data_5Z12
#
_model_server_result.job_id            o02-FvbH09RrC6GOF_pv3g 
_model_server_result.datetime_utc      '2024-11-13 10:35:49' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5z12 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"L","auth_seq_id":501}' 
#
_entry.id    5Z12 
#
_exptl.entry_id    5Z12 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              300.435 
_entity.id                          6 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            '(9cis)-retinoic acid' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5Z12 
_cell.length_a            89.873 
_cell.length_b            95.484 
_cell.length_c            116.721 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5Z12 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? tetrameric 4 author_defined_assembly 1 
? tetrameric 4 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,D,G,H,I,L,M,P 1 1 
B,C,E,F,J,K,N,O 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 6 J N N 
? 6 L N N 
#
_chem_comp.formula           'C20 H28 O2' 
_chem_comp.formula_weight    300.435 
_chem_comp.id                9CR 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(9cis)-retinoic acid' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O1 C15 9CR doub 60 n n 
C15 C14 9CR sing 61 n n 
C15 O2 9CR sing 62 n n 
C14 C13 9CR doub 63 e n 
C13 C12 9CR sing 64 n n 
C13 C20 9CR sing 65 n n 
C12 C11 9CR doub 66 e n 
C11 C10 9CR sing 67 n n 
C18 C5 9CR sing 68 n n 
C10 C9 9CR doub 69 z n 
C9 C19 9CR sing 70 n n 
C9 C8 9CR sing 71 n n 
C8 C7 9CR doub 72 e n 
C5 C4 9CR sing 73 n n 
C5 C6 9CR doub 74 n n 
C4 C3 9CR sing 75 n n 
C7 C6 9CR sing 76 n n 
C6 C1 9CR sing 77 n n 
C3 C2 9CR sing 78 n n 
C1 C17 9CR sing 79 n n 
C1 C2 9CR sing 80 n n 
C1 C16 9CR sing 81 n n 
C2 H1 9CR sing 82 n n 
C2 H2 9CR sing 83 n n 
C3 H3 9CR sing 84 n n 
C3 H4 9CR sing 85 n n 
C4 H5 9CR sing 86 n n 
C4 H6 9CR sing 87 n n 
C7 H7 9CR sing 88 n n 
C8 H8 9CR sing 89 n n 
C10 H9 9CR sing 90 n n 
C11 H10 9CR sing 91 n n 
C12 H11 9CR sing 92 n n 
C14 H12 9CR sing 93 n n 
C16 H13 9CR sing 94 n n 
C16 H14 9CR sing 95 n n 
C16 H15 9CR sing 96 n n 
C17 H16 9CR sing 97 n n 
C17 H17 9CR sing 98 n n 
C17 H18 9CR sing 99 n n 
C18 H19 9CR sing 100 n n 
C18 H20 9CR sing 101 n n 
C18 H21 9CR sing 102 n n 
C19 H22 9CR sing 103 n n 
C19 H23 9CR sing 104 n n 
C19 H24 9CR sing 105 n n 
C20 H25 9CR sing 106 n n 
C20 H26 9CR sing 107 n n 
C20 H27 9CR sing 108 n n 
O2 H28 9CR sing 109 n n 
#
_atom_sites.entry_id                     5Z12 
_atom_sites.fract_transf_matrix[1][1]    0.011127 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010473 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008567 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
I 5 33Y A 1 501 5 33Y 33Y . 
J 6 9CR C 1 501 1 9CR 9CR . 
K 5 33Y D 1 501 6 33Y 33Y . 
L 6 9CR B 1 501 2 9CR 9CR . 
M 7 HOH A 1 601 77 HOH HOH . 
M 7 HOH A 2 602 14 HOH HOH . 
M 7 HOH A 3 603 14 HOH HOH . 
M 7 HOH A 4 604 23 HOH HOH . 
M 7 HOH A 5 605 243 HOH HOH . 
M 7 HOH A 6 606 123 HOH HOH . 
M 7 HOH A 7 607 73 HOH HOH . 
M 7 HOH A 8 608 2 HOH HOH . 
M 7 HOH A 9 609 108 HOH HOH . 
M 7 HOH A 10 610 38 HOH HOH . 
M 7 HOH A 11 611 268 HOH HOH . 
M 7 HOH A 12 612 152 HOH HOH . 
M 7 HOH A 13 613 54 HOH HOH . 
M 7 HOH A 14 614 52 HOH HOH . 
M 7 HOH A 15 615 214 HOH HOH . 
M 7 HOH A 16 616 306 HOH HOH . 
M 7 HOH A 17 617 63 HOH HOH . 
M 7 HOH A 18 618 61 HOH HOH . 
M 7 HOH A 19 619 206 HOH HOH . 
M 7 HOH A 20 620 101 HOH HOH . 
N 7 HOH C 1 601 32 HOH HOH . 
N 7 HOH C 2 602 162 HOH HOH . 
N 7 HOH C 3 603 28 HOH HOH . 
N 7 HOH C 4 604 105 HOH HOH . 
N 7 HOH C 5 605 199 HOH HOH . 
N 7 HOH C 6 606 37 HOH HOH . 
N 7 HOH C 7 607 105 HOH HOH . 
N 7 HOH C 8 608 90 HOH HOH . 
N 7 HOH C 9 609 239 HOH HOH . 
N 7 HOH C 10 610 134 HOH HOH . 
N 7 HOH C 11 611 162 HOH HOH . 
N 7 HOH C 12 612 2 HOH HOH . 
N 7 HOH C 13 613 161 HOH HOH . 
N 7 HOH C 14 614 43 HOH HOH . 
N 7 HOH C 15 615 62 HOH HOH . 
N 7 HOH C 16 616 51 HOH HOH . 
N 7 HOH C 17 617 6 HOH HOH . 
N 7 HOH C 18 618 126 HOH HOH . 
O 7 HOH D 1 601 7 HOH HOH . 
O 7 HOH D 2 602 299 HOH HOH . 
O 7 HOH D 3 603 19 HOH HOH . 
O 7 HOH D 4 604 131 HOH HOH . 
O 7 HOH D 5 605 93 HOH HOH . 
O 7 HOH D 6 606 129 HOH HOH . 
O 7 HOH D 7 607 21 HOH HOH . 
O 7 HOH D 8 608 12 HOH HOH . 
O 7 HOH D 9 609 15 HOH HOH . 
O 7 HOH D 10 610 102 HOH HOH . 
O 7 HOH D 11 611 1 HOH HOH . 
O 7 HOH D 12 612 241 HOH HOH . 
O 7 HOH D 13 613 256 HOH HOH . 
O 7 HOH D 14 614 67 HOH HOH . 
P 7 HOH B 1 601 56 HOH HOH . 
P 7 HOH B 2 602 277 HOH HOH . 
P 7 HOH B 3 603 193 HOH HOH . 
P 7 HOH B 4 604 81 HOH HOH . 
P 7 HOH B 5 605 227 HOH HOH . 
P 7 HOH B 6 606 124 HOH HOH . 
P 7 HOH B 7 607 16 HOH HOH . 
P 7 HOH B 8 608 1 HOH HOH . 
P 7 HOH B 9 609 107 HOH HOH . 
P 7 HOH B 10 610 9 HOH HOH . 
P 7 HOH B 11 611 29 HOH HOH . 
P 7 HOH B 12 612 11 HOH HOH . 
P 7 HOH B 13 613 34 HOH HOH . 
P 7 HOH B 14 614 17 HOH HOH . 
P 7 HOH B 15 615 164 HOH HOH . 
P 7 HOH B 16 616 303 HOH HOH . 
P 7 HOH B 17 617 30 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 9CR . . . L 6 -34.437 7.492 -22.642 1 32.01 ? C1 9CR 501 B 1 
HETATM 2 C C2 9CR . . . L 6 -35.674 8.119 -21.993 1 33.64 ? C2 9CR 501 B 1 
HETATM 3 C C3 9CR . . . L 6 -36.062 9.485 -22.565 1 33.81 ? C3 9CR 501 B 1 
HETATM 4 C C4 9CR . . . L 6 -34.889 10.433 -22.787 1 33.52 ? C4 9CR 501 B 1 
HETATM 5 C C5 9CR . . . L 6 -33.586 9.804 -22.362 1 32.77 ? C5 9CR 501 B 1 
HETATM 6 C C6 9CR . . . L 6 -33.317 8.518 -22.644 1 31.72 ? C6 9CR 501 B 1 
HETATM 7 C C7 9CR . . . L 6 -31.939 8.242 -23.088 1 31.09 ? C7 9CR 501 B 1 
HETATM 8 C C8 9CR . . . L 6 -31.292 7.073 -23.212 1 30.33 ? C8 9CR 501 B 1 
HETATM 9 C C9 9CR . . . L 6 -29.879 7.147 -23.611 1 30.12 ? C9 9CR 501 B 1 
HETATM 10 C C10 9CR . . . L 6 -29.581 8.216 -24.359 1 28.67 ? C10 9CR 501 B 1 
HETATM 11 C C11 9CR . . . L 6 -28.322 8.599 -24.928 1 28.78 ? C11 9CR 501 B 1 
HETATM 12 C C12 9CR . . . L 6 -28.451 9.501 -25.929 1 28.78 ? C12 9CR 501 B 1 
HETATM 13 C C13 9CR . . . L 6 -27.335 10.085 -26.682 1 28.64 ? C13 9CR 501 B 1 
HETATM 14 C C14 9CR . . . L 6 -27.553 11.217 -27.369 1 28.29 ? C14 9CR 501 B 1 
HETATM 15 C C15 9CR . . . L 6 -26.495 11.934 -28.125 1 27.86 ? C15 9CR 501 B 1 
HETATM 16 C C16 9CR . . . L 6 -34.206 6.161 -21.95 1 32.37 ? C16 9CR 501 B 1 
HETATM 17 C C17 9CR . . . L 6 -34.708 7.199 -24.116 1 30.82 ? C17 9CR 501 B 1 
HETATM 18 C C18 9CR . . . L 6 -32.612 10.676 -21.616 1 33.9 ? C18 9CR 501 B 1 
HETATM 19 C C19 9CR . . . L 6 -28.876 6.159 -23.122 1 31.56 ? C19 9CR 501 B 1 
HETATM 20 C C20 9CR . . . L 6 -25.97 9.491 -26.593 1 29.28 ? C20 9CR 501 B 1 
HETATM 21 O O1 9CR . . . L 6 -26.818 12.891 -28.791 1 29.04 ? O1 9CR 501 B 1 
HETATM 22 O O2 9CR . . . L 6 -25.202 11.632 -28.1 1 26.02 ? O2 9CR 501 B 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    13 
_model_server_stats.query_time_ms           304 
_model_server_stats.encode_time_ms          12 
_model_server_stats.element_count           22 
#