data_5Z1N # _model_server_result.job_id Qu156gmq3JLtDcXlaCo6NA _model_server_result.datetime_utc '2024-11-18 03:25:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5z1n # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 5Z1N # _exptl.entry_id 5Z1N _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 691.959 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description DI-PALMITOYL-3-SN-PHOSPHATIDYLETHANOLAMINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5Z1N _cell.length_a 33.318 _cell.length_b 44.143 _cell.length_c 96.637 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5Z1N _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O ASP 61 A ASP 203 1_555 D NA NA . A NA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.367 ? metalc ? metalc2 D NA NA . A NA 403 1_555 E O HOH . A HOH 534 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.71 ? # _chem_comp.formula 'C37 H74 N O8 P' _chem_comp.formula_weight 691.959 _chem_comp.id PEF _chem_comp.mon_nstd_flag . _chem_comp.name DI-PALMITOYL-3-SN-PHOSPHATIDYLETHANOLAMINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 3-[AMINOETHYLPHOSPHORYL]-[1,2-DI-PALMITOYL]-SN-GLYCEROL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C2 C1 PEF sing 347 n n C2 C3 PEF sing 348 n n C2 O2 PEF sing 349 n n C2 H21 PEF sing 350 n n C1 O3P PEF sing 351 n n C1 H11 PEF sing 352 n n C1 H12 PEF sing 353 n n N C5 PEF sing 354 n n N HN1 PEF sing 355 n n N HN2 PEF sing 356 n n C3 O3 PEF sing 357 n n C3 H31 PEF sing 358 n n C3 H32 PEF sing 359 n n C4 C5 PEF sing 360 n n C4 O4P PEF sing 361 n n C4 H41 PEF sing 362 n n C4 H42 PEF sing 363 n n C5 H51 PEF sing 364 n n C5 H52 PEF sing 365 n n C10 C11 PEF sing 366 n n C10 O4 PEF doub 367 n n C10 O2 PEF sing 368 n n C11 C12 PEF sing 369 n n C11 H112 PEF sing 370 n n C11 H111 PEF sing 371 n n C12 C13 PEF sing 372 n n C12 H122 PEF sing 373 n n C12 H121 PEF sing 374 n n C13 C14 PEF sing 375 n n C13 H132 PEF sing 376 n n C13 H131 PEF sing 377 n n C14 C15 PEF sing 378 n n C14 H142 PEF sing 379 n n C14 H141 PEF sing 380 n n C15 C16 PEF sing 381 n n C15 H152 PEF sing 382 n n C15 H151 PEF sing 383 n n C16 C17 PEF sing 384 n n C16 H162 PEF sing 385 n n C16 H161 PEF sing 386 n n C17 C18 PEF sing 387 n n C17 H172 PEF sing 388 n n C17 H171 PEF sing 389 n n C18 C19 PEF sing 390 n n C18 H182 PEF sing 391 n n C18 H181 PEF sing 392 n n C19 C20 PEF sing 393 n n C19 H192 PEF sing 394 n n C19 H191 PEF sing 395 n n C20 C21 PEF sing 396 n n C20 H202 PEF sing 397 n n C20 H201 PEF sing 398 n n C21 C22 PEF sing 399 n n C21 H212 PEF sing 400 n n C21 H211 PEF sing 401 n n C22 C23 PEF sing 402 n n C22 H222 PEF sing 403 n n C22 H221 PEF sing 404 n n C23 C24 PEF sing 405 n n C23 H232 PEF sing 406 n n C23 H231 PEF sing 407 n n C24 C25 PEF sing 408 n n C24 H242 PEF sing 409 n n C24 H241 PEF sing 410 n n C25 H252 PEF sing 411 n n C25 H251 PEF sing 412 n n C25 H253 PEF sing 413 n n C30 C31 PEF sing 414 n n C30 O5 PEF doub 415 n n C30 O3 PEF sing 416 n n C31 C32 PEF sing 417 n n C31 H312 PEF sing 418 n n C31 H311 PEF sing 419 n n C32 C33 PEF sing 420 n n C32 H322 PEF sing 421 n n C32 H321 PEF sing 422 n n C33 C34 PEF sing 423 n n C33 H332 PEF sing 424 n n C33 H331 PEF sing 425 n n C34 C35 PEF sing 426 n n C34 H342 PEF sing 427 n n C34 H341 PEF sing 428 n n C35 C36 PEF sing 429 n n C35 H352 PEF sing 430 n n C35 H351 PEF sing 431 n n C36 C37 PEF sing 432 n n C36 H362 PEF sing 433 n n C36 H361 PEF sing 434 n n C37 C38 PEF sing 435 n n C37 H372 PEF sing 436 n n C37 H371 PEF sing 437 n n C38 C39 PEF sing 438 n n C38 H382 PEF sing 439 n n C38 H381 PEF sing 440 n n C39 C40 PEF sing 441 n n C39 H392 PEF sing 442 n n C39 H391 PEF sing 443 n n C40 C41 PEF sing 444 n n C40 H402 PEF sing 445 n n C40 H401 PEF sing 446 n n C41 C42 PEF sing 447 n n C41 H412 PEF sing 448 n n C41 H411 PEF sing 449 n n C42 C43 PEF sing 450 n n C42 H422 PEF sing 451 n n C42 H421 PEF sing 452 n n C43 C44 PEF sing 453 n n C43 H432 PEF sing 454 n n C43 H431 PEF sing 455 n n C44 C45 PEF sing 456 n n C44 H442 PEF sing 457 n n C44 H441 PEF sing 458 n n C45 H452 PEF sing 459 n n C45 H451 PEF sing 460 n n C45 H453 PEF sing 461 n n O1P P PEF doub 462 n n O2P P PEF sing 463 n n O2P HOP2 PEF sing 464 n n O3P P PEF sing 465 n n O4P P PEF sing 466 n n # _atom_sites.entry_id 5Z1N _atom_sites.fract_transf_matrix[1][1] 0.030014 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.022654 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010348 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PEF A 1 401 1 PEF PEF . C 3 LHG A 1 402 2 LHG LHG . D 4 NA A 1 403 1 NA NA . E 5 HOH A 1 501 29 HOH HOH . E 5 HOH A 2 502 86 HOH HOH . E 5 HOH A 3 503 110 HOH HOH . E 5 HOH A 4 504 102 HOH HOH . E 5 HOH A 5 505 103 HOH HOH . E 5 HOH A 6 506 99 HOH HOH . E 5 HOH A 7 507 9 HOH HOH . E 5 HOH A 8 508 45 HOH HOH . E 5 HOH A 9 509 50 HOH HOH . E 5 HOH A 10 510 80 HOH HOH . E 5 HOH A 11 511 105 HOH HOH . E 5 HOH A 12 512 108 HOH HOH . E 5 HOH A 13 513 28 HOH HOH . E 5 HOH A 14 514 25 HOH HOH . E 5 HOH A 15 515 76 HOH HOH . E 5 HOH A 16 516 92 HOH HOH . E 5 HOH A 17 517 100 HOH HOH . E 5 HOH A 18 518 46 HOH HOH . E 5 HOH A 19 519 94 HOH HOH . E 5 HOH A 20 520 85 HOH HOH . E 5 HOH A 21 521 71 HOH HOH . E 5 HOH A 22 522 30 HOH HOH . E 5 HOH A 23 523 52 HOH HOH . E 5 HOH A 24 524 63 HOH HOH . E 5 HOH A 25 525 1 HOH HOH . E 5 HOH A 26 526 83 HOH HOH . E 5 HOH A 27 527 24 HOH HOH . E 5 HOH A 28 528 72 HOH HOH . E 5 HOH A 29 529 21 HOH HOH . E 5 HOH A 30 530 13 HOH HOH . E 5 HOH A 31 531 66 HOH HOH . E 5 HOH A 32 532 22 HOH HOH . E 5 HOH A 33 533 81 HOH HOH . E 5 HOH A 34 534 20 HOH HOH . E 5 HOH A 35 535 16 HOH HOH . E 5 HOH A 36 536 6 HOH HOH . E 5 HOH A 37 537 34 HOH HOH . E 5 HOH A 38 538 41 HOH HOH . E 5 HOH A 39 539 36 HOH HOH . E 5 HOH A 40 540 17 HOH HOH . E 5 HOH A 41 541 74 HOH HOH . E 5 HOH A 42 542 59 HOH HOH . E 5 HOH A 43 543 11 HOH HOH . E 5 HOH A 44 544 57 HOH HOH . E 5 HOH A 45 545 7 HOH HOH . E 5 HOH A 46 546 60 HOH HOH . E 5 HOH A 47 547 32 HOH HOH . E 5 HOH A 48 548 33 HOH HOH . E 5 HOH A 49 549 47 HOH HOH . E 5 HOH A 50 550 18 HOH HOH . E 5 HOH A 51 551 79 HOH HOH . E 5 HOH A 52 552 73 HOH HOH . E 5 HOH A 53 553 4 HOH HOH . E 5 HOH A 54 554 65 HOH HOH . E 5 HOH A 55 555 109 HOH HOH . E 5 HOH A 56 556 43 HOH HOH . E 5 HOH A 57 557 58 HOH HOH . E 5 HOH A 58 558 48 HOH HOH . E 5 HOH A 59 559 37 HOH HOH . E 5 HOH A 60 560 62 HOH HOH . E 5 HOH A 61 561 40 HOH HOH . E 5 HOH A 62 562 67 HOH HOH . E 5 HOH A 63 563 98 HOH HOH . E 5 HOH A 64 564 8 HOH HOH . E 5 HOH A 65 565 23 HOH HOH . E 5 HOH A 66 566 26 HOH HOH . E 5 HOH A 67 567 44 HOH HOH . E 5 HOH A 68 568 53 HOH HOH . E 5 HOH A 69 569 31 HOH HOH . E 5 HOH A 70 570 51 HOH HOH . E 5 HOH A 71 571 27 HOH HOH . E 5 HOH A 72 572 14 HOH HOH . E 5 HOH A 73 573 5 HOH HOH . E 5 HOH A 74 574 19 HOH HOH . E 5 HOH A 75 575 2 HOH HOH . E 5 HOH A 76 576 87 HOH HOH . E 5 HOH A 77 577 77 HOH HOH . E 5 HOH A 78 578 42 HOH HOH . E 5 HOH A 79 579 3 HOH HOH . E 5 HOH A 80 580 70 HOH HOH . E 5 HOH A 81 581 54 HOH HOH . E 5 HOH A 82 582 93 HOH HOH . E 5 HOH A 83 583 15 HOH HOH . E 5 HOH A 84 584 64 HOH HOH . E 5 HOH A 85 585 49 HOH HOH . E 5 HOH A 86 586 12 HOH HOH . E 5 HOH A 87 587 35 HOH HOH . E 5 HOH A 88 588 55 HOH HOH . E 5 HOH A 89 589 82 HOH HOH . E 5 HOH A 90 590 38 HOH HOH . E 5 HOH A 91 591 68 HOH HOH . E 5 HOH A 92 592 88 HOH HOH . E 5 HOH A 93 593 56 HOH HOH . E 5 HOH A 94 594 84 HOH HOH . E 5 HOH A 95 595 97 HOH HOH . E 5 HOH A 96 596 78 HOH HOH . E 5 HOH A 97 597 10 HOH HOH . E 5 HOH A 98 598 75 HOH HOH . E 5 HOH A 99 599 96 HOH HOH . E 5 HOH A 100 600 101 HOH HOH . E 5 HOH A 101 601 39 HOH HOH . E 5 HOH A 102 602 106 HOH HOH . E 5 HOH A 103 603 61 HOH HOH . E 5 HOH A 104 604 107 HOH HOH . E 5 HOH A 105 605 90 HOH HOH . E 5 HOH A 106 606 69 HOH HOH . E 5 HOH A 107 607 95 HOH HOH . E 5 HOH A 108 608 91 HOH HOH . E 5 HOH A 109 609 104 HOH HOH . E 5 HOH A 110 610 89 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C2 PEF . A . B 2 37.049 41.242 118.292 1 24.15 ? C2 PEF 401 A 1 HETATM 2 C C1 PEF . A . B 2 35.783 41.039 119.115 1 24.3 ? C1 PEF 401 A 1 HETATM 3 N N PEF . A . B 2 32.872 35.981 120.202 0.5 29.33 ? N PEF 401 A 1 HETATM 4 C C3 PEF . A . B 2 37.804 39.937 118.096 1 13.45 ? C3 PEF 401 A 1 HETATM 5 C C4 PEF . A . B 2 32.845 38.4 120.129 0.5 36.42 ? C4 PEF 401 A 1 HETATM 6 C C5 PEF . A . B 2 32.073 37.146 120.516 0.5 35.46 ? C5 PEF 401 A 1 HETATM 7 C C10 PEF . A . B 2 37.548 42.74 116.501 1 22.4 ? C10 PEF 401 A 1 HETATM 8 C C11 PEF . A . B 2 37.132 43.534 115.288 1 29.38 ? C11 PEF 401 A 1 HETATM 9 C C12 PEF . A . B 2 38.185 43.49 114.186 1 23 ? C12 PEF 401 A 1 HETATM 10 C C13 PEF . A . B 2 37.552 44.03 112.908 1 20.54 ? C13 PEF 401 A 1 HETATM 11 C C14 PEF . A . B 2 38.538 44.194 111.757 1 21.61 ? C14 PEF 401 A 1 HETATM 12 C C15 PEF . A . B 2 37.753 44.388 110.462 1 27.43 ? C15 PEF 401 A 1 HETATM 13 C C16 PEF . A . B 2 38.661 44.679 109.276 1 35.38 ? C16 PEF 401 A 1 HETATM 14 C C17 PEF . A . B 2 37.929 44.482 107.951 1 32.13 ? C17 PEF 401 A 1 HETATM 15 C C18 PEF . A . B 2 36.547 45.127 107.955 1 30.61 ? C18 PEF 401 A 1 HETATM 16 C C19 PEF . A . B 2 36.214 45.735 106.596 1 35.19 ? C19 PEF 401 A 1 HETATM 17 C C20 PEF . A . B 2 36.443 44.754 105.45 1 20.72 ? C20 PEF 401 A 1 HETATM 18 C C21 PEF . A . B 2 37.299 45.393 104.363 1 21.44 ? C21 PEF 401 A 1 HETATM 19 C C22 PEF . A . B 2 37.651 44.393 103.268 1 20.19 ? C22 PEF 401 A 1 HETATM 20 C C23 PEF . A . B 2 38.801 44.905 102.406 1 14.73 ? C23 PEF 401 A 1 HETATM 21 C C24 PEF . A . B 2 39.066 43.961 101.24 1 14.44 ? C24 PEF 401 A 1 HETATM 22 C C25 PEF . A . B 2 40.311 44.361 100.48 1 20.26 ? C25 PEF 401 A 1 HETATM 23 C C30 PEF . A . B 2 37.591 39.174 115.752 1 27.79 ? C30 PEF 401 A 1 HETATM 24 C C31 PEF . A . B 2 36.89 38.362 114.69 1 27.61 ? C31 PEF 401 A 1 HETATM 25 C C32 PEF . A . B 2 36.026 39.273 113.826 1 25.24 ? C32 PEF 401 A 1 HETATM 26 C C33 PEF . A . B 2 34.815 39.786 114.595 1 29.79 ? C33 PEF 401 A 1 HETATM 27 C C34 PEF . A . B 2 34.358 41.132 114.045 1 39.05 ? C34 PEF 401 A 1 HETATM 28 C C35 PEF . A . B 2 33.031 41.561 114.663 1 40.18 ? C35 PEF 401 A 1 HETATM 29 C C36 PEF . A . B 2 32.859 43.075 114.608 1 51.35 ? C36 PEF 401 A 1 HETATM 30 C C37 PEF . A . B 2 31.401 43.49 114.777 1 40.4 ? C37 PEF 401 A 1 HETATM 31 C C38 PEF . A . B 2 31.28 45.006 114.908 1 37.89 ? C38 PEF 401 A 1 HETATM 32 C C39 PEF . A . B 2 30.286 45.577 113.902 1 42.95 ? C39 PEF 401 A 1 HETATM 33 C C40 PEF . A . B 2 30.125 47.087 114.052 1 35.7 ? C40 PEF 401 A 1 HETATM 34 C C41 PEF . A . B 2 31.439 47.829 113.831 1 41.06 ? C41 PEF 401 A 1 HETATM 35 C C42 PEF . A . B 2 31.971 47.648 112.412 1 31.45 ? C42 PEF 401 A 1 HETATM 36 C C43 PEF . A . B 2 33.171 48.555 112.167 1 17.8 ? C43 PEF 401 A 1 HETATM 37 C C44 PEF . A . B 2 33.744 48.363 110.769 1 33.59 ? C44 PEF 401 A 1 HETATM 38 C C45 PEF . A . B 2 34.783 49.422 110.467 1 23.97 ? C45 PEF 401 A 1 HETATM 39 O O4 PEF . A . B 2 38.611 42.939 117.061 1 14.21 ? O4 PEF 401 A 1 HETATM 40 O O5 PEF . A . B 2 38.564 39.858 115.477 1 28.09 ? O5 PEF 401 A 1 HETATM 41 O O2 PEF . A . B 2 36.656 41.715 117.011 1 20 ? O2 PEF 401 A 1 HETATM 42 O O3 PEF . A . B 2 37.103 39.174 117.119 1 29.6 ? O3 PEF 401 A 1 HETATM 43 O O1P PEF . A . B 2 35.567 39.393 122.476 1 16.64 ? O1P PEF 401 A 1 HETATM 44 O O2P PEF . A . B 2 33.787 40.737 121.081 1 18.79 ? O2P PEF 401 A 1 HETATM 45 O O3P PEF . A . B 2 35.954 39.956 120.02 1 22.49 ? O3P PEF 401 A 1 HETATM 46 O O4P PEF . A . B 2 34.178 38.331 120.633 1 28.97 ? O4P PEF 401 A 1 HETATM 47 P P PEF . A . B 2 34.859 39.681 121.169 1 19.14 ? P PEF 401 A 1 # _model_server_stats.io_time_ms 66 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 302 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 47 #