data_5YZX # _model_server_result.job_id GsO_uzvuyguN03qxqFzisA _model_server_result.datetime_utc '2024-11-12 20:51:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5yzx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"N","auth_seq_id":603}' # _entry.id 5YZX # _exptl.entry_id 5YZX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 9 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5YZX _cell.length_a 144.544 _cell.length_b 249.855 _cell.length_c 179.652 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5YZX _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,L,M,N,O 1 1 B,H,I,J,K 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_566 x,-y+1,-z+1 1 0 0 0 -1 0 0 0 -1 0 249.855 179.652 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N ? 3 G N N ? 3 I N N ? 3 J N N ? 3 K N N ? 3 M N N ? 3 N N N ? 3 O N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE2 GLU 285 A GLU 264 1_555 E CA CA . A CA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.354 ? metalc ? metalc2 A OE2 GLU 435 A GLU 414 1_555 F CA CA . A CA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.337 ? metalc ? metalc3 A OE1 GLU 435 A GLU 414 1_555 G CA CA . A CA 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.192 ? metalc ? metalc4 A OE1 GLU 442 A GLU 421 1_555 F CA CA . A CA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.967 ? metalc ? metalc5 A OE2 GLU 442 A GLU 421 1_555 F CA CA . A CA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.46 ? metalc ? metalc6 D O2A B4P . A B4P 601 1_555 E CA CA . A CA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.971 ? metalc ? metalc7 D O1B B4P . A B4P 601 1_555 E CA CA . A CA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.634 ? metalc ? metalc8 D O1G B4P . A B4P 601 1_555 E CA CA . A CA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.37 ? metalc ? metalc9 D O2G B4P . A B4P 601 1_555 F CA CA . A CA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.353 ? metalc ? metalc10 D O1D B4P . A B4P 601 1_555 F CA CA . A CA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.517 ? metalc ? metalc11 D O1A B4P . A B4P 601 1_555 G CA CA . A CA 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.776 ? metalc ? metalc12 B OE2 GLU 285 B GLU 264 1_555 I CA CA . B CA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.465 ? metalc ? metalc13 B OD2 ASP 397 B ASP 376 1_555 K CA CA . B CA 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.934 ? metalc ? metalc14 B OE2 GLU 435 B GLU 414 1_555 J CA CA . B CA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.279 ? metalc ? metalc15 B OE1 GLU 442 B GLU 421 1_555 J CA CA . B CA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.477 ? metalc ? metalc16 B OE2 GLU 442 B GLU 421 1_555 J CA CA . B CA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.776 ? metalc ? metalc17 H O2A B4P . B B4P 601 1_555 I CA CA . B CA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.082 ? metalc ? metalc18 H O1B B4P . B B4P 601 1_555 I CA CA . B CA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.731 ? metalc ? metalc19 H O1G B4P . B B4P 601 1_555 I CA CA . B CA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.285 ? metalc ? metalc20 H O2G B4P . B B4P 601 1_555 J CA CA . B CA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.445 ? metalc ? metalc21 H O1D B4P . B B4P 601 1_555 J CA CA . B CA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.306 ? metalc ? metalc22 H O1A B4P . B B4P 601 1_555 K CA CA . B CA 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.358 ? metalc ? metalc23 C OE2 GLU 285 C GLU 264 1_555 N CA CA . C CA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.804 ? metalc ? metalc24 C OE2 GLU 435 C GLU 414 1_555 O CA CA . C CA 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.227 ? metalc ? metalc25 C OE1 GLU 442 C GLU 421 1_555 O CA CA . C CA 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.598 ? metalc ? metalc26 C OE2 GLU 442 C GLU 421 1_555 O CA CA . C CA 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.575 ? metalc ? metalc27 L O1A B4P . C B4P 601 1_555 M CA CA . C CA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.665 ? metalc ? metalc28 L O1G B4P . C B4P 601 1_555 N CA CA . C CA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.32 ? metalc ? metalc29 L O2G B4P . C B4P 601 1_555 O CA CA . C CA 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.494 ? metalc ? metalc30 L O1D B4P . C B4P 601 1_555 O CA CA . C CA 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.242 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5YZX _atom_sites.fract_transf_matrix[1][1] 0.006918 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.004002 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005566 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 B4P A 1 601 1 B4P B4P . E 3 CA A 1 602 1 CA CA . F 3 CA A 1 603 2 CA CA . G 3 CA A 1 604 3 CA CA . H 2 B4P B 1 601 3 B4P B4P . I 3 CA B 1 602 7 CA CA . J 3 CA B 1 603 8 CA CA . K 3 CA B 1 604 9 CA CA . L 2 B4P C 1 601 2 B4P B4P . M 3 CA C 1 602 4 CA CA . N 3 CA C 1 603 5 CA CA . O 3 CA C 1 604 6 CA CA . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id N _atom_site.label_entity_id 3 _atom_site.Cartn_x 120.75 _atom_site.Cartn_y 59.147 _atom_site.Cartn_z 17.889 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 65.74 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 603 _atom_site.auth_asym_id C _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 30 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 284 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 1 #