data_5YXB # _model_server_result.job_id OdT6GeSZqcBvlhFY0v1Hag _model_server_result.datetime_utc '2024-10-18 04:27:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5yxb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":501}' # _entry.id 5YXB # _exptl.entry_id 5YXB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 490.505 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '2-methoxyethyl (2E)-3-phenylprop-2-en-1-yl 2,6-dimethyl-4-(3-nitrophenyl)pyridine-3,5-dicarboxylate' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5YXB _cell.length_a 86.399 _cell.length_b 86.399 _cell.length_c 75.106 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5YXB _symmetry.cell_setting ? _symmetry.Int_Tables_number 93 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 42 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C27 H26 N2 O7' _chem_comp.formula_weight 490.505 _chem_comp.id 93O _chem_comp.mon_nstd_flag . _chem_comp.name '2-methoxyethyl (2E)-3-phenylprop-2-en-1-yl 2,6-dimethyl-4-(3-nitrophenyl)pyridine-3,5-dicarboxylate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C20 C21 93O doub 1 n y C20 C19 93O sing 2 n y C21 C22 93O sing 3 n y C26 O6 93O sing 4 n n C15 C16 93O doub 5 n y C15 C14 93O sing 6 n y C16 C11 93O sing 7 n y O2 N1 93O doub 8 n n O3 N1 93O sing 9 n n C14 C13 93O doub 10 n y N1 C19 93O sing 11 n n C19 C18 93O doub 12 n y C11 C12 93O doub 13 n y C11 C10 93O sing 14 n n C13 C12 93O sing 15 n y C22 C17 93O doub 16 n y O6 C25 93O sing 17 n n C10 C9 93O doub 18 e n C24 C25 93O sing 19 n n C24 O5 93O sing 20 n n C18 C17 93O sing 21 n y O4 C23 93O doub 22 n n C17 C3 93O sing 23 n n O5 C23 93O sing 24 n n C9 C8 93O sing 25 n n C23 C2 93O sing 26 n n C8 O1 93O sing 27 n n C3 C2 93O doub 28 n y C3 C4 93O sing 29 n y C2 C1 93O sing 30 n y O1 C7 93O sing 31 n n C7 C4 93O sing 32 n n C7 O 93O doub 33 n n C4 C5 93O doub 34 n y C C1 93O sing 35 n n C1 N 93O doub 36 n y C5 N 93O sing 37 n y C5 C6 93O sing 38 n n C6 H1 93O sing 39 n n C6 H2 93O sing 40 n n C6 H3 93O sing 41 n n C8 H4 93O sing 42 n n C8 H5 93O sing 43 n n C9 H6 93O sing 44 n n C14 H7 93O sing 45 n n C15 H8 93O sing 46 n n C16 H9 93O sing 47 n n C18 H10 93O sing 48 n n C20 H11 93O sing 49 n n C24 H12 93O sing 50 n n C24 H13 93O sing 51 n n C25 H14 93O sing 52 n n C25 H15 93O sing 53 n n C26 H16 93O sing 54 n n C26 H17 93O sing 55 n n C26 H18 93O sing 56 n n C22 H19 93O sing 57 n n C21 H20 93O sing 58 n n C H21 93O sing 59 n n C H22 93O sing 60 n n C H23 93O sing 61 n n C10 H24 93O sing 62 n n C13 H25 93O sing 63 n n C12 H26 93O sing 64 n n # _atom_sites.entry_id 5YXB _atom_sites.fract_transf_matrix[1][1] 0.011574 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011574 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013315 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 93O A 1 501 1 93O CIL . D 4 HOH A 1 601 1 HOH HOH . D 4 HOH A 2 602 57 HOH HOH . D 4 HOH A 3 603 6 HOH HOH . D 4 HOH A 4 604 38 HOH HOH . D 4 HOH A 5 605 28 HOH HOH . D 4 HOH A 6 606 29 HOH HOH . D 4 HOH A 7 607 61 HOH HOH . D 4 HOH A 8 608 17 HOH HOH . D 4 HOH A 9 609 24 HOH HOH . D 4 HOH A 10 610 69 HOH HOH . D 4 HOH A 11 611 5 HOH HOH . D 4 HOH A 12 612 46 HOH HOH . D 4 HOH A 13 613 12 HOH HOH . D 4 HOH A 14 614 7 HOH HOH . D 4 HOH A 15 615 67 HOH HOH . D 4 HOH A 16 616 4 HOH HOH . D 4 HOH A 17 617 8 HOH HOH . D 4 HOH A 18 618 1 HOH HOH . D 4 HOH A 19 619 71 HOH HOH . D 4 HOH A 20 620 42 HOH HOH . D 4 HOH A 21 621 21 HOH HOH . D 4 HOH A 22 622 58 HOH HOH . D 4 HOH A 23 623 2 HOH HOH . D 4 HOH A 24 624 40 HOH HOH . D 4 HOH A 25 625 4 HOH HOH . D 4 HOH A 26 626 7 HOH HOH . D 4 HOH A 27 627 15 HOH HOH . D 4 HOH A 28 628 25 HOH HOH . D 4 HOH A 29 629 26 HOH HOH . D 4 HOH A 30 630 5 HOH HOH . D 4 HOH A 31 631 8 HOH HOH . D 4 HOH A 32 632 48 HOH HOH . D 4 HOH A 33 633 27 HOH HOH . D 4 HOH A 34 634 9 HOH HOH . D 4 HOH A 35 635 10 HOH HOH . D 4 HOH A 36 636 16 HOH HOH . D 4 HOH A 37 637 18 HOH HOH . D 4 HOH A 38 638 10 HOH HOH . D 4 HOH A 39 639 20 HOH HOH . D 4 HOH A 40 640 74 HOH HOH . D 4 HOH A 41 641 6 HOH HOH . D 4 HOH A 42 642 46 HOH HOH . D 4 HOH A 43 643 9 HOH HOH . D 4 HOH A 44 644 11 HOH HOH . D 4 HOH A 45 645 24 HOH HOH . D 4 HOH A 46 646 44 HOH HOH . D 4 HOH A 47 647 3 HOH HOH . D 4 HOH A 48 648 47 HOH HOH . D 4 HOH A 49 649 56 HOH HOH . D 4 HOH A 50 650 19 HOH HOH . D 4 HOH A 51 651 11 HOH HOH . E 4 HOH B 1 801 34 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 93O . . . C 3 -36.615 20.073 -20.581 1 57.16 ? C1 93O 501 A 1 HETATM 2 C C2 93O . . . C 3 -36.354 19.195 -21.767 1 52.17 ? C2 93O 501 A 1 HETATM 3 C C3 93O . . . C 3 -36.967 17.946 -22.113 1 46.86 ? C3 93O 501 A 1 HETATM 4 C C4 93O . . . C 3 -37.929 17.748 -21.017 1 54.41 ? C4 93O 501 A 1 HETATM 5 C C5 93O . . . C 3 -38.128 18.669 -19.809 1 53.79 ? C5 93O 501 A 1 HETATM 6 C C6 93O . . . C 3 -39.146 18.262 -18.802 1 52.22 ? C6 93O 501 A 1 HETATM 7 C C8 93O . . . C 3 -36.614 15.097 -22.393 1 60.07 ? C8 93O 501 A 1 HETATM 8 C C9 93O . . . C 3 -36.92 13.755 -23.056 1 65.18 ? C9 93O 501 A 1 HETATM 9 C C11 93O . . . C 3 -37.597 12.327 -24.937 1 60.4 ? C11 93O 501 A 1 HETATM 10 C C14 93O . . . C 3 -38.327 9.634 -25.319 1 57.59 ? C14 93O 501 A 1 HETATM 11 C C15 93O . . . C 3 -37.01 10.058 -25.553 1 60.45 ? C15 93O 501 A 1 HETATM 12 C C16 93O . . . C 3 -36.656 11.389 -25.358 1 60.46 ? C16 93O 501 A 1 HETATM 13 C C17 93O . . . C 3 -37.452 17.752 -23.574 1 39.33 ? C17 93O 501 A 1 HETATM 14 C C18 93O . . . C 3 -38.468 16.861 -23.902 1 36.86 ? C18 93O 501 A 1 HETATM 15 C C19 93O . . . C 3 -38.908 16.614 -25.15 1 35.29 ? C19 93O 501 A 1 HETATM 16 C C20 93O . . . C 3 -38.409 17.236 -26.251 1 34.18 ? C20 93O 501 A 1 HETATM 17 O O4 93O . . . C 3 -35.757 20.392 -23.584 1 52.57 ? O4 93O 501 A 1 HETATM 18 C C23 93O . . . C 3 -35.402 19.595 -22.813 1 50.04 ? C23 93O 501 A 1 HETATM 19 O O5 93O . . . C 3 -34.161 19.076 -23.166 1 55.9 ? O5 93O 501 A 1 HETATM 20 C C24 93O . . . C 3 -33.561 19.46 -24.397 1 55.89 ? C24 93O 501 A 1 HETATM 21 C C25 93O . . . C 3 -33.014 20.809 -24.06 1 55.76 ? C25 93O 501 A 1 HETATM 22 O O6 93O . . . C 3 -31.714 20.876 -24.55 1 56.44 ? O6 93O 501 A 1 HETATM 23 C C26 93O . . . C 3 -31.71 20.687 -25.935 1 57.52 ? C26 93O 501 A 1 HETATM 24 C C22 93O . . . C 3 -36.943 18.338 -24.726 1 35.33 ? C22 93O 501 A 1 HETATM 25 C C21 93O . . . C 3 -37.394 18.126 -26.011 1 35.41 ? C21 93O 501 A 1 HETATM 26 N N1 93O . . . C 3 -39.916 15.698 -25.258 1 37.92 ? N1 93O 501 A 1 HETATM 27 O O3 93O . . . C 3 -41.211 16.182 -25.333 1 41.75 ? O3 93O 501 A 1 HETATM 28 O O2 93O . . . C 3 -39.669 14.317 -25.341 1 37.05 ? O2 93O 501 A 1 HETATM 29 N N 93O . . . C 3 -37.491 19.83 -19.603 1 54.65 ? N 93O 501 A 1 HETATM 30 C C 93O . . . C 3 -35.796 21.281 -20.598 1 67.49 ? C 93O 501 A 1 HETATM 31 C C7 93O . . . C 3 -38.636 16.413 -21.152 1 66.93 ? C7 93O 501 A 1 HETATM 32 O O 93O . . . C 3 -39.799 16.177 -20.836 1 74.23 ? O 93O 501 A 1 HETATM 33 O O1 93O . . . C 3 -37.9 15.271 -21.736 1 64.76 ? O1 93O 501 A 1 HETATM 34 C C10 93O . . . C 3 -37.204 13.66 -24.411 1 64.58 ? C10 93O 501 A 1 HETATM 35 C C13 93O . . . C 3 -39.271 10.554 -24.877 1 55.47 ? C13 93O 501 A 1 HETATM 36 C C12 93O . . . C 3 -38.905 11.874 -24.658 1 56.98 ? C12 93O 501 A 1 # _model_server_stats.io_time_ms 68 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 266 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 36 #