data_5Z14 # _model_server_result.job_id kUCuMVPmNvwwkuDlDeNHcA _model_server_result.datetime_utc '2024-10-18 20:30:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5z14 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":911}' # _entry.id 5Z14 # _exptl.entry_id 5Z14 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 8 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 108.51 _cell.angle_gamma 90 _cell.entry_id 5Z14 _cell.length_a 143.51 _cell.length_b 99 _cell.length_c 139.49 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5Z14 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 8 J N N ? 8 K N N ? 8 M N N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 2 oligosaccharide 3 oligosaccharide 4 oligosaccharide 5 oligosaccharide 6 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 2 3 2 BMA NAG C1 O1 . O4 HO4 . sing 3 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing 4 ? 4 2 1 NAG NAG C1 O1 . O4 HO4 . sing 5 ? 4 3 2 BMA NAG C1 O1 . O4 HO4 . sing 6 ? 4 4 3 MAN BMA C1 O1 . O3 HO3 . sing 7 ? 4 5 3 MAN BMA C1 O1 . O6 HO6 . sing 8 ? 5 2 1 NAG NAG C1 O1 . O4 HO4 . sing 9 ? 5 3 2 MAN NAG C1 O1 . O4 HO4 . sing 10 ? 5 4 3 MAN MAN C1 O1 . O6 HO6 . sing 11 ? 6 2 1 NAG NAG C1 O1 . O4 HO4 . sing 12 ? 6 3 2 BMA NAG C1 O1 . O4 HO4 . sing 13 ? 6 4 3 MAN BMA C1 O1 . O6 HO6 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n C NAG 1 C 1 NAG A 902 NAG 2 n C NAG 2 C 2 NAG A 903 NAG 2 n C BMA 3 C 3 BMA A 904 BMA 3 n D NAG 1 D 1 NAG A 906 NAG 3 n D NAG 2 D 2 NAG A 907 NAG 4 n E NAG 1 E 1 NAG A 908 NAG 4 n E NAG 2 E 2 NAG A 909 NAG 4 n E BMA 3 E 3 BMA A 910 BMA 4 n E MAN 4 E 4 MAN A 912 MAN 4 n E MAN 5 E 5 MAN A 911 MAN 5 n F NAG 1 F 1 NAG B 901 NAG 5 n F NAG 2 F 2 NAG B 902 NAG 5 n F MAN 3 F 3 MAN B 903 MAN 5 n F MAN 4 F 4 MAN B 904 MAN 3 n G NAG 1 G 1 NAG B 905 NAG 3 n G NAG 2 G 2 NAG B 906 NAG 6 n H NAG 1 H 1 NAG B 907 NAG 6 n H NAG 2 H 2 NAG B 908 NAG 6 n H BMA 3 H 3 BMA B 909 BMA 6 n H MAN 4 H 4 MAN B 910 MAN # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 14 A CYS 36 1_555 A SG CYS 27 A CYS 49 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf2 A SG CYS 159 A CYS 181 1_555 A SG CYS 165 A CYS 187 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? disulf ? disulf3 A SG CYS 235 A CYS 257 1_555 A SG CYS 248 A CYS 270 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf4 A SG CYS 238 A CYS 260 1_555 A SG CYS 245 A CYS 267 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf5 A SG CYS 457 A CYS 479 1_555 A SG CYS 487 A CYS 509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? disulf ? disulf6 A SG CYS 754 A CYS 776 1_555 A SG CYS 781 A CYS 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf7 B SG CYS 14 B CYS 36 1_555 B SG CYS 27 B CYS 49 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf8 B SG CYS 159 B CYS 181 1_555 B SG CYS 165 B CYS 187 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf9 B SG CYS 235 B CYS 257 1_555 B SG CYS 248 B CYS 270 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf10 B SG CYS 238 B CYS 260 1_555 B SG CYS 245 B CYS 267 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf11 B SG CYS 457 B CYS 479 1_555 B SG CYS 487 B CYS 509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf12 B SG CYS 754 B CYS 776 1_555 B SG CYS 781 B CYS 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? covale ? covale1 A ND2 ASN 271 A ASN 293 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.451 ? covale ? covale2 A ND2 ASN 373 A ASN 395 1_555 J C1 NAG . A NAG 905 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.479 ? covale ? covale3 A ND2 ASN 489 A ASN 511 1_555 D C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.456 ? covale ? covale4 A ND2 ASN 568 A ASN 590 1_555 E C1 NAG . E NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? covale ? covale5 A ND2 ASN 618 A ASN 640 1_555 K C1 NAG . A NAG 913 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? covale ? covale6 B ND2 ASN 271 B ASN 293 1_555 F C1 NAG . F NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.456 ? covale ? covale7 B ND2 ASN 489 B ASN 511 1_555 G C1 NAG . G NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale8 B ND2 ASN 568 B ASN 590 1_555 H C1 NAG . H NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.454 ? covale ? covale9 B ND2 ASN 618 B ASN 640 1_555 M C1 NAG . B NAG 911 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.458 ? covale ? covale10 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.45 ? covale ? covale11 C O4 NAG . C NAG 2 1_555 C C1 BMA . C BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale12 D O4 NAG . D NAG 1 1_555 D C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? covale ? covale13 E O4 NAG . E NAG 1 1_555 E C1 NAG . E NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.423 ? covale ? covale14 E O4 NAG . E NAG 2 1_555 E C1 BMA . E BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.419 ? covale ? covale15 E O3 BMA . E BMA 3 1_555 E C1 MAN . E MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale16 E O6 BMA . E BMA 3 1_555 E C1 MAN . E MAN 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.45 ? covale ? covale17 F O4 NAG . F NAG 1 1_555 F C1 NAG . F NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale18 F O4 NAG . F NAG 2 1_555 F C1 MAN . F MAN 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale19 F O6 MAN . F MAN 3 1_555 F C1 MAN . F MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.461 ? covale ? covale20 G O4 NAG . G NAG 1 1_555 G C1 NAG . G NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.454 ? covale ? covale21 H O4 NAG . H NAG 1 1_555 H C1 NAG . H NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale22 H O4 NAG . H NAG 2 1_555 H C1 BMA . H BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.431 ? covale ? covale23 H O6 BMA . H BMA 3 1_555 H C1 MAN . H MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.457 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms ? # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 5Z14 _atom_sites.fract_transf_matrix[1][1] 0.006968 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002333 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010101 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00756 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 7 7VC A 1 901 901 7VC 7VC . J 8 NAG A 1 905 905 NAG NAG . K 8 NAG A 1 913 913 NAG NAG . L 7 7VC A 1 914 914 7VC 7VC . M 8 NAG B 1 911 911 NAG NAG . N 9 HOH A 1 1001 1001 HOH HOH . N 9 HOH A 2 1002 1002 HOH HOH . N 9 HOH A 3 1003 1003 HOH HOH . N 9 HOH A 4 1004 1004 HOH HOH . N 9 HOH A 5 1005 1005 HOH HOH . N 9 HOH A 6 1006 1006 HOH HOH . N 9 HOH A 7 1007 1007 HOH HOH . N 9 HOH A 8 1008 1008 HOH HOH . N 9 HOH A 9 1009 1009 HOH HOH . N 9 HOH A 10 1010 1010 HOH HOH . N 9 HOH A 11 1011 1011 HOH HOH . N 9 HOH A 12 1012 1012 HOH HOH . N 9 HOH A 13 1013 1013 HOH HOH . N 9 HOH A 14 1014 1014 HOH HOH . N 9 HOH A 15 1015 1015 HOH HOH . N 9 HOH A 16 1016 1016 HOH HOH . N 9 HOH A 17 1017 1017 HOH HOH . N 9 HOH A 18 1018 1018 HOH HOH . N 9 HOH A 19 1019 1019 HOH HOH . N 9 HOH A 20 1020 1020 HOH HOH . N 9 HOH A 21 1021 1021 HOH HOH . N 9 HOH A 22 1022 1022 HOH HOH . N 9 HOH A 23 1023 1023 HOH HOH . N 9 HOH A 24 1024 1024 HOH HOH . N 9 HOH A 25 1025 1025 HOH HOH . N 9 HOH A 26 1026 1026 HOH HOH . N 9 HOH A 27 1027 1027 HOH HOH . N 9 HOH A 28 1028 1028 HOH HOH . O 9 HOH B 1 1001 1001 HOH HOH . O 9 HOH B 2 1002 1002 HOH HOH . O 9 HOH B 3 1003 1003 HOH HOH . O 9 HOH B 4 1004 1004 HOH HOH . O 9 HOH B 5 1005 1005 HOH HOH . O 9 HOH B 6 1006 1006 HOH HOH . O 9 HOH B 7 1007 1007 HOH HOH . O 9 HOH B 8 1008 1008 HOH HOH . O 9 HOH B 9 1009 1009 HOH HOH . O 9 HOH B 10 1010 1010 HOH HOH . O 9 HOH B 11 1011 1011 HOH HOH . O 9 HOH B 12 1012 1012 HOH HOH . O 9 HOH B 13 1013 1013 HOH HOH . O 9 HOH B 14 1014 1014 HOH HOH . O 9 HOH B 15 1015 1015 HOH HOH . O 9 HOH B 16 1016 1016 HOH HOH . O 9 HOH B 17 1017 1017 HOH HOH . O 9 HOH B 18 1018 1018 HOH HOH . O 9 HOH B 19 1019 1019 HOH HOH . O 9 HOH B 20 1020 1020 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . M 8 -42.055 -0.368 0.473 1 75.31 ? C1 NAG 911 B 1 HETATM 2 C C2 NAG . . . M 8 -43.41 -0.619 1.13 1 80.76 ? C2 NAG 911 B 1 HETATM 3 C C3 NAG . . . M 8 -43.249 -1.394 2.434 1 82.07 ? C3 NAG 911 B 1 HETATM 4 C C4 NAG . . . M 8 -42.424 -2.667 2.214 1 91.55 ? C4 NAG 911 B 1 HETATM 5 C C5 NAG . . . M 8 -41.163 -2.376 1.362 1 89.73 ? C5 NAG 911 B 1 HETATM 6 C C6 NAG . . . M 8 -40.467 -3.663 0.912 1 93.67 ? C6 NAG 911 B 1 HETATM 7 C C7 NAG . . . M 8 -45.199 1.062 1.212 1 93.36 ? C7 NAG 911 B 1 HETATM 8 C C8 NAG . . . M 8 -45.545 2.479 1.572 1 92.38 ? C8 NAG 911 B 1 HETATM 9 N N2 NAG . . . M 8 -43.936 0.698 1.427 1 91.44 ? N2 NAG 911 B 1 HETATM 10 O O3 NAG . . . M 8 -44.489 -1.712 3.044 1 72 ? O3 NAG 911 B 1 HETATM 11 O O4 NAG . . . M 8 -42.11 -3.274 3.476 1 87.45 ? O4 NAG 911 B 1 HETATM 12 O O5 NAG . . . M 8 -41.452 -1.604 0.204 1 76.52 ? O5 NAG 911 B 1 HETATM 13 O O6 NAG . . . M 8 -41.308 -4.369 0.024 1 90.6 ? O6 NAG 911 B 1 HETATM 14 O O7 NAG . . . M 8 -46.058 0.307 0.754 1 92.88 ? O7 NAG 911 B 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 291 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 14 #