3 HOH A 199 599 161 HOH HOH . C 3 HOH A 200 600 190 HOH HOH . C 3 HOH A 201 601 51 HOH HOH . C 3 HOH A 202 602 129 HOH HOH . C 3 HOH A 203 603 170 HOH HOH . C 3 HOH A 204 604 23 HOH HOH . C 3 HOH A 205 605 176 HOH HOH . C 3 HOH A 206 606 92 HOH HOH . C 3 HOH A 207 607 100 HOH HOH . C 3 HOH A 208 608 214 HOH HOH . C 3 HOH A 209 609 207 HOH HOH . C 3 HOH A 210 610 38 HOH HOH . C 3 HOH A 211 611 122 HOH HOH . C 3 HOH A 212 612 179 HOH HOH . C 3 HOH A 213 613 173 HOH HOH . C 3 HOH A 214 614 45 HOH HOH . C 3 HOH A 215 615 194 HOH HOH . C 3 HOH A 216 616 185 HOH HOH . C 3 HOH A 217 617 217 HOH HOH . C 3 HOH A 218 618 160 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 HCC . . . B 2 -26.151 38.59 3.543 1 47.65 ? C1 HCC 301 A 1 HETATM 2 C C2 HCC . . . B 2 -24.823 38.779 3.189 1 49.95 ? C2 HCC 301 A 1 HETATM 3 C C3 HCC . . . B 2 -24.288 40.054 3.032 1 45.36 ? C3 HCC 301 A 1 HETATM 4 C C4 HCC . . . B 2 -25.074 41.156 3.249 1 44.6 ? C4 HCC 301 A 1 HETATM 5 C C5 HCC . . . B 2 -26.515 40.943 3.634 1 43.46 ? C5 HCC 301 A 1 HETATM 6 C C6 HCC . . . B 2 -27.011 39.652 3.774 1 47.53 ? C6 HCC 301 A 1 HETATM 7 C C7 HCC . . . B 2 -24.56 42.575 3.035 1 51.31 ? C7 HCC 301 A 1 HETATM 8 C C8 HCC . . . B 2 -23.302 42.78 2.245 1 51.02 ? C8 HCC 301 A 1 HETATM 9 C C9 HCC . . . B 2 -22.95 43.98 1.793 1 55.63 ? C9 HCC 301 A 1 HETATM 10 O O10 HCC . . . B 2 -27.363 41.996 3.811 1 50.84 ? O10 HCC 301 A 1 HETATM 11 C C11 HCC . . . B 2 -21.696 44.202 1.039 1 49.89 ? C11 HCC 301 A 1 HETATM 12 C C12 HCC . . . B 2 -21.053 43.201 0.323 1 53.31 ? C12 HCC 301 A 1 HETATM 13 C C13 HCC . . . B 2 -19.843 43.484 -0.291 1 53.87 ? C13 HCC 301 A 1 HETATM 14 C C14 HCC . . . B 2 -19.254 44.765 -0.162 1 51.67 ? C14 HCC 301 A 1 HETATM 15 C C15 HCC . . . B 2 -19.865 45.743 0.598 1 49.59 ? C15 HCC 301 A 1 HETATM 16 C C16 HCC . . . B 2 -21.087 45.457 1.204 1 54.32 ? C16 HCC 301 A 1 HETATM 17 O O17 HCC . . . B 2 -25.298 43.536 3.334 1 48.05 ? O17 HCC 301 A 1 HETATM 18 O O18 HCC . . . B 2 -18.071 44.988 -0.759 1 44.36 ? O18 HCC 301 A 1 HETATM 19 O O19 HCC . . . B 2 -26.627 37.327 3.61 1 53.36 ? O19 HCC 301 A 1 # _model_server_stats.io_time_ms 51 _model_server_stats.parse_time_ms 33 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 439 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 19 #