data_5YXM
#
_model_server_result.job_id            hYFRSnTKYyM1_vXsPNg3bA 
_model_server_result.datetime_utc      '2024-10-10 23:37:15' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5yxm 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":203}' 
#
_entry.id    5YXM 
#
_exptl.entry_id    5YXM 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              94.971 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PHOSPHATE ION' 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5YXM 
_cell.length_a            53.536 
_cell.length_b            69.23 
_cell.length_c            74.775 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5YXM 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 B N N 
? 2 C N N 
? 2 D N N 
#
_chem_comp.formula           'O4 P -3' 
_chem_comp.formula_weight    94.971 
_chem_comp.id                PO4 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PHOSPHATE ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
P O1 PO4 doub 260 n n 
P O2 PO4 sing 261 n n 
P O3 PO4 sing 262 n n 
P O4 PO4 sing 263 n n 
#
_atom_sites.entry_id                     5YXM 
_atom_sites.fract_transf_matrix[1][1]    0.018679 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014445 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.013373 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 PO4 A 1 201 1 PO4 PO4 . 
C 2 PO4 A 1 202 2 PO4 PO4 . 
D 2 PO4 A 1 203 3 PO4 PO4 . 
E 3 HOH A 1 301 16 HOH HOH . 
E 3 HOH A 2 302 73 HOH HOH . 
E 3 HOH A 3 303 224 HOH HOH . 
E 3 HOH A 4 304 35 HOH HOH . 
E 3 HOH A 5 305 232 HOH HOH . 
E 3 HOH A 6 306 213 HOH HOH . 
E 3 HOH A 7 307 68 HOH HOH . 
E 3 HOH A 8 308 233 HOH HOH . 
E 3 HOH A 9 309 115 HOH HOH . 
E 3 HOH A 10 310 10 HOH HOH . 
E 3 HOH A 11 311 57 HOH HOH . 
E 3 HOH A 12 312 7 HOH HOH . 
E 3 HOH A 13 313 121 HOH HOH . 
E 3 HOH A 14 314 156 HOH HOH . 
E 3 HOH A 15 315 33 HOH HOH . 
E 3 HOH A 16 316 225 HOH HOH . 
E 3 HOH A 17 317 114 HOH HOH . 
E 3 HOH A 18 318 179 HOH HOH . 
E 3 HOH A 19 319 95 HOH HOH . 
E 3 HOH A 20 320 14 HOH HOH . 
E 3 HOH A 21 321 149 HOH HOH . 
E 3 HOH A 22 322 19 HOH HOH . 
E 3 HOH A 23 323 221 HOH HOH . 
E 3 HOH A 24 324 146 HOH HOH . 
E 3 HOH A 25 325 15 HOH HOH . 
E 3 HOH A 26 326 125 HOH HOH . 
E 3 HOH A 27 327 59 HOH HOH . 
E 3 HOH A 28 328 88 HOH HOH . 
E 3 HOH A 29 329 47 HOH HOH . 
E 3 HOH A 30 330 20 HOH HOH . 
E 3 HOH A 31 331 102 HOH HOH . 
E 3 HOH A 32 332 22 HOH HOH . 
E 3 HOH A 33 333 1 HOH HOH . 
E 3 HOH A 34 334 50 HOH HOH . 
E 3 HOH A 35 335 183 HOH HOH . 
E 3 HOH A 36 336 31 HOH HOH . 
E 3 HOH A 37 337 148 HOH HOH . 
E 3 HOH A 38 338 29 HOH HOH . 
E 3 HOH A 39 339 71 HOH HOH . 
E 3 HOH A 40 340 34 HOH HOH . 
E 3 HOH A 41 341 55 HOH HOH . 
E 3 HOH A 42 342 76 HOH HOH . 
E 3 HOH A 43 343 196 HOH HOH . 
E 3 HOH A 44 344 40 HOH HOH . 
E 3 HOH A 45 345 13 HOH HOH . 
E 3 HOH A 46 346 105 HOH HOH . 
E 3 HOH A 47 347 237 HOH HOH . 
E 3 HOH A 48 348 123 HOH HOH . 
E 3 HOH A 49 349 85 HOH HOH . 
E 3 HOH A 50 350 117 HOH HOH . 
E 3 HOH A 51 351 11 HOH HOH . 
E 3 HOH A 52 352 126 HOH HOH . 
E 3 HOH A 53 353 72 HOH HOH . 
E 3 HOH A 54 354 18 HOH HOH . 
E 3 HOH A 55 355 27 HOH HOH . 
E 3 HOH A 56 356 103 HOH HOH . 
E 3 HOH A 57 357 144 HOH HOH . 
E 3 HOH A 58 358 218 HOH HOH . 
E 3 HOH A 59 359 5 HOH HOH . 
E 3 HOH A 60 360 182 HOH HOH . 
E 3 HOH A 61 361 44 HOH HOH . 
E 3 HOH A 62 362 37 HOH HOH . 
E 3 HOH A 63 363 21 HOH HOH . 
E 3 HOH A 64 364 25 HOH HOH . 
E 3 HOH A 65 365 157 HOH HOH . 
E 3 HOH A 66 366 30 HOH HOH . 
E 3 HOH A 67 367 92 HOH HOH . 
E 3 HOH A 68 368 6 HOH HOH . 
E 3 HOH A 69 369 212 HOH HOH . 
E 3 HOH A 70 370 142 HOH HOH . 
E 3 HOH A 71 371 258 HOH HOH . 
E 3 HOH A 72 372 70 HOH HOH . 
E 3 HOH A 73 373 180 HOH HOH . 
E 3 HOH A 74 374 133 HOH HOH . 
E 3 HOH A 75 375 56 HOH HOH . 
E 3 HOH A 76 376 23 HOH HOH . 
E 3 HOH A 77 377 62 HOH HOH . 
E 3 HOH A 78 378 134 HOH HOH . 
E 3 HOH A 79 379 51 HOH HOH . 
E 3 HOH A 80 380 171 HOH HOH . 
E 3 HOH A 81 381 26 HOH HOH . 
E 3 HOH A 82 382 162 HOH HOH . 
E 3 HOH A 83 383 8 HOH HOH . 
E 3 HOH A 84 384 24 HOH HOH . 
E 3 HOH A 85 385 94 HOH HOH . 
E 3 HOH A 86 386 81 HOH HOH . 
E 3 HOH A 87 387 93 HOH HOH . 
E 3 HOH A 88 388 82 HOH HOH . 
E 3 HOH A 89 389 154 HOH HOH . 
E 3 HOH A 90 390 9 HOH HOH . 
E 3 HOH A 91 391 87 HOH HOH . 
E 3 HOH A 92 392 48 HOH HOH . 
E 3 HOH A 93 393 36 HOH HOH . 
E 3 HOH A 94 394 45 HOH HOH . 
E 3 HOH A 95 395 28 HOH HOH . 
E 3 HOH A 96 396 203 HOH HOH . 
E 3 HOH A 97 397 17 HOH HOH . 
E 3 HOH A 98 398 80 HOH HOH . 
E 3 HOH A 99 399 4 HOH HOH . 
E 3 HOH A 100 400 176 HOH HOH . 
E 3 HOH A 101 401 2 HOH HOH . 
E 3 HOH A 102 402 97 HOH HOH . 
E 3 HOH A 103 403 42 HOH HOH . 
E 3 HOH A 104 404 245 HOH HOH . 
E 3 HOH A 105 405 271 HOH HOH . 
E 3 HOH A 106 406 216 HOH HOH . 
E 3 HOH A 107 407 191 HOH HOH . 
E 3 HOH A 108 408 160 HOH HOH . 
E 3 HOH A 109 409 63 HOH HOH . 
E 3 HOH A 110 410 32 HOH HOH . 
E 3 HOH A 111 411 177 HOH HOH . 
E 3 HOH A 112 412 169 HOH HOH . 
E 3 HOH A 113 413 46 HOH HOH . 
E 3 HOH A 114 414 54 HOH HOH . 
E 3 HOH A 115 415 135 HOH HOH . 
E 3 HOH A 116 416 39 HOH HOH . 
E 3 HOH A 117 417 66 HOH HOH . 
E 3 HOH A 118 418 86 HOH HOH . 
E 3 HOH A 119 419 12 HOH HOH . 
E 3 HOH A 120 420 173 HOH HOH . 
E 3 HOH A 121 421 101 HOH HOH . 
E 3 HOH A 122 422 217 HOH HOH . 
E 3 HOH A 123 423 100 HOH HOH . 
E 3 HOH A 124 424 98 HOH HOH . 
E 3 HOH A 125 425 175 HOH HOH . 
E 3 HOH A 126 426 79 HOH HOH . 
E 3 HOH A 127 427 247 HOH HOH . 
E 3 HOH A 128 428 194 HOH HOH . 
E 3 HOH A 129 429 204 HOH HOH . 
E 3 HOH A 130 430 109 HOH HOH . 
E 3 HOH A 131 431 3 HOH HOH . 
E 3 HOH A 132 432 152 HOH HOH . 
E 3 HOH A 133 433 99 HOH HOH . 
E 3 HOH A 134 434 189 HOH HOH . 
E 3 HOH A 135 435 251 HOH HOH . 
E 3 HOH A 136 436 75 HOH HOH . 
E 3 HOH A 137 437 181 HOH HOH . 
E 3 HOH A 138 438 108 HOH HOH . 
E 3 HOH A 139 439 69 HOH HOH . 
E 3 HOH A 140 440 78 HOH HOH . 
E 3 HOH A 141 441 38 HOH HOH . 
E 3 HOH A 142 442 210 HOH HOH . 
E 3 HOH A 143 443 104 HOH HOH . 
E 3 HOH A 144 444 248 HOH HOH . 
E 3 HOH A 145 445 199 HOH HOH . 
E 3 HOH A 146 446 60 HOH HOH . 
E 3 HOH A 147 447 231 HOH HOH . 
E 3 HOH A 148 448 238 HOH HOH . 
E 3 HOH A 149 449 188 HOH HOH . 
E 3 HOH A 150 450 250 HOH HOH . 
E 3 HOH A 151 451 256 HOH HOH . 
E 3 HOH A 152 452 257 HOH HOH . 
E 3 HOH A 153 453 214 HOH HOH . 
E 3 HOH A 154 454 184 HOH HOH . 
E 3 HOH A 155 455 127 HOH HOH . 
E 3 HOH A 156 456 163 HOH HOH . 
E 3 HOH A 157 457 132 HOH HOH . 
E 3 HOH A 158 458 239 HOH HOH . 
E 3 HOH A 159 459 138 HOH HOH . 
E 3 HOH A 160 460 107 HOH HOH . 
E 3 HOH A 161 461 252 HOH HOH . 
E 3 HOH A 162 462 136 HOH HOH . 
E 3 HOH A 163 463 255 HOH HOH . 
E 3 HOH A 164 464 165 HOH HOH . 
E 3 HOH A 165 465 200 HOH HOH . 
E 3 HOH A 166 466 155 HOH HOH . 
E 3 HOH A 167 467 202 HOH HOH . 
E 3 HOH A 168 468 113 HOH HOH . 
E 3 HOH A 169 469 145 HOH HOH . 
E 3 HOH A 170 470 201 HOH HOH . 
E 3 HOH A 171 471 89 HOH HOH . 
E 3 HOH A 172 472 96 HOH HOH . 
E 3 HOH A 173 473 90 HOH HOH . 
E 3 HOH A 174 474 58 HOH HOH . 
E 3 HOH A 175 475 230 HOH HOH . 
E 3 HOH A 176 476 143 HOH HOH . 
E 3 HOH A 177 477 193 HOH HOH . 
E 3 HOH A 178 478 52 HOH HOH . 
E 3 HOH A 179 479 112 HOH HOH . 
E 3 HOH A 180 480 187 HOH HOH . 
E 3 HOH A 181 481 118 HOH HOH . 
E 3 HOH A 182 482 246 HOH HOH . 
E 3 HOH A 183 483 67 HOH HOH . 
E 3 HOH A 184 484 207 HOH HOH . 
E 3 HOH A 185 485 220 HOH HOH . 
E 3 HOH A 186 486 111 HOH HOH . 
E 3 HOH A 187 487 167 HOH HOH . 
E 3 HOH A 188 488 84 HOH HOH . 
E 3 HOH A 189 489 141 HOH HOH . 
E 3 HOH A 190 490 41 HOH HOH . 
E 3 HOH A 191 491 164 HOH HOH . 
E 3 HOH A 192 492 128 HOH HOH . 
E 3 HOH A 193 493 253 HOH HOH . 
E 3 HOH A 194 494 244 HOH HOH . 
E 3 HOH A 195 495 206 HOH HOH . 
E 3 HOH A 196 496 211 HOH HOH . 
E 3 HOH A 197 497 91 HOH HOH . 
E 3 HOH A 198 498 259 HOH HOH . 
E 3 HOH A 199 499 129 HOH HOH . 
E 3 HOH A 200 500 64 HOH HOH . 
E 3 HOH A 201 501 197 HOH HOH . 
E 3 HOH A 202 502 219 HOH HOH . 
E 3 HOH A 203 503 172 HOH HOH . 
E 3 HOH A 204 504 229 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P P PO4 . . . D 2 35.134 50.996 13.177 0.67 41.27 ? P PO4 203 A 1 
HETATM 2 O O1 PO4 . . . D 2 34.316 51.901 12.284 0.67 40.36 ? O1 PO4 203 A 1 
HETATM 3 O O2 PO4 . . . D 2 34.827 49.551 12.854 0.67 41.53 ? O2 PO4 203 A 1 
HETATM 4 O O3 PO4 . . . D 2 34.808 51.3 14.623 0.67 35.69 ? O3 PO4 203 A 1 
HETATM 5 O O4 PO4 . . . D 2 36.607 51.247 12.939 0.67 44.89 ? O4 PO4 203 A 1 
#
_model_server_stats.io_time_ms              18 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           261 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           5 
#