data_5YZ8 # _model_server_result.job_id af38ByP263V97mYjtk0qyw _model_server_result.datetime_utc '2024-11-24 11:59:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5yz8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"V","auth_seq_id":303}' # _entry.id 5YZ8 # _exptl.entry_id 5YZ8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 35.453 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CHLORIDE ION' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5YZ8 _cell.length_a 108.072 _cell.length_b 108.072 _cell.length_c 224.069 _cell.Z_PDB 36 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5YZ8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 I N N ? 4 J N N ? 4 M N N ? 4 P N N ? 4 S N N ? 4 V N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG1 THR 53 A THR 53 1_555 H MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.945 ? metalc ? metalc2 G O1G ANP . A ANP 301 1_555 H MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.81 ? metalc ? metalc3 G O1B ANP . A ANP 301 1_555 H MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.334 ? metalc ? metalc4 H MG MG . A MG 302 1_555 Y O HOH . A HOH 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.873 ? metalc ? metalc5 H MG MG . A MG 302 1_555 Y O HOH . A HOH 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.093 ? metalc ? metalc6 B OG1 THR 53 B THR 53 1_555 L MG MG . B MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.976 ? metalc ? metalc7 K O1G ANP . B ANP 301 1_555 L MG MG . B MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.817 ? metalc ? metalc8 K O1B ANP . B ANP 301 1_555 L MG MG . B MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.49 ? metalc ? metalc9 L MG MG . B MG 302 1_555 Z O HOH . B HOH 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.319 ? metalc ? metalc10 L MG MG . B MG 302 1_555 Z O HOH . B HOH 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? metalc ? metalc11 C OG1 THR 53 C THR 53 1_555 O MG MG . C MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.097 ? metalc ? metalc12 N O2G ANP . C ANP 301 1_555 O MG MG . C MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.882 ? metalc ? metalc13 N O2B ANP . C ANP 301 1_555 O MG MG . C MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.014 ? metalc ? metalc14 O MG MG . C MG 302 1_555 AA O HOH . C HOH 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.196 ? metalc ? metalc15 O MG MG . C MG 302 1_555 AA O HOH . C HOH 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.2 ? metalc ? metalc16 D OG1 THR 53 D THR 53 1_555 R MG MG . D MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.938 ? metalc ? metalc17 Q O3G ANP . D ANP 301 1_555 R MG MG . D MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.769 ? metalc ? metalc18 Q O2B ANP . D ANP 301 1_555 R MG MG . D MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.248 ? metalc ? metalc19 R MG MG . D MG 302 1_555 BA O HOH . D HOH 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.077 ? metalc ? metalc20 R MG MG . D MG 302 1_555 BA O HOH . D HOH 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.177 ? metalc ? metalc21 E OG1 THR 53 E THR 53 1_555 U MG MG . E MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.016 ? metalc ? metalc22 T O2G ANP . E ANP 301 1_555 U MG MG . E MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.86 ? metalc ? metalc23 T O2B ANP . E ANP 301 1_555 U MG MG . E MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.47 ? metalc ? metalc24 U MG MG . E MG 302 1_555 CA O HOH . E HOH 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.299 ? metalc ? metalc25 U MG MG . E MG 302 1_555 CA O HOH . E HOH 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? metalc ? metalc26 F OG1 THR 53 F THR 53 1_555 X MG MG . F MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.953 ? metalc ? metalc27 W O3G ANP . F ANP 301 1_555 X MG MG . F MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.905 ? metalc ? metalc28 W O1B ANP . F ANP 301 1_555 X MG MG . F MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.478 ? metalc ? metalc29 X MG MG . F MG 302 1_555 DA O HOH . F HOH 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.377 ? metalc ? metalc30 X MG MG . F MG 302 1_555 DA O HOH . F HOH 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.218 ? # _chem_comp.formula 'Cl -1' _chem_comp.formula_weight 35.453 _chem_comp.id CL _chem_comp.mon_nstd_flag . _chem_comp.name 'CHLORIDE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5YZ8 _atom_sites.fract_transf_matrix[1][1] 0.009253 _atom_sites.fract_transf_matrix[1][2] 0.005342 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010685 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004463 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 2 ANP A 1 301 301 ANP ANP . H 3 MG A 1 302 302 MG MG . I 4 CL A 1 303 303 CL CL . J 4 CL A 1 304 304 CL CL . K 2 ANP B 1 301 301 ANP ANP . L 3 MG B 1 302 302 MG MG . M 4 CL B 1 303 303 CL CL . N 2 ANP C 1 301 301 ANP ANP . O 3 MG C 1 302 302 MG MG . P 4 CL C 1 303 303 CL CL . Q 2 ANP D 1 301 301 ANP ANP . R 3 MG D 1 302 302 MG MG . S 4 CL D 1 303 303 CL CL . T 2 ANP E 1 301 301 ANP ANP . U 3 MG E 1 302 302 MG MG . V 4 CL E 1 303 303 CL CL . W 2 ANP F 1 301 301 ANP ANP . X 3 MG F 1 302 302 MG MG . Y 5 HOH A 1 401 401 HOH HOH . Y 5 HOH A 2 402 402 HOH HOH . Y 5 HOH A 3 403 403 HOH HOH . Y 5 HOH A 4 404 404 HOH HOH . Y 5 HOH A 5 405 405 HOH HOH . Y 5 HOH A 6 406 406 HOH HOH . Y 5 HOH A 7 407 407 HOH HOH . Z 5 HOH B 1 401 401 HOH HOH . Z 5 HOH B 2 402 402 HOH HOH . Z 5 HOH B 3 403 403 HOH HOH . Z 5 HOH B 4 404 404 HOH HOH . Z 5 HOH B 5 405 405 HOH HOH . Z 5 HOH B 6 406 406 HOH HOH . AA 5 HOH C 1 401 401 HOH HOH . AA 5 HOH C 2 402 402 HOH HOH . AA 5 HOH C 3 403 403 HOH HOH . AA 5 HOH C 4 404 404 HOH HOH . AA 5 HOH C 5 405 405 HOH HOH . AA 5 HOH C 6 406 406 HOH HOH . BA 5 HOH D 1 401 401 HOH HOH . BA 5 HOH D 2 402 402 HOH HOH . BA 5 HOH D 3 403 403 HOH HOH . BA 5 HOH D 4 404 404 HOH HOH . BA 5 HOH D 5 405 405 HOH HOH . BA 5 HOH D 6 406 406 HOH HOH . BA 5 HOH D 7 407 407 HOH HOH . CA 5 HOH E 1 401 401 HOH HOH . CA 5 HOH E 2 402 402 HOH HOH . CA 5 HOH E 3 403 403 HOH HOH . CA 5 HOH E 4 404 404 HOH HOH . CA 5 HOH E 5 405 405 HOH HOH . DA 5 HOH F 1 401 401 HOH HOH . DA 5 HOH F 2 402 402 HOH HOH . DA 5 HOH F 3 403 403 HOH HOH . DA 5 HOH F 4 404 404 HOH HOH . DA 5 HOH F 5 405 405 HOH HOH . DA 5 HOH F 6 406 406 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CL _atom_site.label_atom_id CL _atom_site.label_comp_id CL _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id V _atom_site.label_entity_id 4 _atom_site.Cartn_x -51.411 _atom_site.Cartn_y -0.74 _atom_site.Cartn_z -16.928 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 48.84 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CL _atom_site.auth_comp_id CL _atom_site.auth_seq_id 303 _atom_site.auth_asym_id E _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 287 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #