data_5YY7 # _model_server_result.job_id yNoEYRUKgvrtLbSWiGGstQ _model_server_result.datetime_utc '2024-11-15 09:28:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5yy7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":502}' # _entry.id 5YY7 # _exptl.entry_id 5YY7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 418.442 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3-(2,6-dimethylphenyl)-1-methyl-6-(2-oxidanyl-6-oxidanylidene-cyclohexen-1-yl)carbonyl-quinazoline-2,4-dione _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5YY7 _cell.length_a 94.928 _cell.length_b 94.928 _cell.length_c 185.031 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5YY7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 401 A CYS 380 1_555 A SG CYS 416 A CYS 395 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf2 B SG CYS 401 B CYS 380 1_555 B SG CYS 416 B CYS 395 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? metalc ? metalc1 A NE2 HIS 226 A HIS 205 1_555 C CO CO . A CO 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.398 ? metalc ? metalc2 A NE2 HIS 308 A HIS 287 1_555 C CO CO . A CO 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.372 ? metalc ? metalc3 A OE1 GLU 394 A GLU 373 1_555 C CO CO . A CO 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.164 ? metalc ? metalc4 C CO CO . A CO 501 1_555 D O8 94L . A 94L 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.002 ? metalc ? metalc5 C CO CO . A CO 501 1_555 D O11 94L . A 94L 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.396 ? metalc ? metalc6 C CO CO . A CO 501 1_555 G O HOH . A HOH 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.317 ? metalc ? metalc7 B NE2 HIS 226 B HIS 205 1_555 E CO CO . B CO 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.083 ? metalc ? metalc8 B NE2 HIS 308 B HIS 287 1_555 E CO CO . B CO 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.357 ? metalc ? metalc9 B OE2 GLU 394 B GLU 373 1_555 E CO CO . B CO 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.244 ? metalc ? metalc10 E CO CO . B CO 501 1_555 F O8 94L . B 94L 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.342 ? metalc ? metalc11 E CO CO . B CO 501 1_555 F O11 94L . B 94L 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.221 ? metalc ? metalc12 E CO CO . B CO 501 1_555 H O HOH . B HOH 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.343 ? # _chem_comp.formula 'C24 H22 N2 O5' _chem_comp.formula_weight 418.442 _chem_comp.id 94L _chem_comp.mon_nstd_flag . _chem_comp.name 3-(2,6-dimethylphenyl)-1-methyl-6-(2-oxidanyl-6-oxidanylidene-cyclohexen-1-yl)carbonyl-quinazoline-2,4-dione _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O8 C4 94L doub 1 n n O11 C9 94L doub 2 n n C4 C3 94L sing 3 n n C4 C5 94L sing 4 n n C29 C24 94L sing 5 n n C3 C2 94L sing 6 n n C9 C5 94L sing 7 n n C9 C10 94L sing 8 n n O19 C17 94L doub 9 n n C5 C6 94L doub 10 n n C25 C24 94L doub 11 n y C25 C26 94L sing 12 n y C16 C10 94L doub 13 n y C16 C15 94L sing 14 n y C24 C20 94L sing 15 n y C10 C12 94L sing 16 n y C17 C15 94L sing 17 n n C17 N18 94L sing 18 n n C2 C1 94L sing 19 n n C26 C27 94L doub 20 n y C15 C14 94L doub 21 n y C6 C1 94L sing 22 n n C6 O7 94L sing 23 n n C20 N18 94L sing 24 n n C20 C28 94L doub 25 n y C12 C13 94L doub 26 n y N18 C21 94L sing 27 n n C14 C13 94L sing 28 n y C14 N23 94L sing 29 n n C27 C28 94L sing 30 n y C28 C30 94L sing 31 n n C21 N23 94L sing 32 n n C21 O22 94L doub 33 n n N23 C31 94L sing 34 n n C13 H1 94L sing 35 n n C26 H2 94L sing 36 n n C1 H3 94L sing 37 n n C1 H4 94L sing 38 n n C2 H5 94L sing 39 n n C2 H6 94L sing 40 n n C3 H7 94L sing 41 n n C3 H8 94L sing 42 n n O7 H11 94L sing 43 n n C12 H12 94L sing 44 n n C16 H13 94L sing 45 n n C25 H14 94L sing 46 n n C27 H15 94L sing 47 n n C29 H16 94L sing 48 n n C29 H17 94L sing 49 n n C29 H18 94L sing 50 n n C30 H19 94L sing 51 n n C30 H20 94L sing 52 n n C30 H21 94L sing 53 n n C31 H22 94L sing 54 n n C31 H23 94L sing 55 n n C31 H24 94L sing 56 n n # _atom_sites.entry_id 5YY7 _atom_sites.fract_transf_matrix[1][1] 0.010534 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010534 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005404 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CO A 1 501 499 CO CO . D 3 94L A 1 502 500 94L LIG . E 2 CO B 1 501 499 CO CO . F 3 94L B 1 502 500 94L LIG . G 4 HOH A 1 601 2 HOH HOH . H 4 HOH B 1 601 1 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 94L . . . D 3 30.504 6.108 -16.205 1 39.19 ? C10 94L 502 A 1 HETATM 2 C C13 94L . . . D 3 31.384 4.717 -14.481 1 37.83 ? C13 94L 502 A 1 HETATM 3 C C15 94L . . . D 3 30.281 3.726 -16.353 1 43.7 ? C15 94L 502 A 1 HETATM 4 C C17 94L . . . D 3 29.851 2.623 -17.012 1 40.37 ? C17 94L 502 A 1 HETATM 5 C C20 94L . . . D 3 29.612 0.225 -17.193 1 47.59 ? C20 94L 502 A 1 HETATM 6 C C21 94L . . . D 3 30.72 1.296 -15.318 1 38.91 ? C21 94L 502 A 1 HETATM 7 C C24 94L . . . D 3 28.302 -0.212 -17.044 1 49.44 ? C24 94L 502 A 1 HETATM 8 C C26 94L . . . D 3 28.748 -2.061 -18.51 1 48.82 ? C26 94L 502 A 1 HETATM 9 C C28 94L . . . D 3 30.488 -0.489 -18.001 1 54.28 ? C28 94L 502 A 1 HETATM 10 C C1 94L . . . D 3 32.803 8.447 -19.536 1 42.01 ? C1 94L 502 A 1 HETATM 11 C C2 94L . . . D 3 32.334 9.886 -19.683 1 40.42 ? C2 94L 502 A 1 HETATM 12 C C3 94L . . . D 3 30.83 9.911 -19.912 1 43.51 ? C3 94L 502 A 1 HETATM 13 C C4 94L . . . D 3 30.122 9.088 -18.835 1 43.59 ? C4 94L 502 A 1 HETATM 14 C C5 94L . . . D 3 30.876 7.996 -18.066 1 42.89 ? C5 94L 502 A 1 HETATM 15 C C6 94L . . . D 3 32.164 7.807 -18.307 1 48.53 ? C6 94L 502 A 1 HETATM 16 O O7 94L . . . D 3 32.992 7.276 -17.31 1 56.67 ? O7 94L 502 A 1 HETATM 17 O O8 94L . . . D 3 28.983 9.298 -18.588 1 51.42 ? O8 94L 502 A 1 HETATM 18 C C9 94L . . . D 3 30.264 7.511 -16.752 1 40.85 ? C9 94L 502 A 1 HETATM 19 O O11 94L . . . D 3 29.575 8.242 -16.128 1 40.68 ? O11 94L 502 A 1 HETATM 20 C C12 94L . . . D 3 31.162 5.971 -15.006 1 37.77 ? C12 94L 502 A 1 HETATM 21 C C14 94L . . . D 3 30.938 3.593 -15.165 1 40.54 ? C14 94L 502 A 1 HETATM 22 C C16 94L . . . D 3 30.055 4.992 -16.884 1 35.77 ? C16 94L 502 A 1 HETATM 23 N N18 94L . . . D 3 30.068 1.42 -16.499 1 40.09 ? N18 94L 502 A 1 HETATM 24 O O19 94L . . . D 3 29.278 2.733 -18.044 1 40.06 ? O19 94L 502 A 1 HETATM 25 O O22 94L . . . D 3 30.916 0.219 -14.862 1 46.32 ? O22 94L 502 A 1 HETATM 26 N N23 94L . . . D 3 31.153 2.394 -14.66 1 36.19 ? N23 94L 502 A 1 HETATM 27 C C25 94L . . . D 3 27.873 -1.353 -17.704 1 50.22 ? C25 94L 502 A 1 HETATM 28 C C27 94L . . . D 3 30.054 -1.628 -18.657 1 52.95 ? C27 94L 502 A 1 HETATM 29 C C29 94L . . . D 3 27.323 0.555 -16.158 1 51.02 ? C29 94L 502 A 1 HETATM 30 C C30 94L . . . D 3 31.934 -0.028 -18.178 1 44.75 ? C30 94L 502 A 1 HETATM 31 C C31 94L . . . D 3 31.852 2.255 -13.396 1 33.56 ? C31 94L 502 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 369 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 31 #