data_5YY6 # _model_server_result.job_id N8ccRhIQDY5fc1LLqacXug _model_server_result.datetime_utc '2024-11-23 01:57:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5yy6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":502}' # _entry.id 5YY6 # _exptl.entry_id 5YY6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 418.442 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3-(2,6-dimethylphenyl)-1-methyl-6-(2-oxidanyl-6-oxidanylidene-cyclohexen-1-yl)carbonyl-quinazoline-2,4-dione _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 100.17 _cell.angle_gamma 90 _cell.entry_id 5YY6 _cell.length_a 77.333 _cell.length_b 83.883 _cell.length_c 66.31 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5YY6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_455 -x-1,y,-z -1 0 0 0 1 0 0 0 -1 -77.333 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 371 A CYS 401 1_555 A SG CYS 386 A CYS 416 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? metalc ? metalc1 A NE2 HIS 196 A HIS 226 1_555 B CO CO . A CO 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.368 ? metalc ? metalc2 A NE2 HIS 278 A HIS 308 1_555 B CO CO . A CO 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.372 ? metalc ? metalc3 A OE1 GLU 364 A GLU 394 1_555 B CO CO . A CO 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.234 ? metalc ? metalc4 B CO CO . A CO 501 1_555 C O8 94L . A 94L 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.3 ? metalc ? metalc5 B CO CO . A CO 501 1_555 C O11 94L . A 94L 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.078 ? metalc ? metalc6 B CO CO . A CO 501 1_555 D O HOH . A HOH 611 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.34 ? # _chem_comp.formula 'C24 H22 N2 O5' _chem_comp.formula_weight 418.442 _chem_comp.id 94L _chem_comp.mon_nstd_flag . _chem_comp.name 3-(2,6-dimethylphenyl)-1-methyl-6-(2-oxidanyl-6-oxidanylidene-cyclohexen-1-yl)carbonyl-quinazoline-2,4-dione _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O8 C4 94L doub 1 n n O11 C9 94L doub 2 n n C4 C3 94L sing 3 n n C4 C5 94L sing 4 n n C29 C24 94L sing 5 n n C3 C2 94L sing 6 n n C9 C5 94L sing 7 n n C9 C10 94L sing 8 n n O19 C17 94L doub 9 n n C5 C6 94L doub 10 n n C25 C24 94L doub 11 n y C25 C26 94L sing 12 n y C16 C10 94L doub 13 n y C16 C15 94L sing 14 n y C24 C20 94L sing 15 n y C10 C12 94L sing 16 n y C17 C15 94L sing 17 n n C17 N18 94L sing 18 n n C2 C1 94L sing 19 n n C26 C27 94L doub 20 n y C15 C14 94L doub 21 n y C6 C1 94L sing 22 n n C6 O7 94L sing 23 n n C20 N18 94L sing 24 n n C20 C28 94L doub 25 n y C12 C13 94L doub 26 n y N18 C21 94L sing 27 n n C14 C13 94L sing 28 n y C14 N23 94L sing 29 n n C27 C28 94L sing 30 n y C28 C30 94L sing 31 n n C21 N23 94L sing 32 n n C21 O22 94L doub 33 n n N23 C31 94L sing 34 n n C13 H1 94L sing 35 n n C26 H2 94L sing 36 n n C1 H3 94L sing 37 n n C1 H4 94L sing 38 n n C2 H5 94L sing 39 n n C2 H6 94L sing 40 n n C3 H7 94L sing 41 n n C3 H8 94L sing 42 n n O7 H11 94L sing 43 n n C12 H12 94L sing 44 n n C16 H13 94L sing 45 n n C25 H14 94L sing 46 n n C27 H15 94L sing 47 n n C29 H16 94L sing 48 n n C29 H17 94L sing 49 n n C29 H18 94L sing 50 n n C30 H19 94L sing 51 n n C30 H20 94L sing 52 n n C30 H21 94L sing 53 n n C31 H22 94L sing 54 n n C31 H23 94L sing 55 n n C31 H24 94L sing 56 n n # _atom_sites.entry_id 5YY6 _atom_sites.fract_transf_matrix[1][1] 0.012931 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002321 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011921 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015322 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CO A 1 501 499 CO CO . C 3 94L A 1 502 500 94L LIG . D 4 HOH A 1 601 31 HOH HOH . D 4 HOH A 2 602 7 HOH HOH . D 4 HOH A 3 603 25 HOH HOH . D 4 HOH A 4 604 38 HOH HOH . D 4 HOH A 5 605 4 HOH HOH . D 4 HOH A 6 606 58 HOH HOH . D 4 HOH A 7 607 16 HOH HOH . D 4 HOH A 8 608 52 HOH HOH . D 4 HOH A 9 609 28 HOH HOH . D 4 HOH A 10 610 3 HOH HOH . D 4 HOH A 11 611 67 HOH HOH . D 4 HOH A 12 612 20 HOH HOH . D 4 HOH A 13 613 9 HOH HOH . D 4 HOH A 14 614 2 HOH HOH . D 4 HOH A 15 615 12 HOH HOH . D 4 HOH A 16 616 11 HOH HOH . D 4 HOH A 17 617 22 HOH HOH . D 4 HOH A 18 618 5 HOH HOH . D 4 HOH A 19 619 21 HOH HOH . D 4 HOH A 20 620 10 HOH HOH . D 4 HOH A 21 621 18 HOH HOH . D 4 HOH A 22 622 6 HOH HOH . D 4 HOH A 23 623 15 HOH HOH . D 4 HOH A 24 624 17 HOH HOH . D 4 HOH A 25 625 13 HOH HOH . D 4 HOH A 26 626 60 HOH HOH . D 4 HOH A 27 627 62 HOH HOH . D 4 HOH A 28 628 19 HOH HOH . D 4 HOH A 29 629 23 HOH HOH . D 4 HOH A 30 630 24 HOH HOH . D 4 HOH A 31 631 61 HOH HOH . D 4 HOH A 32 632 8 HOH HOH . D 4 HOH A 33 633 1 HOH HOH . D 4 HOH A 34 634 59 HOH HOH . D 4 HOH A 35 635 66 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 94L . . . C 3 -25.308 -0.132 22.065 1 49.28 ? C10 94L 502 A 1 HETATM 2 C C13 94L . . . C 3 -26.202 1.258 23.774 1 55.89 ? C13 94L 502 A 1 HETATM 3 C C15 94L . . . C 3 -27.638 -0.26 22.615 1 50.39 ? C15 94L 502 A 1 HETATM 4 C C17 94L . . . C 3 -28.868 -0.8 22.425 1 54.04 ? C17 94L 502 A 1 HETATM 5 C C20 94L . . . C 3 -31.224 -0.942 22.965 1 53.43 ? C20 94L 502 A 1 HETATM 6 C C21 94L . . . C 3 -29.704 0.578 24.096 1 57.34 ? C21 94L 502 A 1 HETATM 7 C C24 94L . . . C 3 -31.992 -0.575 21.865 1 50.77 ? C24 94L 502 A 1 HETATM 8 C C26 94L . . . C 3 -33.774 -2 22.611 1 55.81 ? C26 94L 502 A 1 HETATM 9 C C28 94L . . . C 3 -31.745 -1.838 23.889 1 54.4 ? C28 94L 502 A 1 HETATM 10 C C1 94L . . . C 3 -22.682 -3.724 22.877 1 47.73 ? C1 94L 502 A 1 HETATM 11 C C2 94L . . . C 3 -21.206 -3.577 22.56 1 40.1 ? C2 94L 502 A 1 HETATM 12 C C3 94L . . . C 3 -21.031 -3.164 21.107 1 45.48 ? C3 94L 502 A 1 HETATM 13 C C4 94L . . . C 3 -21.924 -1.966 20.777 1 46.5 ? C4 94L 502 A 1 HETATM 14 C C5 94L . . . C 3 -23.126 -1.638 21.673 1 44.4 ? C5 94L 502 A 1 HETATM 15 C C6 94L . . . C 3 -23.352 -2.361 22.762 1 49.91 ? C6 94L 502 A 1 HETATM 16 O O7 94L . . . C 3 -23.708 -1.72 23.955 1 56.67 ? O7 94L 502 A 1 HETATM 17 O O8 94L . . . C 3 -21.675 -1.297 19.827 1 42.89 ? O8 94L 502 A 1 HETATM 18 C C9 94L . . . C 3 -24.116 -0.567 21.221 1 45.46 ? C9 94L 502 A 1 HETATM 19 O O11 94L . . . C 3 -23.966 -0.021 20.178 1 41.43 ? O11 94L 502 A 1 HETATM 20 C C12 94L . . . C 3 -25.127 0.841 23.019 1 51.06 ? C12 94L 502 A 1 HETATM 21 C C14 94L . . . C 3 -27.458 0.699 23.567 1 52.19 ? C14 94L 502 A 1 HETATM 22 C C16 94L . . . C 3 -26.557 -0.685 21.851 1 46.14 ? C16 94L 502 A 1 HETATM 23 N N18 94L . . . C 3 -29.893 -0.383 23.156 1 54.57 ? N18 94L 502 A 1 HETATM 24 O O19 94L . . . C 3 -29.036 -1.637 21.6 1 51.23 ? O19 94L 502 A 1 HETATM 25 O O22 94L . . . C 3 -30.619 0.946 24.756 1 61.69 ? O22 94L 502 A 1 HETATM 26 N N23 94L . . . C 3 -28.479 1.108 24.295 1 56.36 ? N23 94L 502 A 1 HETATM 27 C C25 94L . . . C 3 -33.261 -1.106 21.691 1 53.28 ? C25 94L 502 A 1 HETATM 28 C C27 94L . . . C 3 -33.014 -2.356 23.707 1 52.05 ? C27 94L 502 A 1 HETATM 29 C C29 94L . . . C 3 -31.467 0.407 20.823 1 46.13 ? C29 94L 502 A 1 HETATM 30 C C30 94L . . . C 3 -30.937 -2.262 25.115 1 59.76 ? C30 94L 502 A 1 HETATM 31 C C31 94L . . . C 3 -28.293 2.133 25.308 1 56.32 ? C31 94L 502 A 1 # _model_server_stats.io_time_ms 22 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 23 _model_server_stats.query_time_ms 266 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 31 #