data_5YXJ # _model_server_result.job_id UnyYLRo2gDIiGWYduruYvQ _model_server_result.datetime_utc '2024-11-22 20:16:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5yxj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":501}' # _entry.id 5YXJ # _exptl.entry_id 5YXJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 477.509 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '2-[benzyl(methyl)amino]ethyl methyl 2,6-dimethyl-4-(3-nitrophenyl)pyridine-3,5-dicarboxylate' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 103.38 _cell.angle_gamma 90 _cell.entry_id 5YXJ _cell.length_a 163.351 _cell.length_b 34.976 _cell.length_c 118.926 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5YXJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,E,G,J 1 1 B,C,F,H,I 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N # _chem_comp.formula 'C26 H27 N3 O6' _chem_comp.formula_weight 477.509 _chem_comp.id 93U _chem_comp.mon_nstd_flag . _chem_comp.name '2-[benzyl(methyl)amino]ethyl methyl 2,6-dimethyl-4-(3-nitrophenyl)pyridine-3,5-dicarboxylate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C6 C5 93U sing 1 n n O C7 93U doub 2 n n C5 N 93U doub 3 n y C5 C4 93U sing 4 n y N C1 93U sing 5 n y C7 C4 93U sing 6 n n C7 O1 93U sing 7 n n C4 C3 93U doub 8 n y C8 O1 93U sing 9 n n C8 C9 93U sing 10 n n C1 C 93U sing 11 n n C1 C2 93U doub 12 n y C3 C2 93U sing 13 n y C3 C18 93U sing 14 n n C14 C13 93U doub 15 n y C14 C15 93U sing 16 n y N1 C9 93U sing 17 n n N1 C10 93U sing 18 n n N1 C11 93U sing 19 n n C2 C24 93U sing 20 n n C13 C12 93U sing 21 n y C23 C18 93U doub 22 n y C23 C22 93U sing 23 n y C15 C16 93U doub 24 n y C18 C19 93U sing 25 n y C12 C11 93U sing 26 n n C12 C17 93U doub 27 n y C22 C21 93U doub 28 n y C24 O4 93U doub 29 n n C24 O5 93U sing 30 n n C16 C17 93U sing 31 n y C19 C20 93U doub 32 n y O5 C25 93U sing 33 n n C21 C20 93U sing 34 n y C20 N2 93U sing 35 n n N2 O2 93U doub 36 n n N2 O3 93U sing 37 n n C25 H1 93U sing 38 n n C25 H2 93U sing 39 n n C25 H3 93U sing 40 n n C23 H4 93U sing 41 n n C22 H5 93U sing 42 n n C21 H6 93U sing 43 n n C19 H7 93U sing 44 n n C6 H8 93U sing 45 n n C6 H9 93U sing 46 n n C6 H10 93U sing 47 n n C H11 93U sing 48 n n C H12 93U sing 49 n n C H13 93U sing 50 n n C8 H14 93U sing 51 n n C8 H15 93U sing 52 n n C9 H16 93U sing 53 n n C9 H17 93U sing 54 n n C10 H19 93U sing 55 n n C10 H20 93U sing 56 n n C10 H21 93U sing 57 n n C11 H22 93U sing 58 n n C11 H23 93U sing 59 n n C17 H24 93U sing 60 n n C16 H25 93U sing 61 n n C15 H26 93U sing 62 n n C14 H27 93U sing 63 n n C13 H28 93U sing 64 n n # _atom_sites.entry_id 5YXJ _atom_sites.fract_transf_matrix[1][1] 0.006122 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001457 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.028591 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008643 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 93U A 1 501 1 93U NIC . F 3 93U B 1 501 2 93U NIC . G 4 HOH A 1 601 116 HOH HOH . G 4 HOH A 2 602 47 HOH HOH . G 4 HOH A 3 603 4 HOH HOH . G 4 HOH A 4 604 2 HOH HOH . G 4 HOH A 5 605 125 HOH HOH . G 4 HOH A 6 606 17 HOH HOH . G 4 HOH A 7 607 179 HOH HOH . G 4 HOH A 8 608 27 HOH HOH . G 4 HOH A 9 609 189 HOH HOH . G 4 HOH A 10 610 111 HOH HOH . G 4 HOH A 11 611 85 HOH HOH . G 4 HOH A 12 612 72 HOH HOH . G 4 HOH A 13 613 133 HOH HOH . G 4 HOH A 14 614 11 HOH HOH . G 4 HOH A 15 615 13 HOH HOH . G 4 HOH A 16 616 12 HOH HOH . G 4 HOH A 17 617 141 HOH HOH . G 4 HOH A 18 618 127 HOH HOH . G 4 HOH A 19 619 51 HOH HOH . G 4 HOH A 20 620 7 HOH HOH . G 4 HOH A 21 621 45 HOH HOH . G 4 HOH A 22 622 22 HOH HOH . G 4 HOH A 23 623 60 HOH HOH . G 4 HOH A 24 624 82 HOH HOH . G 4 HOH A 25 625 9 HOH HOH . G 4 HOH A 26 626 171 HOH HOH . G 4 HOH A 27 627 23 HOH HOH . G 4 HOH A 28 628 144 HOH HOH . G 4 HOH A 29 629 129 HOH HOH . G 4 HOH A 30 630 54 HOH HOH . G 4 HOH A 31 631 59 HOH HOH . G 4 HOH A 32 632 84 HOH HOH . G 4 HOH A 33 633 146 HOH HOH . G 4 HOH A 34 634 128 HOH HOH . G 4 HOH A 35 635 61 HOH HOH . G 4 HOH A 36 636 11 HOH HOH . G 4 HOH A 37 637 148 HOH HOH . G 4 HOH A 38 638 44 HOH HOH . G 4 HOH A 39 639 21 HOH HOH . G 4 HOH A 40 640 115 HOH HOH . G 4 HOH A 41 641 46 HOH HOH . G 4 HOH A 42 642 154 HOH HOH . G 4 HOH A 43 643 88 HOH HOH . G 4 HOH A 44 644 16 HOH HOH . G 4 HOH A 45 645 16 HOH HOH . G 4 HOH A 46 646 122 HOH HOH . G 4 HOH A 47 647 180 HOH HOH . G 4 HOH A 48 648 165 HOH HOH . G 4 HOH A 49 649 64 HOH HOH . G 4 HOH A 50 650 117 HOH HOH . G 4 HOH A 51 651 31 HOH HOH . G 4 HOH A 52 652 110 HOH HOH . G 4 HOH A 53 653 136 HOH HOH . G 4 HOH A 54 654 37 HOH HOH . G 4 HOH A 55 655 12 HOH HOH . G 4 HOH A 56 656 106 HOH HOH . G 4 HOH A 57 657 64 HOH HOH . G 4 HOH A 58 658 106 HOH HOH . G 4 HOH A 59 659 164 HOH HOH . G 4 HOH A 60 660 105 HOH HOH . G 4 HOH A 61 661 167 HOH HOH . G 4 HOH A 62 662 2 HOH HOH . G 4 HOH A 63 663 73 HOH HOH . G 4 HOH A 64 664 139 HOH HOH . G 4 HOH A 65 665 152 HOH HOH . G 4 HOH A 66 666 162 HOH HOH . G 4 HOH A 67 667 140 HOH HOH . G 4 HOH A 68 668 6 HOH HOH . G 4 HOH A 69 669 113 HOH HOH . G 4 HOH A 70 670 161 HOH HOH . G 4 HOH A 71 671 79 HOH HOH . G 4 HOH A 72 672 156 HOH HOH . G 4 HOH A 73 673 96 HOH HOH . G 4 HOH A 74 674 142 HOH HOH . G 4 HOH A 75 675 69 HOH HOH . G 4 HOH A 76 676 147 HOH HOH . G 4 HOH A 77 677 62 HOH HOH . G 4 HOH A 78 678 161 HOH HOH . G 4 HOH A 79 679 134 HOH HOH . G 4 HOH A 80 680 74 HOH HOH . H 4 HOH B 1 601 97 HOH HOH . H 4 HOH B 2 602 14 HOH HOH . H 4 HOH B 3 603 185 HOH HOH . H 4 HOH B 4 604 62 HOH HOH . H 4 HOH B 5 605 89 HOH HOH . H 4 HOH B 6 606 63 HOH HOH . H 4 HOH B 7 607 66 HOH HOH . H 4 HOH B 8 608 174 HOH HOH . H 4 HOH B 9 609 163 HOH HOH . H 4 HOH B 10 610 75 HOH HOH . H 4 HOH B 11 611 57 HOH HOH . H 4 HOH B 12 612 58 HOH HOH . H 4 HOH B 13 613 102 HOH HOH . H 4 HOH B 14 614 42 HOH HOH . H 4 HOH B 15 615 55 HOH HOH . H 4 HOH B 16 616 166 HOH HOH . H 4 HOH B 17 617 169 HOH HOH . H 4 HOH B 18 618 176 HOH HOH . H 4 HOH B 19 619 48 HOH HOH . H 4 HOH B 20 620 116 HOH HOH . H 4 HOH B 21 621 43 HOH HOH . H 4 HOH B 22 622 50 HOH HOH . H 4 HOH B 23 623 103 HOH HOH . H 4 HOH B 24 624 155 HOH HOH . H 4 HOH B 25 625 76 HOH HOH . H 4 HOH B 26 626 190 HOH HOH . H 4 HOH B 27 627 157 HOH HOH . H 4 HOH B 28 628 71 HOH HOH . H 4 HOH B 29 629 160 HOH HOH . H 4 HOH B 30 630 35 HOH HOH . H 4 HOH B 31 631 187 HOH HOH . I 4 HOH C 1 801 91 HOH HOH . J 4 HOH D 1 801 7 HOH HOH . J 4 HOH D 2 802 52 HOH HOH . J 4 HOH D 3 803 22 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 93U . . . E 3 -15.282 1.827 12.297 1 46.18 ? C1 93U 501 A 1 HETATM 2 O O1 93U . . . E 3 -18.045 -2.736 12.206 1 41.94 ? O1 93U 501 A 1 HETATM 3 O O2 93U . . . E 3 -20.216 -1.789 17.35 1 92.82 ? O2 93U 501 A 1 HETATM 4 C C2 93U . . . E 3 -15.267 0.738 13.318 1 48.13 ? C2 93U 501 A 1 HETATM 5 C C3 93U . . . E 3 -16.056 -0.492 13.079 1 42.91 ? C3 93U 501 A 1 HETATM 6 C C4 93U . . . E 3 -16.646 -0.621 11.704 1 41.97 ? C4 93U 501 A 1 HETATM 7 C C5 93U . . . E 3 -16.572 0.519 10.75 1 42.71 ? C5 93U 501 A 1 HETATM 8 O O3 93U . . . E 3 -17.993 -2.536 17.391 1 69.88 ? O3 93U 501 A 1 HETATM 9 O O4 93U . . . E 3 -14.022 1.9 15.036 1 64.4 ? O4 93U 501 A 1 HETATM 10 O O5 93U . . . E 3 -14.539 -0.305 15.428 1 62.97 ? O5 93U 501 A 1 HETATM 11 C C24 93U . . . E 3 -14.586 0.887 14.63 1 55.43 ? C24 93U 501 A 1 HETATM 12 C C25 93U . . . E 3 -13.291 -0.852 15.821 1 64.21 ? C25 93U 501 A 1 HETATM 13 C C18 93U . . . E 3 -17.28 -0.233 13.916 1 41.76 ? C18 93U 501 A 1 HETATM 14 C C23 93U . . . E 3 -18.187 0.824 13.676 1 45.28 ? C23 93U 501 A 1 HETATM 15 C C22 93U . . . E 3 -19.342 1.067 14.452 1 45.11 ? C22 93U 501 A 1 HETATM 16 C C21 93U . . . E 3 -19.61 0.221 15.5 1 43.51 ? C21 93U 501 A 1 HETATM 17 C C20 93U . . . E 3 -18.71 -0.825 15.754 1 47.7 ? C20 93U 501 A 1 HETATM 18 N N2 93U . . . E 3 -18.943 -1.701 16.817 1 60.86 ? N2 93U 501 A 1 HETATM 19 C C19 93U . . . E 3 -17.581 -1.039 14.976 1 44.23 ? C19 93U 501 A 1 HETATM 20 C C6 93U . . . E 3 -17.195 0.498 9.369 1 43 ? C6 93U 501 A 1 HETATM 21 N N 93U . . . E 3 -15.913 1.636 11.12 1 44.29 ? N 93U 501 A 1 HETATM 22 C C 93U . . . E 3 -14.58 3.138 12.5 1 46.5 ? C 93U 501 A 1 HETATM 23 C C7 93U . . . E 3 -17.357 -1.865 11.299 1 38.99 ? C7 93U 501 A 1 HETATM 24 O O 93U . . . E 3 -17.285 -2.22 10.17 1 34.61 ? O 93U 501 A 1 HETATM 25 C C8 93U . . . E 3 -18.136 -4.12 11.936 1 38.94 ? C8 93U 501 A 1 HETATM 26 C C9 93U . . . E 3 -17.88 -4.805 13.266 1 36.31 ? C9 93U 501 A 1 HETATM 27 N N1 93U . . . E 3 -16.593 -5.516 13.245 1 34.76 ? N1 93U 501 A 1 HETATM 28 C C10 93U . . . E 3 -15.512 -4.495 13.301 1 35.7 ? C10 93U 501 A 1 HETATM 29 C C11 93U . . . E 3 -16.49 -6.491 14.373 1 33.55 ? C11 93U 501 A 1 HETATM 30 C C12 93U . . . E 3 -17.403 -7.687 14.196 1 30.96 ? C12 93U 501 A 1 HETATM 31 C C17 93U . . . E 3 -18.601 -7.704 14.866 1 30.51 ? C17 93U 501 A 1 HETATM 32 C C16 93U . . . E 3 -19.476 -8.741 14.713 1 31.12 ? C16 93U 501 A 1 HETATM 33 C C15 93U . . . E 3 -19.164 -9.812 13.872 1 35.27 ? C15 93U 501 A 1 HETATM 34 C C14 93U . . . E 3 -17.948 -9.807 13.179 1 34.68 ? C14 93U 501 A 1 HETATM 35 C C13 93U . . . E 3 -17.066 -8.74 13.35 1 32.37 ? C13 93U 501 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 303 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 35 #