data_5YY1 # _model_server_result.job_id PvwMNL2JKPvX32O76B2iVA _model_server_result.datetime_utc '2025-08-04 06:14:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5yy1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":203}' # _entry.id 5YY1 # _exptl.entry_id 5YY1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 466.859 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-[4-[6-chloranyl-8-fluoranyl-7-[2-(trifluoromethyl)phenyl]quinazolin-4-yl]piperazin-1-yl]propan-1-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5YY1 _cell.length_a 40.391 _cell.length_b 51.73 _cell.length_c 89.242 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5YY1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 13 A CYS 12 1_555 D C14 94F . A 94F 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.617 ? metalc ? metalc1 A OG SER 18 A SER 17 1_555 B MG MG . A MG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.176 ? metalc ? metalc2 B MG MG . A MG 201 1_555 C O3B GDP . A GDP 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.159 ? metalc ? metalc3 B MG MG . A MG 201 1_555 G O HOH . A HOH 312 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.13 ? metalc ? metalc4 B MG MG . A MG 201 1_555 G O HOH . A HOH 324 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? metalc ? metalc5 B MG MG . A MG 201 1_555 G O HOH . A HOH 341 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.119 ? metalc ? metalc6 B MG MG . A MG 201 1_555 G O HOH . A HOH 377 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.106 ? # _chem_comp.formula 'C22 H19 Cl F4 N4 O' _chem_comp.formula_weight 466.859 _chem_comp.id 94F _chem_comp.mon_nstd_flag . _chem_comp.name 1-[4-[6-chloranyl-8-fluoranyl-7-[2-(trifluoromethyl)phenyl]quinazolin-4-yl]piperazin-1-yl]propan-1-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O15 C12 94F doub 1 n n F26 C25 94F sing 2 n n F28 C25 94F sing 3 n n F27 C25 94F sing 4 n n C14 C13 94F sing 5 n n C10 N11 94F sing 6 n n C10 C9 94F sing 7 n n C25 C24 94F sing 8 n n C12 C13 94F sing 9 n n C12 N11 94F sing 10 n n N11 C16 94F sing 11 n n C9 N8 94F sing 12 n n C24 C29 94F doub 13 n y C24 C23 94F sing 14 n y C29 C30 94F sing 15 n y N6 C5 94F doub 16 n y N6 C7 94F sing 17 n y C5 N4 94F sing 18 n y C16 C17 94F sing 19 n n C17 N8 94F sing 20 n n N8 C7 94F sing 21 n n C7 C18 94F doub 22 n y N4 C3 94F doub 23 n y C3 C18 94F sing 24 n y C3 C2 94F sing 25 n y C18 C19 94F sing 26 n y F1 C2 94F sing 27 n n C19 C20 94F doub 28 n y C2 C22 94F doub 29 n y C20 C22 94F sing 30 n y C20 CL 94F sing 31 n n C22 C23 94F sing 32 n n C23 C32 94F doub 33 n y C30 C31 94F doub 34 n y C32 C31 94F sing 35 n y C31 H1 94F sing 36 n n C30 H2 94F sing 37 n n C32 H3 94F sing 38 n n C29 H4 94F sing 39 n n C19 H5 94F sing 40 n n C5 H6 94F sing 41 n n C14 H7 94F sing 42 n n C14 H8 94F sing 43 n n C14 H9 94F sing 44 n n C13 H10 94F sing 45 n n C13 H11 94F sing 46 n n C9 H12 94F sing 47 n n C9 H13 94F sing 48 n n C17 H14 94F sing 49 n n C17 H15 94F sing 50 n n C10 H16 94F sing 51 n n C10 H17 94F sing 52 n n C16 H18 94F sing 53 n n C16 H19 94F sing 54 n n # _atom_sites.entry_id 5YY1 _atom_sites.fract_transf_matrix[1][1] 0.024758 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019331 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011205 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG A 1 201 199 MG MG . C 3 GDP A 1 202 200 GDP GDP . D 4 94F A 1 203 201 94F UNL . E 5 EDO A 1 204 1 EDO EDO . F 5 EDO A 1 205 2 EDO EDO . G 6 HOH A 1 301 138 HOH HOH . G 6 HOH A 2 302 94 HOH HOH . G 6 HOH A 3 303 74 HOH HOH . G 6 HOH A 4 304 92 HOH HOH . G 6 HOH A 5 305 41 HOH HOH . G 6 HOH A 6 306 32 HOH HOH . G 6 HOH A 7 307 100 HOH HOH . G 6 HOH A 8 308 33 HOH HOH . G 6 HOH A 9 309 36 HOH HOH . G 6 HOH A 10 310 133 HOH HOH . G 6 HOH A 11 311 76 HOH HOH . G 6 HOH A 12 312 68 HOH HOH . G 6 HOH A 13 313 46 HOH HOH . G 6 HOH A 14 314 31 HOH HOH . G 6 HOH A 15 315 40 HOH HOH . G 6 HOH A 16 316 13 HOH HOH . G 6 HOH A 17 317 29 HOH HOH . G 6 HOH A 18 318 89 HOH HOH . G 6 HOH A 19 319 47 HOH HOH . G 6 HOH A 20 320 10 HOH HOH . G 6 HOH A 21 321 86 HOH HOH . G 6 HOH A 22 322 126 HOH HOH . G 6 HOH A 23 323 83 HOH HOH . G 6 HOH A 24 324 70 HOH HOH . G 6 HOH A 25 325 20 HOH HOH . G 6 HOH A 26 326 3 HOH HOH . G 6 HOH A 27 327 71 HOH HOH . G 6 HOH A 28 328 51 HOH HOH . G 6 HOH A 29 329 19 HOH HOH . G 6 HOH A 30 330 18 HOH HOH . G 6 HOH A 31 331 135 HOH HOH . G 6 HOH A 32 332 25 HOH HOH . G 6 HOH A 33 333 131 HOH HOH . G 6 HOH A 34 334 121 HOH HOH . G 6 HOH A 35 335 5 HOH HOH . G 6 HOH A 36 336 102 HOH HOH . G 6 HOH A 37 337 79 HOH HOH . G 6 HOH A 38 338 49 HOH HOH . G 6 HOH A 39 339 7 HOH HOH . G 6 HOH A 40 340 48 HOH HOH . G 6 HOH A 41 341 67 HOH HOH . G 6 HOH A 42 342 134 HOH HOH . G 6 HOH A 43 343 87 HOH HOH . G 6 HOH A 44 344 35 HOH HOH . G 6 HOH A 45 345 16 HOH HOH . G 6 HOH A 46 346 113 HOH HOH . G 6 HOH A 47 347 45 HOH HOH . G 6 HOH A 48 348 108 HOH HOH . G 6 HOH A 49 349 61 HOH HOH . G 6 HOH A 50 350 140 HOH HOH . G 6 HOH A 51 351 12 HOH HOH . G 6 HOH A 52 352 2 HOH HOH . G 6 HOH A 53 353 30 HOH HOH . G 6 HOH A 54 354 78 HOH HOH . G 6 HOH A 55 355 4 HOH HOH . G 6 HOH A 56 356 14 HOH HOH . G 6 HOH A 57 357 91 HOH HOH . G 6 HOH A 58 358 1 HOH HOH . G 6 HOH A 59 359 60 HOH HOH . G 6 HOH A 60 360 66 HOH HOH . G 6 HOH A 61 361 24 HOH HOH . G 6 HOH A 62 362 72 HOH HOH . G 6 HOH A 63 363 95 HOH HOH . G 6 HOH A 64 364 97 HOH HOH . G 6 HOH A 65 365 9 HOH HOH . G 6 HOH A 66 366 28 HOH HOH . G 6 HOH A 67 367 129 HOH HOH . G 6 HOH A 68 368 96 HOH HOH . G 6 HOH A 69 369 137 HOH HOH . G 6 HOH A 70 370 62 HOH HOH . G 6 HOH A 71 371 17 HOH HOH . G 6 HOH A 72 372 99 HOH HOH . G 6 HOH A 73 373 114 HOH HOH . G 6 HOH A 74 374 116 HOH HOH . G 6 HOH A 75 375 54 HOH HOH . G 6 HOH A 76 376 58 HOH HOH . G 6 HOH A 77 377 69 HOH HOH . G 6 HOH A 78 378 122 HOH HOH . G 6 HOH A 79 379 82 HOH HOH . G 6 HOH A 80 380 84 HOH HOH . G 6 HOH A 81 381 27 HOH HOH . G 6 HOH A 82 382 98 HOH HOH . G 6 HOH A 83 383 50 HOH HOH . G 6 HOH A 84 384 77 HOH HOH . G 6 HOH A 85 385 136 HOH HOH . G 6 HOH A 86 386 26 HOH HOH . G 6 HOH A 87 387 123 HOH HOH . G 6 HOH A 88 388 57 HOH HOH . G 6 HOH A 89 389 6 HOH HOH . G 6 HOH A 90 390 128 HOH HOH . G 6 HOH A 91 391 55 HOH HOH . G 6 HOH A 92 392 107 HOH HOH . G 6 HOH A 93 393 65 HOH HOH . G 6 HOH A 94 394 11 HOH HOH . G 6 HOH A 95 395 75 HOH HOH . G 6 HOH A 96 396 139 HOH HOH . G 6 HOH A 97 397 124 HOH HOH . G 6 HOH A 98 398 53 HOH HOH . G 6 HOH A 99 399 23 HOH HOH . G 6 HOH A 100 400 111 HOH HOH . G 6 HOH A 101 401 15 HOH HOH . G 6 HOH A 102 402 63 HOH HOH . G 6 HOH A 103 403 130 HOH HOH . G 6 HOH A 104 404 88 HOH HOH . G 6 HOH A 105 405 34 HOH HOH . G 6 HOH A 106 406 22 HOH HOH . G 6 HOH A 107 407 119 HOH HOH . G 6 HOH A 108 408 39 HOH HOH . G 6 HOH A 109 409 8 HOH HOH . G 6 HOH A 110 410 38 HOH HOH . G 6 HOH A 111 411 21 HOH HOH . G 6 HOH A 112 412 109 HOH HOH . G 6 HOH A 113 413 37 HOH HOH . G 6 HOH A 114 414 125 HOH HOH . G 6 HOH A 115 415 110 HOH HOH . G 6 HOH A 116 416 85 HOH HOH . G 6 HOH A 117 417 106 HOH HOH . G 6 HOH A 118 418 105 HOH HOH . G 6 HOH A 119 419 127 HOH HOH . G 6 HOH A 120 420 59 HOH HOH . G 6 HOH A 121 421 90 HOH HOH . G 6 HOH A 122 422 132 HOH HOH . G 6 HOH A 123 423 73 HOH HOH . G 6 HOH A 124 424 93 HOH HOH . G 6 HOH A 125 425 112 HOH HOH . G 6 HOH A 126 426 56 HOH HOH . G 6 HOH A 127 427 44 HOH HOH . G 6 HOH A 128 428 81 HOH HOH . G 6 HOH A 129 429 52 HOH HOH . G 6 HOH A 130 430 80 HOH HOH . G 6 HOH A 131 431 42 HOH HOH . G 6 HOH A 132 432 64 HOH HOH . G 6 HOH A 133 433 101 HOH HOH . G 6 HOH A 134 434 43 HOH HOH . G 6 HOH A 135 435 104 HOH HOH . G 6 HOH A 136 436 118 HOH HOH . G 6 HOH A 137 437 117 HOH HOH . G 6 HOH A 138 438 103 HOH HOH . G 6 HOH A 139 439 115 HOH HOH . G 6 HOH A 140 440 120 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C31 94F . . . D 4 16.511 -4.125 24.817 1 32.17 ? C31 94F 203 A 1 HETATM 2 C C30 94F . . . D 4 15.606 -4.26 23.787 1 32.36 ? C30 94F 203 A 1 HETATM 3 C C32 94F . . . D 4 17.84 -3.91 24.531 1 31.54 ? C32 94F 203 A 1 HETATM 4 C C29 94F . . . D 4 16.037 -4.183 22.484 1 32.47 ? C29 94F 203 A 1 HETATM 5 C C19 94F . . . D 4 21.614 -2.199 22.881 1 29.12 ? C19 94F 203 A 1 HETATM 6 C C5 94F . . . D 4 23.964 -5.464 22.54 1 29.57 ? C5 94F 203 A 1 HETATM 7 C C18 94F . . . D 4 22.453 -3.293 22.771 1 29.13 ? C18 94F 203 A 1 HETATM 8 C C23 94F . . . D 4 18.284 -3.829 23.223 1 31.43 ? C23 94F 203 A 1 HETATM 9 C C22 94F . . . D 4 19.692 -3.612 23.019 1 29.79 ? C22 94F 203 A 1 HETATM 10 C C24 94F . . . D 4 17.372 -3.972 22.203 1 32.05 ? C24 94F 203 A 1 HETATM 11 C C3 94F . . . D 4 21.9 -4.565 22.77 1 29.39 ? C3 94F 203 A 1 HETATM 12 C C2 94F . . . D 4 20.533 -4.693 22.895 1 29.45 ? C2 94F 203 A 1 HETATM 13 C C20 94F . . . D 4 20.247 -2.347 23.012 1 29.51 ? C20 94F 203 A 1 HETATM 14 C C7 94F . . . D 4 23.836 -3.189 22.644 1 28.94 ? C7 94F 203 A 1 HETATM 15 C C14 94F . . . D 4 29.536 0.583 20.69 1 25.47 ? C14 94F 203 A 1 HETATM 16 C C13 94F . . . D 4 28.376 1.143 21.474 1 26.4 ? C13 94F 203 A 1 HETATM 17 C C12 94F . . . D 4 27.093 0.85 20.795 1 26.1 ? C12 94F 203 A 1 HETATM 18 C C9 94F . . . D 4 23.979 -0.953 21.731 1 28.62 ? C9 94F 203 A 1 HETATM 19 C C17 94F . . . D 4 25.969 -2.149 22.595 1 29.17 ? C17 94F 203 A 1 HETATM 20 C C10 94F . . . D 4 25.024 -0.39 20.794 1 28.12 ? C10 94F 203 A 1 HETATM 21 C C16 94F . . . D 4 26.678 -0.809 22.586 1 28.22 ? C16 94F 203 A 1 HETATM 22 C C25 94F . . . D 4 17.826 -3.897 20.794 1 32.91 ? C25 94F 203 A 1 HETATM 23 N N4 94F . . . D 4 22.652 -5.665 22.653 1 29.29 ? N4 94F 203 A 1 HETATM 24 N N6 94F . . . D 4 24.595 -4.289 22.534 1 29.7 ? N6 94F 203 A 1 HETATM 25 N N8 94F . . . D 4 24.523 -1.948 22.642 1 29.33 ? N8 94F 203 A 1 HETATM 26 N N11 94F . . . D 4 26.238 0.005 21.476 1 27.18 ? N11 94F 203 A 1 HETATM 27 O O15 94F . . . D 4 26.847 1.362 19.713 1 25.34 ? O15 94F 203 A 1 HETATM 28 F F1 94F . . . D 4 19.995 -5.935 22.878 1 29.69 ? F1 94F 203 A 1 HETATM 29 F F26 94F . . . D 4 16.791 -3.77 19.931 1 34.77 ? F26 94F 203 A 1 HETATM 30 F F27 94F . . . D 4 18.674 -2.862 20.538 1 31.92 ? F27 94F 203 A 1 HETATM 31 F F28 94F . . . D 4 18.495 -5.026 20.445 1 33.49 ? F28 94F 203 A 1 HETATM 32 CL CL 94F . . . D 4 19.224 -0.96 23.165 1 29.22 ? CL 94F 203 A 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 461 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 32 #