data_5Z1T # _model_server_result.job_id MRTU-XoMyFJ70PnL6bP3nw _model_server_result.datetime_utc '2024-10-19 03:55:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5z1t # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":207}' # _entry.id 5Z1T # _exptl.entry_id 5Z1T _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5Z1T _cell.length_a 35.1 _cell.length_b 47.06 _cell.length_c 78.09 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5Z1T _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 G N N ? 5 H N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 184 n n C1 C2 GOL sing 185 n n C1 H11 GOL sing 186 n n C1 H12 GOL sing 187 n n O1 HO1 GOL sing 188 n n C2 O2 GOL sing 189 n n C2 C3 GOL sing 190 n n C2 H2 GOL sing 191 n n O2 HO2 GOL sing 192 n n C3 O3 GOL sing 193 n n C3 H31 GOL sing 194 n n C3 H32 GOL sing 195 n n O3 HO3 GOL sing 196 n n # _atom_sites.entry_id 5Z1T _atom_sites.fract_transf_matrix[1][1] 0.02849 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.02125 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012806 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EFN A 1 201 1 EFN E0N . C 3 NO3 A 1 202 1 NO3 NO3 . D 3 NO3 A 1 203 2 NO3 NO3 . E 4 EDO A 1 204 1 EDO EDO . F 4 EDO A 1 205 2 EDO EDO . G 5 GOL A 1 206 1 GOL GOL . H 5 GOL A 1 207 2 GOL GOL . I 6 HOH A 1 301 55 HOH HOH . I 6 HOH A 2 302 24 HOH HOH . I 6 HOH A 3 303 52 HOH HOH . I 6 HOH A 4 304 38 HOH HOH . I 6 HOH A 5 305 73 HOH HOH . I 6 HOH A 6 306 26 HOH HOH . I 6 HOH A 7 307 66 HOH HOH . I 6 HOH A 8 308 3 HOH HOH . I 6 HOH A 9 309 57 HOH HOH . I 6 HOH A 10 310 58 HOH HOH . I 6 HOH A 11 311 44 HOH HOH . I 6 HOH A 12 312 39 HOH HOH . I 6 HOH A 13 313 35 HOH HOH . I 6 HOH A 14 314 48 HOH HOH . I 6 HOH A 15 315 9 HOH HOH . I 6 HOH A 16 316 60 HOH HOH . I 6 HOH A 17 317 33 HOH HOH . I 6 HOH A 18 318 2 HOH HOH . I 6 HOH A 19 319 18 HOH HOH . I 6 HOH A 20 320 54 HOH HOH . I 6 HOH A 21 321 10 HOH HOH . I 6 HOH A 22 322 53 HOH HOH . I 6 HOH A 23 323 21 HOH HOH . I 6 HOH A 24 324 5 HOH HOH . I 6 HOH A 25 325 20 HOH HOH . I 6 HOH A 26 326 30 HOH HOH . I 6 HOH A 27 327 25 HOH HOH . I 6 HOH A 28 328 42 HOH HOH . I 6 HOH A 29 329 22 HOH HOH . I 6 HOH A 30 330 40 HOH HOH . I 6 HOH A 31 331 70 HOH HOH . I 6 HOH A 32 332 6 HOH HOH . I 6 HOH A 33 333 72 HOH HOH . I 6 HOH A 34 334 8 HOH HOH . I 6 HOH A 35 335 14 HOH HOH . I 6 HOH A 36 336 67 HOH HOH . I 6 HOH A 37 337 23 HOH HOH . I 6 HOH A 38 338 29 HOH HOH . I 6 HOH A 39 339 59 HOH HOH . I 6 HOH A 40 340 17 HOH HOH . I 6 HOH A 41 341 49 HOH HOH . I 6 HOH A 42 342 1 HOH HOH . I 6 HOH A 43 343 46 HOH HOH . I 6 HOH A 44 344 50 HOH HOH . I 6 HOH A 45 345 37 HOH HOH . I 6 HOH A 46 346 19 HOH HOH . I 6 HOH A 47 347 36 HOH HOH . I 6 HOH A 48 348 28 HOH HOH . I 6 HOH A 49 349 64 HOH HOH . I 6 HOH A 50 350 32 HOH HOH . I 6 HOH A 51 351 16 HOH HOH . I 6 HOH A 52 352 62 HOH HOH . I 6 HOH A 53 353 13 HOH HOH . I 6 HOH A 54 354 11 HOH HOH . I 6 HOH A 55 355 31 HOH HOH . I 6 HOH A 56 356 65 HOH HOH . I 6 HOH A 57 357 4 HOH HOH . I 6 HOH A 58 358 7 HOH HOH . I 6 HOH A 59 359 27 HOH HOH . I 6 HOH A 60 360 15 HOH HOH . I 6 HOH A 61 361 63 HOH HOH . I 6 HOH A 62 362 43 HOH HOH . I 6 HOH A 63 363 69 HOH HOH . I 6 HOH A 64 364 68 HOH HOH . I 6 HOH A 65 365 51 HOH HOH . I 6 HOH A 66 366 41 HOH HOH . I 6 HOH A 67 367 47 HOH HOH . I 6 HOH A 68 368 34 HOH HOH . I 6 HOH A 69 369 45 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . H 5 -28.98 0.164 0.031 1 40.21 ? C1 GOL 207 A 1 HETATM 2 O O1 GOL . . . H 5 -29.243 1.291 -0.802 1 44.38 ? O1 GOL 207 A 1 HETATM 3 C C2 GOL . . . H 5 -28.34 0.616 1.335 1 40.08 ? C2 GOL 207 A 1 HETATM 4 O O2 GOL . . . H 5 -29.2 1.542 2.01 1 37.12 ? O2 GOL 207 A 1 HETATM 5 C C3 GOL . . . H 5 -28.082 -0.577 2.25 1 39.31 ? C3 GOL 207 A 1 HETATM 6 O O3 GOL . . . H 5 -28.213 -0.217 3.648 1 40.18 ? O3 GOL 207 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 336 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #