data_5Z21
#
_model_server_result.job_id            d9njwgqIGXRB5kPe2l61jA 
_model_server_result.datetime_utc      '2024-11-17 12:25:09' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5z21 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":401}' 
#
_entry.id    5Z21 
#
_exptl.entry_id    5Z21 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              665.441 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5Z21 
_cell.length_a            117.23 
_cell.length_b            159.74 
_cell.length_c            90 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5Z21 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 G N N 
? 2 I N N 
? 2 K N N 
#
_chem_comp.formula           'C21 H29 N7 O14 P2' 
_chem_comp.formula_weight    665.441 
_chem_comp.id                NAI 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     NADH 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NAI doub 237 n n 
PA O2A NAI sing 238 n n 
PA O5B NAI sing 239 n n 
PA O3 NAI sing 240 n n 
O2A HOA2 NAI sing 241 n n 
O5B C5B NAI sing 242 n n 
C5B C4B NAI sing 243 n n 
C5B H51A NAI sing 244 n n 
C5B H52A NAI sing 245 n n 
C4B O4B NAI sing 246 n n 
C4B C3B NAI sing 247 n n 
C4B H4B NAI sing 248 n n 
O4B C1B NAI sing 249 n n 
C3B O3B NAI sing 250 n n 
C3B C2B NAI sing 251 n n 
C3B H3B NAI sing 252 n n 
O3B HO3A NAI sing 253 n n 
C2B O2B NAI sing 254 n n 
C2B C1B NAI sing 255 n n 
C2B H2B NAI sing 256 n n 
O2B HO2A NAI sing 257 n n 
C1B N9A NAI sing 258 n n 
C1B H1B NAI sing 259 n n 
N9A C8A NAI sing 260 n y 
N9A C4A NAI sing 261 n y 
C8A N7A NAI doub 262 n y 
C8A H8A NAI sing 263 n n 
N7A C5A NAI sing 264 n y 
C5A C6A NAI sing 265 n y 
C5A C4A NAI doub 266 n y 
C6A N6A NAI sing 267 n n 
C6A N1A NAI doub 268 n y 
N6A H61A NAI sing 269 n n 
N6A H62A NAI sing 270 n n 
N1A C2A NAI sing 271 n y 
C2A N3A NAI doub 272 n y 
C2A H2A NAI sing 273 n n 
N3A C4A NAI sing 274 n y 
O3 PN NAI sing 275 n n 
PN O1N NAI sing 276 n n 
PN O2N NAI doub 277 n n 
PN O5D NAI sing 278 n n 
O1N HO1N NAI sing 279 n n 
O5D C5D NAI sing 280 n n 
C5D C4D NAI sing 281 n n 
C5D H51N NAI sing 282 n n 
C5D H52N NAI sing 283 n n 
C4D O4D NAI sing 284 n n 
C4D C3D NAI sing 285 n n 
C4D H4D NAI sing 286 n n 
O4D C1D NAI sing 287 n n 
C3D O3D NAI sing 288 n n 
C3D C2D NAI sing 289 n n 
C3D H3D NAI sing 290 n n 
O3D HO3N NAI sing 291 n n 
C2D O2D NAI sing 292 n n 
C2D C1D NAI sing 293 n n 
C2D H2D NAI sing 294 n n 
O2D HO2N NAI sing 295 n n 
C1D N1N NAI sing 296 n n 
C1D H1D NAI sing 297 n n 
N1N C2N NAI sing 298 n n 
N1N C6N NAI sing 299 n n 
C2N C3N NAI doub 300 n n 
C2N H2N NAI sing 301 n n 
C3N C7N NAI sing 302 n n 
C3N C4N NAI sing 303 n n 
C7N O7N NAI doub 304 n n 
C7N N7N NAI sing 305 n n 
N7N H71N NAI sing 306 n n 
N7N H72N NAI sing 307 n n 
C4N C5N NAI sing 308 n n 
C4N H4N NAI sing 309 n n 
C4N H42N NAI sing 310 n n 
C5N C6N NAI doub 311 n n 
C5N H5N NAI sing 312 n n 
C6N H6N NAI sing 313 n n 
#
_atom_sites.entry_id                     5Z21 
_atom_sites.fract_transf_matrix[1][1]    0.00853 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.00626 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011111 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 NAI A 1 401 401 NAI NAD . 
F 3 OXM A 1 402 402 OXM OXM . 
G 2 NAI B 1 401 401 NAI NAD . 
H 3 OXM B 1 402 402 OXM OXM . 
I 2 NAI C 1 401 401 NAI NAD . 
J 3 OXM C 1 402 402 OXM OXM . 
K 2 NAI D 1 401 401 NAI NAD . 
L 3 OXM D 1 402 402 OXM OXM . 
M 4 HOH A 1 501 5 HOH HOH . 
M 4 HOH A 2 502 28 HOH HOH . 
M 4 HOH A 3 503 63 HOH HOH . 
M 4 HOH A 4 504 65 HOH HOH . 
M 4 HOH A 5 505 68 HOH HOH . 
M 4 HOH A 6 506 45 HOH HOH . 
M 4 HOH A 7 507 25 HOH HOH . 
M 4 HOH A 8 508 10 HOH HOH . 
M 4 HOH A 9 509 90 HOH HOH . 
M 4 HOH A 10 510 95 HOH HOH . 
M 4 HOH A 11 511 7 HOH HOH . 
M 4 HOH A 12 512 46 HOH HOH . 
M 4 HOH A 13 513 21 HOH HOH . 
M 4 HOH A 14 514 91 HOH HOH . 
M 4 HOH A 15 515 64 HOH HOH . 
M 4 HOH A 16 516 72 HOH HOH . 
M 4 HOH A 17 517 1 HOH HOH . 
M 4 HOH A 18 518 15 HOH HOH . 
M 4 HOH A 19 519 6 HOH HOH . 
M 4 HOH A 20 520 53 HOH HOH . 
M 4 HOH A 21 521 17 HOH HOH . 
M 4 HOH A 22 522 12 HOH HOH . 
M 4 HOH A 23 523 62 HOH HOH . 
N 4 HOH B 1 501 76 HOH HOH . 
N 4 HOH B 2 502 39 HOH HOH . 
N 4 HOH B 3 503 58 HOH HOH . 
N 4 HOH B 4 504 36 HOH HOH . 
N 4 HOH B 5 505 77 HOH HOH . 
N 4 HOH B 6 506 74 HOH HOH . 
N 4 HOH B 7 507 96 HOH HOH . 
N 4 HOH B 8 508 67 HOH HOH . 
N 4 HOH B 9 509 85 HOH HOH . 
N 4 HOH B 10 510 47 HOH HOH . 
N 4 HOH B 11 511 70 HOH HOH . 
N 4 HOH B 12 512 8 HOH HOH . 
N 4 HOH B 13 513 11 HOH HOH . 
N 4 HOH B 14 514 92 HOH HOH . 
N 4 HOH B 15 515 26 HOH HOH . 
N 4 HOH B 16 516 50 HOH HOH . 
N 4 HOH B 17 517 4 HOH HOH . 
N 4 HOH B 18 518 71 HOH HOH . 
N 4 HOH B 19 519 98 HOH HOH . 
N 4 HOH B 20 520 33 HOH HOH . 
N 4 HOH B 21 521 20 HOH HOH . 
O 4 HOH C 1 501 41 HOH HOH . 
O 4 HOH C 2 502 94 HOH HOH . 
O 4 HOH C 3 503 2 HOH HOH . 
O 4 HOH C 4 504 52 HOH HOH . 
O 4 HOH C 5 505 24 HOH HOH . 
O 4 HOH C 6 506 3 HOH HOH . 
O 4 HOH C 7 507 57 HOH HOH . 
O 4 HOH C 8 508 31 HOH HOH . 
O 4 HOH C 9 509 34 HOH HOH . 
O 4 HOH C 10 510 69 HOH HOH . 
O 4 HOH C 11 511 75 HOH HOH . 
O 4 HOH C 12 512 32 HOH HOH . 
O 4 HOH C 13 513 23 HOH HOH . 
O 4 HOH C 14 514 60 HOH HOH . 
O 4 HOH C 15 515 40 HOH HOH . 
O 4 HOH C 16 516 81 HOH HOH . 
O 4 HOH C 17 517 13 HOH HOH . 
O 4 HOH C 18 518 35 HOH HOH . 
O 4 HOH C 19 519 56 HOH HOH . 
O 4 HOH C 20 520 89 HOH HOH . 
O 4 HOH C 21 521 38 HOH HOH . 
O 4 HOH C 22 522 49 HOH HOH . 
O 4 HOH C 23 523 84 HOH HOH . 
O 4 HOH C 24 524 88 HOH HOH . 
P 4 HOH D 1 501 19 HOH HOH . 
P 4 HOH D 2 502 80 HOH HOH . 
P 4 HOH D 3 503 97 HOH HOH . 
P 4 HOH D 4 504 83 HOH HOH . 
P 4 HOH D 5 505 66 HOH HOH . 
P 4 HOH D 6 506 86 HOH HOH . 
P 4 HOH D 7 507 55 HOH HOH . 
P 4 HOH D 8 508 16 HOH HOH . 
P 4 HOH D 9 509 48 HOH HOH . 
P 4 HOH D 10 510 18 HOH HOH . 
P 4 HOH D 11 511 93 HOH HOH . 
P 4 HOH D 12 512 61 HOH HOH . 
P 4 HOH D 13 513 87 HOH HOH . 
P 4 HOH D 14 514 54 HOH HOH . 
P 4 HOH D 15 515 9 HOH HOH . 
P 4 HOH D 16 516 78 HOH HOH . 
P 4 HOH D 17 517 73 HOH HOH . 
P 4 HOH D 18 518 82 HOH HOH . 
P 4 HOH D 19 519 44 HOH HOH . 
P 4 HOH D 20 520 79 HOH HOH . 
P 4 HOH D 21 521 51 HOH HOH . 
P 4 HOH D 22 522 42 HOH HOH . 
P 4 HOH D 23 523 37 HOH HOH . 
P 4 HOH D 24 524 22 HOH HOH . 
P 4 HOH D 25 525 14 HOH HOH . 
P 4 HOH D 26 526 30 HOH HOH . 
P 4 HOH D 27 527 59 HOH HOH . 
P 4 HOH D 28 528 27 HOH HOH . 
P 4 HOH D 29 529 43 HOH HOH . 
P 4 HOH D 30 530 29 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NAI . . . G 2 24.095 66.385 91.927 1 28.47 ? PA NAI 401 B 1 
HETATM 2 O O1A NAI . . . G 2 25.01 67.224 90.998 1 27.42 ? O1A NAI 401 B 1 
HETATM 3 O O2A NAI . . . G 2 23.019 66.963 92.753 1 28.36 ? O2A NAI 401 B 1 
HETATM 4 O O5B NAI . . . G 2 24.75 65.459 93.048 1 29.81 ? O5B NAI 401 B 1 
HETATM 5 C C5B NAI . . . G 2 25.795 64.537 92.733 1 31.25 ? C5B NAI 401 B 1 
HETATM 6 C C4B NAI . . . G 2 26.616 64.273 93.983 1 33.89 ? C4B NAI 401 B 1 
HETATM 7 O O4B NAI . . . G 2 27.754 63.5 93.629 1 35.54 ? O4B NAI 401 B 1 
HETATM 8 C C3B NAI . . . G 2 27.154 65.556 94.625 1 34.92 ? C3B NAI 401 B 1 
HETATM 9 O O3B NAI . . . G 2 26.622 65.641 95.926 1 35.01 ? O3B NAI 401 B 1 
HETATM 10 C C2B NAI . . . G 2 28.657 65.426 94.669 1 36.73 ? C2B NAI 401 B 1 
HETATM 11 O O2B NAI . . . G 2 29.258 65.744 95.933 1 37.75 ? O2B NAI 401 B 1 
HETATM 12 C C1B NAI . . . G 2 28.853 63.96 94.387 1 37.51 ? C1B NAI 401 B 1 
HETATM 13 N N9A NAI . . . G 2 30.109 63.674 93.646 1 41.07 ? N9A NAI 401 B 1 
HETATM 14 C C8A NAI . . . G 2 30.674 64.381 92.636 1 40.9 ? C8A NAI 401 B 1 
HETATM 15 N N7A NAI . . . G 2 31.804 63.767 92.23 1 39.1 ? N7A NAI 401 B 1 
HETATM 16 C C5A NAI . . . G 2 31.964 62.673 93.002 1 38.71 ? C5A NAI 401 B 1 
HETATM 17 C C6A NAI . . . G 2 32.972 61.589 93.098 1 39.4 ? C6A NAI 401 B 1 
HETATM 18 N N6A NAI . . . G 2 34.054 61.589 92.266 1 39.87 ? N6A NAI 401 B 1 
HETATM 19 N N1A NAI . . . G 2 32.755 60.637 94.052 1 41.65 ? N1A NAI 401 B 1 
HETATM 20 C C2A NAI . . . G 2 31.656 60.647 94.884 1 40.58 ? C2A NAI 401 B 1 
HETATM 21 N N3A NAI . . . G 2 30.718 61.613 94.832 1 38.01 ? N3A NAI 401 B 1 
HETATM 22 C C4A NAI . . . G 2 30.844 62.615 93.932 1 37.98 ? C4A NAI 401 B 1 
HETATM 23 O O3 NAI . . . G 2 23.595 65.242 90.903 1 29.54 ? O3 NAI 401 B 1 
HETATM 24 P PN NAI . . . G 2 22.148 64.524 90.889 1 29.86 ? PN NAI 401 B 1 
HETATM 25 O O1N NAI . . . G 2 21.157 65.495 90.309 1 27.97 ? O1N NAI 401 B 1 
HETATM 26 O O2N NAI . . . G 2 21.846 63.853 92.233 1 30.24 ? O2N NAI 401 B 1 
HETATM 27 O O5D NAI . . . G 2 22.541 63.525 89.714 1 30.06 ? O5D NAI 401 B 1 
HETATM 28 C C5D NAI . . . G 2 23.369 62.394 89.884 1 30.94 ? C5D NAI 401 B 1 
HETATM 29 C C4D NAI . . . G 2 23.616 61.806 88.481 1 30.74 ? C4D NAI 401 B 1 
HETATM 30 O O4D NAI . . . G 2 22.525 60.933 88.079 1 30.67 ? O4D NAI 401 B 1 
HETATM 31 C C3D NAI . . . G 2 23.772 62.853 87.374 1 29.89 ? C3D NAI 401 B 1 
HETATM 32 O O3D NAI . . . G 2 25.134 63.254 87.287 1 31.34 ? O3D NAI 401 B 1 
HETATM 33 C C2D NAI . . . G 2 23.364 62.056 86.169 1 29.79 ? C2D NAI 401 B 1 
HETATM 34 O O2D NAI . . . G 2 24.496 61.354 85.714 1 29.15 ? O2D NAI 401 B 1 
HETATM 35 C C1D NAI . . . G 2 22.461 60.929 86.641 1 29.41 ? C1D NAI 401 B 1 
HETATM 36 N N1N NAI . . . G 2 21.056 61.041 86.263 1 28.83 ? N1N NAI 401 B 1 
HETATM 37 C C2N NAI . . . G 2 20.463 59.966 85.681 1 27.82 ? C2N NAI 401 B 1 
HETATM 38 C C3N NAI . . . G 2 19.123 59.982 85.328 1 26.91 ? C3N NAI 401 B 1 
HETATM 39 C C7N NAI . . . G 2 18.462 58.824 84.635 1 26.78 ? C7N NAI 401 B 1 
HETATM 40 O O7N NAI . . . G 2 17.441 59.056 83.958 1 26.07 ? O7N NAI 401 B 1 
HETATM 41 N N7N NAI . . . G 2 18.98 57.589 84.75 1 26.45 ? N7N NAI 401 B 1 
HETATM 42 C C4N NAI . . . G 2 18.391 61.126 85.61 1 27.66 ? C4N NAI 401 B 1 
HETATM 43 C C5N NAI . . . G 2 18.998 62.203 86.259 1 28.63 ? C5N NAI 401 B 1 
HETATM 44 C C6N NAI . . . G 2 20.365 62.142 86.573 1 28.74 ? C6N NAI 401 B 1 
#
_model_server_stats.io_time_ms              84 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    23 
_model_server_stats.query_time_ms           288 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           44 
#