data_5YZI
#
_model_server_result.job_id            ZBRmupRIrtcOweHKQEPHYA 
_model_server_result.datetime_utc      '2024-11-28 16:21:38' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5yzi 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":501}' 
#
_entry.id    5YZI 
#
_exptl.entry_id    5YZI 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              112.411 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'CADMIUM ION' 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          113.65 
_cell.angle_gamma         90 
_cell.entry_id            5YZI 
_cell.length_a            98.246 
_cell.length_b            91.428 
_cell.length_c            109.724 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5YZI 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 E N N 
? 2 F N N 
#
_struct_conn.conn_type_id                   metalc 
_struct_conn.details                        ? 
_struct_conn.id                             metalc1 
_struct_conn.ptnr1_label_asym_id            B 
_struct_conn.ptnr1_label_atom_id            SG 
_struct_conn.ptnr1_label_comp_id            CYS 
_struct_conn.ptnr1_label_seq_id             245 
_struct_conn.ptnr1_auth_asym_id             B 
_struct_conn.ptnr1_auth_comp_id             CYS 
_struct_conn.ptnr1_auth_seq_id              245 
_struct_conn.ptnr1_symmetry                 1_555 
_struct_conn.ptnr2_label_asym_id            F 
_struct_conn.ptnr2_label_atom_id            CD 
_struct_conn.ptnr2_label_comp_id            CD 
_struct_conn.ptnr2_label_seq_id             . 
_struct_conn.ptnr2_auth_asym_id             B 
_struct_conn.ptnr2_auth_comp_id             CD 
_struct_conn.ptnr2_auth_seq_id              502 
_struct_conn.ptnr2_symmetry                 1_555 
_struct_conn.pdbx_ptnr1_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr1_label_alt_id        ? 
_struct_conn.pdbx_ptnr1_standard_comp_id    ? 
_struct_conn.pdbx_ptnr2_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr2_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr3_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_label_asym_id       ? 
_struct_conn.pdbx_ptnr3_label_atom_id       ? 
_struct_conn.pdbx_ptnr3_label_comp_id       ? 
_struct_conn.pdbx_ptnr3_label_seq_id        ? 
_struct_conn.pdbx_PDB_id                    ? 
_struct_conn.pdbx_dist_value                3.036 
_struct_conn.pdbx_value_order               ? 
#
_chem_comp.formula           'Cd 2' 
_chem_comp.formula_weight    112.411 
_chem_comp.id                CD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'CADMIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     5YZI 
_atom_sites.fract_transf_matrix[1][1]    0.010179 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.004457 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010938 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009949 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 CD A 1 501 1 CD CD . 
D 3 NAP A 1 502 1 NAP NAP . 
E 2 CD B 1 501 2 CD CD . 
F 2 CD B 1 502 3 CD CD . 
G 3 NAP B 1 503 2 NAP NAP . 
H 4 HOH A 1 601 18 HOH HOH . 
H 4 HOH A 2 602 84 HOH HOH . 
H 4 HOH A 3 603 29 HOH HOH . 
H 4 HOH A 4 604 15 HOH HOH . 
H 4 HOH A 5 605 20 HOH HOH . 
H 4 HOH A 6 606 103 HOH HOH . 
H 4 HOH A 7 607 51 HOH HOH . 
H 4 HOH A 8 608 63 HOH HOH . 
H 4 HOH A 9 609 4 HOH HOH . 
H 4 HOH A 10 610 121 HOH HOH . 
H 4 HOH A 11 611 94 HOH HOH . 
H 4 HOH A 12 612 12 HOH HOH . 
H 4 HOH A 13 613 9 HOH HOH . 
H 4 HOH A 14 614 37 HOH HOH . 
H 4 HOH A 15 615 14 HOH HOH . 
H 4 HOH A 16 616 127 HOH HOH . 
H 4 HOH A 17 617 92 HOH HOH . 
H 4 HOH A 18 618 50 HOH HOH . 
H 4 HOH A 19 619 24 HOH HOH . 
H 4 HOH A 20 620 16 HOH HOH . 
H 4 HOH A 21 621 89 HOH HOH . 
H 4 HOH A 22 622 64 HOH HOH . 
H 4 HOH A 23 623 98 HOH HOH . 
H 4 HOH A 24 624 122 HOH HOH . 
H 4 HOH A 25 625 21 HOH HOH . 
H 4 HOH A 26 626 42 HOH HOH . 
H 4 HOH A 27 627 53 HOH HOH . 
H 4 HOH A 28 628 108 HOH HOH . 
H 4 HOH A 29 629 57 HOH HOH . 
H 4 HOH A 30 630 19 HOH HOH . 
H 4 HOH A 31 631 115 HOH HOH . 
H 4 HOH A 32 632 3 HOH HOH . 
H 4 HOH A 33 633 23 HOH HOH . 
H 4 HOH A 34 634 109 HOH HOH . 
H 4 HOH A 35 635 96 HOH HOH . 
H 4 HOH A 36 636 44 HOH HOH . 
H 4 HOH A 37 637 35 HOH HOH . 
H 4 HOH A 38 638 43 HOH HOH . 
H 4 HOH A 39 639 118 HOH HOH . 
H 4 HOH A 40 640 67 HOH HOH . 
H 4 HOH A 41 641 123 HOH HOH . 
H 4 HOH A 42 642 125 HOH HOH . 
H 4 HOH A 43 643 112 HOH HOH . 
H 4 HOH A 44 644 45 HOH HOH . 
H 4 HOH A 45 645 87 HOH HOH . 
H 4 HOH A 46 646 33 HOH HOH . 
H 4 HOH A 47 647 36 HOH HOH . 
H 4 HOH A 48 648 8 HOH HOH . 
H 4 HOH A 49 649 79 HOH HOH . 
H 4 HOH A 50 650 59 HOH HOH . 
H 4 HOH A 51 651 62 HOH HOH . 
H 4 HOH A 52 652 85 HOH HOH . 
H 4 HOH A 53 653 47 HOH HOH . 
H 4 HOH A 54 654 110 HOH HOH . 
H 4 HOH A 55 655 66 HOH HOH . 
H 4 HOH A 56 656 13 HOH HOH . 
H 4 HOH A 57 657 126 HOH HOH . 
H 4 HOH A 58 658 99 HOH HOH . 
H 4 HOH A 59 659 81 HOH HOH . 
H 4 HOH A 60 660 17 HOH HOH . 
H 4 HOH A 61 661 107 HOH HOH . 
H 4 HOH A 62 662 60 HOH HOH . 
H 4 HOH A 63 663 91 HOH HOH . 
H 4 HOH A 64 664 52 HOH HOH . 
H 4 HOH A 65 665 22 HOH HOH . 
H 4 HOH A 66 666 100 HOH HOH . 
H 4 HOH A 67 667 11 HOH HOH . 
H 4 HOH A 68 668 83 HOH HOH . 
H 4 HOH A 69 669 113 HOH HOH . 
H 4 HOH A 70 670 78 HOH HOH . 
H 4 HOH A 71 671 128 HOH HOH . 
H 4 HOH A 72 672 68 HOH HOH . 
H 4 HOH A 73 673 82 HOH HOH . 
H 4 HOH A 74 674 114 HOH HOH . 
H 4 HOH A 75 675 27 HOH HOH . 
H 4 HOH A 76 676 56 HOH HOH . 
H 4 HOH A 77 677 58 HOH HOH . 
H 4 HOH A 78 678 55 HOH HOH . 
H 4 HOH A 79 679 76 HOH HOH . 
H 4 HOH A 80 680 61 HOH HOH . 
H 4 HOH A 81 681 101 HOH HOH . 
H 4 HOH A 82 682 117 HOH HOH . 
H 4 HOH A 83 683 120 HOH HOH . 
H 4 HOH A 84 684 95 HOH HOH . 
H 4 HOH A 85 685 88 HOH HOH . 
H 4 HOH A 86 686 90 HOH HOH . 
H 4 HOH A 87 687 54 HOH HOH . 
I 4 HOH B 1 601 65 HOH HOH . 
I 4 HOH B 2 602 130 HOH HOH . 
I 4 HOH B 3 603 7 HOH HOH . 
I 4 HOH B 4 604 48 HOH HOH . 
I 4 HOH B 5 605 124 HOH HOH . 
I 4 HOH B 6 606 72 HOH HOH . 
I 4 HOH B 7 607 129 HOH HOH . 
I 4 HOH B 8 608 31 HOH HOH . 
I 4 HOH B 9 609 102 HOH HOH . 
I 4 HOH B 10 610 97 HOH HOH . 
I 4 HOH B 11 611 2 HOH HOH . 
I 4 HOH B 12 612 26 HOH HOH . 
I 4 HOH B 13 613 41 HOH HOH . 
I 4 HOH B 14 614 46 HOH HOH . 
I 4 HOH B 15 615 30 HOH HOH . 
I 4 HOH B 16 616 6 HOH HOH . 
I 4 HOH B 17 617 5 HOH HOH . 
I 4 HOH B 18 618 104 HOH HOH . 
I 4 HOH B 19 619 40 HOH HOH . 
I 4 HOH B 20 620 38 HOH HOH . 
I 4 HOH B 21 621 86 HOH HOH . 
I 4 HOH B 22 622 80 HOH HOH . 
I 4 HOH B 23 623 32 HOH HOH . 
I 4 HOH B 24 624 77 HOH HOH . 
I 4 HOH B 25 625 34 HOH HOH . 
I 4 HOH B 26 626 111 HOH HOH . 
I 4 HOH B 27 627 70 HOH HOH . 
I 4 HOH B 28 628 71 HOH HOH . 
I 4 HOH B 29 629 49 HOH HOH . 
I 4 HOH B 30 630 28 HOH HOH . 
I 4 HOH B 31 631 74 HOH HOH . 
I 4 HOH B 32 632 69 HOH HOH . 
I 4 HOH B 33 633 93 HOH HOH . 
I 4 HOH B 34 634 25 HOH HOH . 
I 4 HOH B 35 635 73 HOH HOH . 
I 4 HOH B 36 636 39 HOH HOH . 
I 4 HOH B 37 637 116 HOH HOH . 
I 4 HOH B 38 638 10 HOH HOH . 
I 4 HOH B 39 639 119 HOH HOH . 
I 4 HOH B 40 640 106 HOH HOH . 
I 4 HOH B 41 641 105 HOH HOH . 
I 4 HOH B 42 642 75 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           CD 
_atom_site.label_atom_id         CD 
_atom_site.label_comp_id         CD 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         C 
_atom_site.label_entity_id       2 
_atom_site.Cartn_x               -2.379 
_atom_site.Cartn_y               2.971 
_atom_site.Cartn_z               27.18 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        74.44 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          CD 
_atom_site.auth_comp_id          CD 
_atom_site.auth_seq_id           501 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              20 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           296 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           1 
#