data_5Z1N
#
_model_server_result.job_id            g_d2PL8GzdP5PGyNvjTURg 
_model_server_result.datetime_utc      '2024-11-18 03:48:11' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5z1n 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":402}' 
#
_entry.id    5Z1N 
#
_exptl.entry_id    5Z1N 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              722.97 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5Z1N 
_cell.length_a            33.318 
_cell.length_b            44.143 
_cell.length_c            96.637 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5Z1N 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A O ASP 61 A ASP 203 1_555 D NA NA . A NA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.367 ? 
metalc ? metalc2 D NA NA . A NA 403 1_555 E O HOH . A HOH 534 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.71 ? 
#
_chem_comp.formula           'C38 H75 O10 P' 
_chem_comp.formula_weight    722.97 
_chem_comp.id                LHG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O1 C1 LHG sing 181 n n 
O1 HO1 LHG sing 182 n n 
C1 C2 LHG sing 183 n n 
C1 HC11 LHG sing 184 n n 
C1 HC12 LHG sing 185 n n 
C2 O2 LHG sing 186 n n 
C2 C3 LHG sing 187 n n 
C2 HC2 LHG sing 188 n n 
O2 H02 LHG sing 189 n n 
C3 O3 LHG sing 190 n n 
C3 HC31 LHG sing 191 n n 
C3 HC32 LHG sing 192 n n 
O3 P LHG sing 193 n n 
P O4 LHG sing 194 n n 
P O5 LHG doub 195 n n 
P O6 LHG sing 196 n n 
O4 HO4 LHG sing 197 n n 
O6 C4 LHG sing 198 n n 
C4 C5 LHG sing 199 n n 
C4 HC41 LHG sing 200 n n 
C4 HC42 LHG sing 201 n n 
C5 C6 LHG sing 202 n n 
C5 O7 LHG sing 203 n n 
C5 HC5 LHG sing 204 n n 
C6 O8 LHG sing 205 n n 
C6 HC61 LHG sing 206 n n 
C6 HC62 LHG sing 207 n n 
O7 C7 LHG sing 208 n n 
C7 O9 LHG doub 209 n n 
C7 C8 LHG sing 210 n n 
C8 C9 LHG sing 211 n n 
C8 HC81 LHG sing 212 n n 
C8 HC82 LHG sing 213 n n 
C9 C10 LHG sing 214 n n 
C9 HC91 LHG sing 215 n n 
C9 HC92 LHG sing 216 n n 
C10 C11 LHG sing 217 n n 
C10 H101 LHG sing 218 n n 
C10 H102 LHG sing 219 n n 
O8 C23 LHG sing 220 n n 
C23 O10 LHG doub 221 n n 
C23 C24 LHG sing 222 n n 
C24 C25 LHG sing 223 n n 
C24 H241 LHG sing 224 n n 
C24 H242 LHG sing 225 n n 
C11 C12 LHG sing 226 n n 
C11 H111 LHG sing 227 n n 
C11 H112 LHG sing 228 n n 
C12 C13 LHG sing 229 n n 
C12 H121 LHG sing 230 n n 
C12 H122 LHG sing 231 n n 
C13 C14 LHG sing 232 n n 
C13 H131 LHG sing 233 n n 
C13 H132 LHG sing 234 n n 
C14 C15 LHG sing 235 n n 
C14 H141 LHG sing 236 n n 
C14 H142 LHG sing 237 n n 
C15 C16 LHG sing 238 n n 
C15 H151 LHG sing 239 n n 
C15 H152 LHG sing 240 n n 
C16 C17 LHG sing 241 n n 
C16 H161 LHG sing 242 n n 
C16 H162 LHG sing 243 n n 
C17 C18 LHG sing 244 n n 
C17 H171 LHG sing 245 n n 
C17 H172 LHG sing 246 n n 
C18 C19 LHG sing 247 n n 
C18 H181 LHG sing 248 n n 
C18 H182 LHG sing 249 n n 
C19 C20 LHG sing 250 n n 
C19 H191 LHG sing 251 n n 
C19 H192 LHG sing 252 n n 
C20 C21 LHG sing 253 n n 
C20 H201 LHG sing 254 n n 
C20 H202 LHG sing 255 n n 
C21 C22 LHG sing 256 n n 
C21 H211 LHG sing 257 n n 
C21 H212 LHG sing 258 n n 
C22 H221 LHG sing 259 n n 
C22 H222 LHG sing 260 n n 
C22 H223 LHG sing 261 n n 
C25 C26 LHG sing 262 n n 
C25 H251 LHG sing 263 n n 
C25 H252 LHG sing 264 n n 
C26 C27 LHG sing 265 n n 
C26 H261 LHG sing 266 n n 
C26 H262 LHG sing 267 n n 
C27 C28 LHG sing 268 n n 
C27 H271 LHG sing 269 n n 
C27 H272 LHG sing 270 n n 
C28 C29 LHG sing 271 n n 
C28 H281 LHG sing 272 n n 
C28 H282 LHG sing 273 n n 
C29 C30 LHG sing 274 n n 
C29 H291 LHG sing 275 n n 
C29 H292 LHG sing 276 n n 
C30 C31 LHG sing 277 n n 
C30 H301 LHG sing 278 n n 
C30 H302 LHG sing 279 n n 
C31 C32 LHG sing 280 n n 
C31 H311 LHG sing 281 n n 
C31 H312 LHG sing 282 n n 
C32 C33 LHG sing 283 n n 
C32 H321 LHG sing 284 n n 
C32 H322 LHG sing 285 n n 
C33 C34 LHG sing 286 n n 
C33 H331 LHG sing 287 n n 
C33 H332 LHG sing 288 n n 
C34 C35 LHG sing 289 n n 
C34 H341 LHG sing 290 n n 
C34 H342 LHG sing 291 n n 
C35 C36 LHG sing 292 n n 
C35 H351 LHG sing 293 n n 
C35 H352 LHG sing 294 n n 
C36 C37 LHG sing 295 n n 
C36 H361 LHG sing 296 n n 
C36 H362 LHG sing 297 n n 
C37 C38 LHG sing 298 n n 
C37 H371 LHG sing 299 n n 
C37 H372 LHG sing 300 n n 
C38 H381 LHG sing 301 n n 
C38 H382 LHG sing 302 n n 
C38 H383 LHG sing 303 n n 
#
_atom_sites.entry_id                     5Z1N 
_atom_sites.fract_transf_matrix[1][1]    0.030014 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.022654 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010348 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 PEF A 1 401 1 PEF PEF . 
C 3 LHG A 1 402 2 LHG LHG . 
D 4 NA A 1 403 1 NA NA . 
E 5 HOH A 1 501 29 HOH HOH . 
E 5 HOH A 2 502 86 HOH HOH . 
E 5 HOH A 3 503 110 HOH HOH . 
E 5 HOH A 4 504 102 HOH HOH . 
E 5 HOH A 5 505 103 HOH HOH . 
E 5 HOH A 6 506 99 HOH HOH . 
E 5 HOH A 7 507 9 HOH HOH . 
E 5 HOH A 8 508 45 HOH HOH . 
E 5 HOH A 9 509 50 HOH HOH . 
E 5 HOH A 10 510 80 HOH HOH . 
E 5 HOH A 11 511 105 HOH HOH . 
E 5 HOH A 12 512 108 HOH HOH . 
E 5 HOH A 13 513 28 HOH HOH . 
E 5 HOH A 14 514 25 HOH HOH . 
E 5 HOH A 15 515 76 HOH HOH . 
E 5 HOH A 16 516 92 HOH HOH . 
E 5 HOH A 17 517 100 HOH HOH . 
E 5 HOH A 18 518 46 HOH HOH . 
E 5 HOH A 19 519 94 HOH HOH . 
E 5 HOH A 20 520 85 HOH HOH . 
E 5 HOH A 21 521 71 HOH HOH . 
E 5 HOH A 22 522 30 HOH HOH . 
E 5 HOH A 23 523 52 HOH HOH . 
E 5 HOH A 24 524 63 HOH HOH . 
E 5 HOH A 25 525 1 HOH HOH . 
E 5 HOH A 26 526 83 HOH HOH . 
E 5 HOH A 27 527 24 HOH HOH . 
E 5 HOH A 28 528 72 HOH HOH . 
E 5 HOH A 29 529 21 HOH HOH . 
E 5 HOH A 30 530 13 HOH HOH . 
E 5 HOH A 31 531 66 HOH HOH . 
E 5 HOH A 32 532 22 HOH HOH . 
E 5 HOH A 33 533 81 HOH HOH . 
E 5 HOH A 34 534 20 HOH HOH . 
E 5 HOH A 35 535 16 HOH HOH . 
E 5 HOH A 36 536 6 HOH HOH . 
E 5 HOH A 37 537 34 HOH HOH . 
E 5 HOH A 38 538 41 HOH HOH . 
E 5 HOH A 39 539 36 HOH HOH . 
E 5 HOH A 40 540 17 HOH HOH . 
E 5 HOH A 41 541 74 HOH HOH . 
E 5 HOH A 42 542 59 HOH HOH . 
E 5 HOH A 43 543 11 HOH HOH . 
E 5 HOH A 44 544 57 HOH HOH . 
E 5 HOH A 45 545 7 HOH HOH . 
E 5 HOH A 46 546 60 HOH HOH . 
E 5 HOH A 47 547 32 HOH HOH . 
E 5 HOH A 48 548 33 HOH HOH . 
E 5 HOH A 49 549 47 HOH HOH . 
E 5 HOH A 50 550 18 HOH HOH . 
E 5 HOH A 51 551 79 HOH HOH . 
E 5 HOH A 52 552 73 HOH HOH . 
E 5 HOH A 53 553 4 HOH HOH . 
E 5 HOH A 54 554 65 HOH HOH . 
E 5 HOH A 55 555 109 HOH HOH . 
E 5 HOH A 56 556 43 HOH HOH . 
E 5 HOH A 57 557 58 HOH HOH . 
E 5 HOH A 58 558 48 HOH HOH . 
E 5 HOH A 59 559 37 HOH HOH . 
E 5 HOH A 60 560 62 HOH HOH . 
E 5 HOH A 61 561 40 HOH HOH . 
E 5 HOH A 62 562 67 HOH HOH . 
E 5 HOH A 63 563 98 HOH HOH . 
E 5 HOH A 64 564 8 HOH HOH . 
E 5 HOH A 65 565 23 HOH HOH . 
E 5 HOH A 66 566 26 HOH HOH . 
E 5 HOH A 67 567 44 HOH HOH . 
E 5 HOH A 68 568 53 HOH HOH . 
E 5 HOH A 69 569 31 HOH HOH . 
E 5 HOH A 70 570 51 HOH HOH . 
E 5 HOH A 71 571 27 HOH HOH . 
E 5 HOH A 72 572 14 HOH HOH . 
E 5 HOH A 73 573 5 HOH HOH . 
E 5 HOH A 74 574 19 HOH HOH . 
E 5 HOH A 75 575 2 HOH HOH . 
E 5 HOH A 76 576 87 HOH HOH . 
E 5 HOH A 77 577 77 HOH HOH . 
E 5 HOH A 78 578 42 HOH HOH . 
E 5 HOH A 79 579 3 HOH HOH . 
E 5 HOH A 80 580 70 HOH HOH . 
E 5 HOH A 81 581 54 HOH HOH . 
E 5 HOH A 82 582 93 HOH HOH . 
E 5 HOH A 83 583 15 HOH HOH . 
E 5 HOH A 84 584 64 HOH HOH . 
E 5 HOH A 85 585 49 HOH HOH . 
E 5 HOH A 86 586 12 HOH HOH . 
E 5 HOH A 87 587 35 HOH HOH . 
E 5 HOH A 88 588 55 HOH HOH . 
E 5 HOH A 89 589 82 HOH HOH . 
E 5 HOH A 90 590 38 HOH HOH . 
E 5 HOH A 91 591 68 HOH HOH . 
E 5 HOH A 92 592 88 HOH HOH . 
E 5 HOH A 93 593 56 HOH HOH . 
E 5 HOH A 94 594 84 HOH HOH . 
E 5 HOH A 95 595 97 HOH HOH . 
E 5 HOH A 96 596 78 HOH HOH . 
E 5 HOH A 97 597 10 HOH HOH . 
E 5 HOH A 98 598 75 HOH HOH . 
E 5 HOH A 99 599 96 HOH HOH . 
E 5 HOH A 100 600 101 HOH HOH . 
E 5 HOH A 101 601 39 HOH HOH . 
E 5 HOH A 102 602 106 HOH HOH . 
E 5 HOH A 103 603 61 HOH HOH . 
E 5 HOH A 104 604 107 HOH HOH . 
E 5 HOH A 105 605 90 HOH HOH . 
E 5 HOH A 106 606 69 HOH HOH . 
E 5 HOH A 107 607 95 HOH HOH . 
E 5 HOH A 108 608 91 HOH HOH . 
E 5 HOH A 109 609 104 HOH HOH . 
E 5 HOH A 110 610 89 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O1 LHG . B . C 3 30.865 38.457 121.373 0.5 25.33 ? O1 LHG 402 A 1 
HETATM 2 C C1 LHG . B . C 3 31.581 37.229 121.201 0.5 33.03 ? C1 LHG 402 A 1 
HETATM 3 C C2 LHG . B . C 3 32.232 37.193 119.823 0.5 35.21 ? C2 LHG 402 A 1 
HETATM 4 O O2 LHG . B . C 3 33.013 36.001 119.695 0.5 30.93 ? O2 LHG 402 A 1 
HETATM 5 C C3 LHG . B . C 3 33.143 38.401 119.657 0.5 34.49 ? C3 LHG 402 A 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           267 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           5 
#