data_5YXD # _model_server_result.job_id P0TtP5w_0jY5WBPUnyzu7g _model_server_result.datetime_utc '2024-11-27 08:14:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5yxd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":501}' # _entry.id 5YXD # _exptl.entry_id 5YXD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 382.238 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ethyl methyl 4-(2,3-dichlorophenyl)-2,6-dimethylpyridine-3,5-dicarboxylate' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5YXD _cell.length_a 34.755 _cell.length_b 160.725 _cell.length_c 118.349 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5YXD _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C18 H17 Cl2 N O4' _chem_comp.formula_weight 382.238 _chem_comp.id 93R _chem_comp.mon_nstd_flag . _chem_comp.name 'ethyl methyl 4-(2,3-dichlorophenyl)-2,6-dimethylpyridine-3,5-dicarboxylate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CL C10 93R sing 1 n n C11 C10 93R doub 2 n y C11 C12 93R sing 3 n y C10 C9 93R sing 4 n y C12 C13 93R doub 5 n y C15 O3 93R sing 6 n n O3 C14 93R sing 7 n n O2 C14 93R doub 8 n n C9 CL1 93R sing 9 n n C9 C8 93R doub 10 n y C13 C8 93R sing 11 n y C14 C6 93R sing 12 n n C8 C7 93R sing 13 n n C6 C7 93R doub 14 n y C6 C5 93R sing 15 n y C C1 93R sing 16 n n C7 C3 93R sing 17 n y C16 C5 93R sing 18 n n C5 N 93R doub 19 n y C3 C2 93R sing 20 n n C3 C4 93R doub 21 n y C1 O 93R sing 22 n n N C4 93R sing 23 n y C2 O1 93R doub 24 n n C2 O 93R sing 25 n n C4 C17 93R sing 26 n n C15 H1 93R sing 27 n n C15 H2 93R sing 28 n n C15 H3 93R sing 29 n n C16 H4 93R sing 30 n n C16 H5 93R sing 31 n n C16 H6 93R sing 32 n n C17 H7 93R sing 33 n n C17 H8 93R sing 34 n n C17 H9 93R sing 35 n n C1 H10 93R sing 36 n n C1 H11 93R sing 37 n n C H12 93R sing 38 n n C H13 93R sing 39 n n C H14 93R sing 40 n n C13 H15 93R sing 41 n n C12 H16 93R sing 42 n n C11 H17 93R sing 43 n n # _atom_sites.entry_id 5YXD _atom_sites.fract_transf_matrix[1][1] 0.028773 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006222 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00845 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id C _pdbx_nonpoly_scheme.entity_id 3 _pdbx_nonpoly_scheme.mon_id 93R _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 501 _pdbx_nonpoly_scheme.auth_seq_num 1 _pdbx_nonpoly_scheme.pdb_mon_id 93R _pdbx_nonpoly_scheme.auth_mon_id FEL _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 93R . . . C 3 7.385 14.813 -12.714 1 36.44 ? O1 93R 501 A 1 HETATM 2 O O2 93R . . . C 3 4.384 12.145 -16.373 1 39.65 ? O2 93R 501 A 1 HETATM 3 O O3 93R . . . C 3 2.138 12.763 -16.597 1 42.65 ? O3 93R 501 A 1 HETATM 4 C C14 93R . . . C 3 3.434 12.843 -15.929 1 41.06 ? C14 93R 501 A 1 HETATM 5 C C15 93R . . . C 3 1.495 11.504 -16.845 1 41.51 ? C15 93R 501 A 1 HETATM 6 C C6 93R . . . C 3 3.577 13.779 -14.742 1 39.03 ? C6 93R 501 A 1 HETATM 7 C C5 93R . . . C 3 2.432 14.269 -13.909 1 37.72 ? C5 93R 501 A 1 HETATM 8 C C16 93R . . . C 3 0.975 13.924 -14.122 1 37.88 ? C16 93R 501 A 1 HETATM 9 N N 93R . . . C 3 2.643 15.09 -12.874 1 37.41 ? N 93R 501 A 1 HETATM 10 C C4 93R . . . C 3 3.835 15.546 -12.493 1 39.75 ? C4 93R 501 A 1 HETATM 11 C C17 93R . . . C 3 3.927 16.466 -11.292 1 39.98 ? C17 93R 501 A 1 HETATM 12 C C7 93R . . . C 3 4.96 14.211 -14.39 1 42.8 ? C7 93R 501 A 1 HETATM 13 C C3 93R . . . C 3 5.07 15.138 -13.234 1 41.86 ? C3 93R 501 A 1 HETATM 14 C C2 93R . . . C 3 6.47 15.588 -12.832 1 41.24 ? C2 93R 501 A 1 HETATM 15 O O 93R . . . C 3 6.847 16.952 -12.589 1 48.84 ? O 93R 501 A 1 HETATM 16 C C1 93R . . . C 3 8.069 17.404 -13.188 1 55.23 ? C1 93R 501 A 1 HETATM 17 C C 93R . . . C 3 7.991 17.38 -14.712 1 57.44 ? C 93R 501 A 1 HETATM 18 C C8 93R . . . C 3 5.572 14.834 -15.578 1 46.79 ? C8 93R 501 A 1 HETATM 19 C C13 93R . . . C 3 6.732 14.269 -16.124 1 46.15 ? C13 93R 501 A 1 HETATM 20 C C12 93R . . . C 3 7.302 14.859 -17.248 1 48.67 ? C12 93R 501 A 1 HETATM 21 C C11 93R . . . C 3 6.735 15.996 -17.872 1 53.54 ? C11 93R 501 A 1 HETATM 22 C C10 93R . . . C 3 5.557 16.622 -17.399 1 55.51 ? C10 93R 501 A 1 HETATM 23 CL CL 93R . . . C 3 4.686 18.087 -18.081 1 59.9 ? CL 93R 501 A 1 HETATM 24 C C9 93R . . . C 3 4.937 16.041 -16.204 1 52.57 ? C9 93R 501 A 1 HETATM 25 CL CL1 93R . . . C 3 3.46 16.932 -15.647 1 59.92 ? CL1 93R 501 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 265 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 25 #