data_5YZI # _model_server_result.job_id TYdAbM8U1v2zCUvyDNJWCQ _model_server_result.datetime_utc '2024-11-05 00:41:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5yzi # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":501}' # _entry.id 5YZI # _exptl.entry_id 5YZI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 112.411 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CADMIUM ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 113.65 _cell.angle_gamma 90 _cell.entry_id 5YZI _cell.length_a 98.246 _cell.length_b 91.428 _cell.length_c 109.724 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5YZI _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N ? 2 F N N # _struct_conn.conn_type_id metalc _struct_conn.details ? _struct_conn.id metalc1 _struct_conn.ptnr1_label_asym_id B _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 245 _struct_conn.ptnr1_auth_asym_id B _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 245 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id F _struct_conn.ptnr2_label_atom_id CD _struct_conn.ptnr2_label_comp_id CD _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id B _struct_conn.ptnr2_auth_comp_id CD _struct_conn.ptnr2_auth_seq_id 502 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 3.036 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'Cd 2' _chem_comp.formula_weight 112.411 _chem_comp.id CD _chem_comp.mon_nstd_flag . _chem_comp.name 'CADMIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5YZI _atom_sites.fract_transf_matrix[1][1] 0.010179 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004457 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010938 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009949 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CD A 1 501 1 CD CD . D 3 NAP A 1 502 1 NAP NAP . E 2 CD B 1 501 2 CD CD . F 2 CD B 1 502 3 CD CD . G 3 NAP B 1 503 2 NAP NAP . H 4 HOH A 1 601 18 HOH HOH . H 4 HOH A 2 602 84 HOH HOH . H 4 HOH A 3 603 29 HOH HOH . H 4 HOH A 4 604 15 HOH HOH . H 4 HOH A 5 605 20 HOH HOH . H 4 HOH A 6 606 103 HOH HOH . H 4 HOH A 7 607 51 HOH HOH . H 4 HOH A 8 608 63 HOH HOH . H 4 HOH A 9 609 4 HOH HOH . H 4 HOH A 10 610 121 HOH HOH . H 4 HOH A 11 611 94 HOH HOH . H 4 HOH A 12 612 12 HOH HOH . H 4 HOH A 13 613 9 HOH HOH . H 4 HOH A 14 614 37 HOH HOH . H 4 HOH A 15 615 14 HOH HOH . H 4 HOH A 16 616 127 HOH HOH . H 4 HOH A 17 617 92 HOH HOH . H 4 HOH A 18 618 50 HOH HOH . H 4 HOH A 19 619 24 HOH HOH . H 4 HOH A 20 620 16 HOH HOH . H 4 HOH A 21 621 89 HOH HOH . H 4 HOH A 22 622 64 HOH HOH . H 4 HOH A 23 623 98 HOH HOH . H 4 HOH A 24 624 122 HOH HOH . H 4 HOH A 25 625 21 HOH HOH . H 4 HOH A 26 626 42 HOH HOH . H 4 HOH A 27 627 53 HOH HOH . H 4 HOH A 28 628 108 HOH HOH . H 4 HOH A 29 629 57 HOH HOH . H 4 HOH A 30 630 19 HOH HOH . H 4 HOH A 31 631 115 HOH HOH . H 4 HOH A 32 632 3 HOH HOH . H 4 HOH A 33 633 23 HOH HOH . H 4 HOH A 34 634 109 HOH HOH . H 4 HOH A 35 635 96 HOH HOH . H 4 HOH A 36 636 44 HOH HOH . H 4 HOH A 37 637 35 HOH HOH . H 4 HOH A 38 638 43 HOH HOH . H 4 HOH A 39 639 118 HOH HOH . H 4 HOH A 40 640 67 HOH HOH . H 4 HOH A 41 641 123 HOH HOH . H 4 HOH A 42 642 125 HOH HOH . H 4 HOH A 43 643 112 HOH HOH . H 4 HOH A 44 644 45 HOH HOH . H 4 HOH A 45 645 87 HOH HOH . H 4 HOH A 46 646 33 HOH HOH . H 4 HOH A 47 647 36 HOH HOH . H 4 HOH A 48 648 8 HOH HOH . H 4 HOH A 49 649 79 HOH HOH . H 4 HOH A 50 650 59 HOH HOH . H 4 HOH A 51 651 62 HOH HOH . H 4 HOH A 52 652 85 HOH HOH . H 4 HOH A 53 653 47 HOH HOH . H 4 HOH A 54 654 110 HOH HOH . H 4 HOH A 55 655 66 HOH HOH . H 4 HOH A 56 656 13 HOH HOH . H 4 HOH A 57 657 126 HOH HOH . H 4 HOH A 58 658 99 HOH HOH . H 4 HOH A 59 659 81 HOH HOH . H 4 HOH A 60 660 17 HOH HOH . H 4 HOH A 61 661 107 HOH HOH . H 4 HOH A 62 662 60 HOH HOH . H 4 HOH A 63 663 91 HOH HOH . H 4 HOH A 64 664 52 HOH HOH . H 4 HOH A 65 665 22 HOH HOH . H 4 HOH A 66 666 100 HOH HOH . H 4 HOH A 67 667 11 HOH HOH . H 4 HOH A 68 668 83 HOH HOH . H 4 HOH A 69 669 113 HOH HOH . H 4 HOH A 70 670 78 HOH HOH . H 4 HOH A 71 671 128 HOH HOH . H 4 HOH A 72 672 68 HOH HOH . H 4 HOH A 73 673 82 HOH HOH . H 4 HOH A 74 674 114 HOH HOH . H 4 HOH A 75 675 27 HOH HOH . H 4 HOH A 76 676 56 HOH HOH . H 4 HOH A 77 677 58 HOH HOH . H 4 HOH A 78 678 55 HOH HOH . H 4 HOH A 79 679 76 HOH HOH . H 4 HOH A 80 680 61 HOH HOH . H 4 HOH A 81 681 101 HOH HOH . H 4 HOH A 82 682 117 HOH HOH . H 4 HOH A 83 683 120 HOH HOH . H 4 HOH A 84 684 95 HOH HOH . H 4 HOH A 85 685 88 HOH HOH . H 4 HOH A 86 686 90 HOH HOH . H 4 HOH A 87 687 54 HOH HOH . I 4 HOH B 1 601 65 HOH HOH . I 4 HOH B 2 602 130 HOH HOH . I 4 HOH B 3 603 7 HOH HOH . I 4 HOH B 4 604 48 HOH HOH . I 4 HOH B 5 605 124 HOH HOH . I 4 HOH B 6 606 72 HOH HOH . I 4 HOH B 7 607 129 HOH HOH . I 4 HOH B 8 608 31 HOH HOH . I 4 HOH B 9 609 102 HOH HOH . I 4 HOH B 10 610 97 HOH HOH . I 4 HOH B 11 611 2 HOH HOH . I 4 HOH B 12 612 26 HOH HOH . I 4 HOH B 13 613 41 HOH HOH . I 4 HOH B 14 614 46 HOH HOH . I 4 HOH B 15 615 30 HOH HOH . I 4 HOH B 16 616 6 HOH HOH . I 4 HOH B 17 617 5 HOH HOH . I 4 HOH B 18 618 104 HOH HOH . I 4 HOH B 19 619 40 HOH HOH . I 4 HOH B 20 620 38 HOH HOH . I 4 HOH B 21 621 86 HOH HOH . I 4 HOH B 22 622 80 HOH HOH . I 4 HOH B 23 623 32 HOH HOH . I 4 HOH B 24 624 77 HOH HOH . I 4 HOH B 25 625 34 HOH HOH . I 4 HOH B 26 626 111 HOH HOH . I 4 HOH B 27 627 70 HOH HOH . I 4 HOH B 28 628 71 HOH HOH . I 4 HOH B 29 629 49 HOH HOH . I 4 HOH B 30 630 28 HOH HOH . I 4 HOH B 31 631 74 HOH HOH . I 4 HOH B 32 632 69 HOH HOH . I 4 HOH B 33 633 93 HOH HOH . I 4 HOH B 34 634 25 HOH HOH . I 4 HOH B 35 635 73 HOH HOH . I 4 HOH B 36 636 39 HOH HOH . I 4 HOH B 37 637 116 HOH HOH . I 4 HOH B 38 638 10 HOH HOH . I 4 HOH B 39 639 119 HOH HOH . I 4 HOH B 40 640 106 HOH HOH . I 4 HOH B 41 641 105 HOH HOH . I 4 HOH B 42 642 75 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CD _atom_site.label_atom_id CD _atom_site.label_comp_id CD _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 2 _atom_site.Cartn_x 17.35 _atom_site.Cartn_y -6.119 _atom_site.Cartn_z 21.54 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 150.97 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CD _atom_site.auth_comp_id CD _atom_site.auth_seq_id 501 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 315 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #