data_5Z2E # _model_server_result.job_id tw2n2q17M2tz5aaFE7PO9g _model_server_result.datetime_utc '2025-07-31 18:36:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5z2e # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 5Z2E # _exptl.entry_id 5Z2E _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 167.119 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PYRIDINE-2,6-DICARBOXYLIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5Z2E _cell.length_a 105.855 _cell.length_b 105.855 _cell.length_c 101.472 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5Z2E _symmetry.cell_setting ? _symmetry.Int_Tables_number 181 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 64 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_655 -x+1,-y,z -1 0 0 0 -1 0 0 0 1 105.855 0 0 3 'crystal symmetry operation' 8_555 x-y,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 4 'crystal symmetry operation' 11_655 -x+y+1,y,-z -1 0 0 0 1 0 0 0 -1 105.855 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C7 H5 N O4' _chem_comp.formula_weight 167.119 _chem_comp.id PDC _chem_comp.mon_nstd_flag . _chem_comp.name 'PYRIDINE-2,6-DICARBOXYLIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'DIPICOLINIC ACID' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 PDC doub 237 n y N1 C6 PDC sing 238 n y C2 C3 PDC sing 239 n y C2 C7 PDC sing 240 n n C3 C4 PDC doub 241 n y C3 H3 PDC sing 242 n n C4 C5 PDC sing 243 n y C4 H4 PDC sing 244 n n C5 C6 PDC doub 245 n y C5 H5 PDC sing 246 n n C6 C8 PDC sing 247 n n C7 O1 PDC doub 248 n n C7 O2 PDC sing 249 n n O2 HO2 PDC sing 250 n n C8 O3 PDC doub 251 n n C8 O4 PDC sing 252 n n O4 HO4 PDC sing 253 n n # _atom_sites.entry_id 5Z2E _atom_sites.fract_transf_matrix[1][1] 0.009447 _atom_sites.fract_transf_matrix[1][2] 0.005454 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010908 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009855 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PDC A 1 301 1 PDC PDC . C 3 HOH A 1 401 275 HOH HOH . C 3 HOH A 2 402 216 HOH HOH . C 3 HOH A 3 403 53 HOH HOH . C 3 HOH A 4 404 17 HOH HOH . C 3 HOH A 5 405 79 HOH HOH . C 3 HOH A 6 406 167 HOH HOH . C 3 HOH A 7 407 265 HOH HOH . C 3 HOH A 8 408 273 HOH HOH . C 3 HOH A 9 409 81 HOH HOH . C 3 HOH A 10 410 179 HOH HOH . C 3 HOH A 11 411 232 HOH HOH . C 3 HOH A 12 412 41 HOH HOH . C 3 HOH A 13 413 126 HOH HOH . C 3 HOH A 14 414 219 HOH HOH . C 3 HOH A 15 415 112 HOH HOH . C 3 HOH A 16 416 157 HOH HOH . C 3 HOH A 17 417 285 HOH HOH . C 3 HOH A 18 418 258 HOH HOH . C 3 HOH A 19 419 142 HOH HOH . C 3 HOH A 20 420 51 HOH HOH . C 3 HOH A 21 421 152 HOH HOH . C 3 HOH A 22 422 190 HOH HOH . C 3 HOH A 23 423 82 HOH HOH . C 3 HOH A 24 424 1 HOH HOH . C 3 HOH A 25 425 174 HOH HOH . C 3 HOH A 26 426 147 HOH HOH . C 3 HOH A 27 427 168 HOH HOH . C 3 HOH A 28 428 251 HOH HOH . C 3 HOH A 29 429 289 HOH HOH . C 3 HOH A 30 430 40 HOH HOH . C 3 HOH A 31 431 5 HOH HOH . C 3 HOH A 32 432 205 HOH HOH . C 3 HOH A 33 433 177 HOH HOH . C 3 HOH A 34 434 97 HOH HOH . C 3 HOH A 35 435 26 HOH HOH . C 3 HOH A 36 436 35 HOH HOH . C 3 HOH A 37 437 138 HOH HOH . C 3 HOH A 38 438 56 HOH HOH . C 3 HOH A 39 439 43 HOH HOH . C 3 HOH A 40 440 59 HOH HOH . C 3 HOH A 41 441 145 HOH HOH . C 3 HOH A 42 442 186 HOH HOH . C 3 HOH A 43 443 155 HOH HOH . C 3 HOH A 44 444 49 HOH HOH . C 3 HOH A 45 445 194 HOH HOH . C 3 HOH A 46 446 151 HOH HOH . C 3 HOH A 47 447 148 HOH HOH . C 3 HOH A 48 448 36 HOH HOH . C 3 HOH A 49 449 156 HOH HOH . C 3 HOH A 50 450 9 HOH HOH . C 3 HOH A 51 451 69 HOH HOH . C 3 HOH A 52 452 62 HOH HOH . C 3 HOH A 53 453 66 HOH HOH . C 3 HOH A 54 454 90 HOH HOH . C 3 HOH A 55 455 95 HOH HOH . C 3 HOH A 56 456 256 HOH HOH . C 3 HOH A 57 457 122 HOH HOH . C 3 HOH A 58 458 14 HOH HOH . C 3 HOH A 59 459 70 HOH HOH . C 3 HOH A 60 460 137 HOH HOH . C 3 HOH A 61 461 27 HOH HOH . C 3 HOH A 62 462 116 HOH HOH . C 3 HOH A 63 463 37 HOH HOH . C 3 HOH A 64 464 57 HOH HOH . C 3 HOH A 65 465 24 HOH HOH . C 3 HOH A 66 466 183 HOH HOH . C 3 HOH A 67 467 140 HOH HOH . C 3 HOH A 68 468 134 HOH HOH . C 3 HOH A 69 469 169 HOH HOH . C 3 HOH A 70 470 185 HOH HOH . C 3 HOH A 71 471 25 HOH HOH . C 3 HOH A 72 472 44 HOH HOH . C 3 HOH A 73 473 39 HOH HOH . C 3 HOH A 74 474 270 HOH HOH . C 3 HOH A 75 475 153 HOH HOH . C 3 HOH A 76 476 54 HOH HOH . C 3 HOH A 77 477 141 HOH HOH . C 3 HOH A 78 478 101 HOH HOH . C 3 HOH A 79 479 111 HOH HOH . C 3 HOH A 80 480 64 HOH HOH . C 3 HOH A 81 481 93 HOH HOH . C 3 HOH A 82 482 58 HOH HOH . C 3 HOH A 83 483 11 HOH HOH . C 3 HOH A 84 484 236 HOH HOH . C 3 HOH A 85 485 117 HOH HOH . C 3 HOH A 86 486 13 HOH HOH . C 3 HOH A 87 487 16 HOH HOH . C 3 HOH A 88 488 119 HOH HOH . C 3 HOH A 89 489 2 HOH HOH . C 3 HOH A 90 490 8 HOH HOH . C 3 HOH A 91 491 133 HOH HOH . C 3 HOH A 92 492 104 HOH HOH . C 3 HOH A 93 493 272 HOH HOH . C 3 HOH A 94 494 217 HOH HOH . C 3 HOH A 95 495 99 HOH HOH . C 3 HOH A 96 496 38 HOH HOH . C 3 HOH A 97 497 6 HOH HOH . C 3 HOH A 98 498 72 HOH HOH . C 3 HOH A 99 499 240 HOH HOH . C 3 HOH A 100 500 120 HOH HOH . C 3 HOH A 101 501 89 HOH HOH . C 3 HOH A 102 502 23 HOH HOH . C 3 HOH A 103 503 259 HOH HOH . C 3 HOH A 104 504 118 HOH HOH . C 3 HOH A 105 505 31 HOH HOH . C 3 HOH A 106 506 235 HOH HOH . C 3 HOH A 107 507 154 HOH HOH . C 3 HOH A 108 508 10 HOH HOH . C 3 HOH A 109 509 214 HOH HOH . C 3 HOH A 110 510 128 HOH HOH . C 3 HOH A 111 511 164 HOH HOH . C 3 HOH A 112 512 12 HOH HOH . C 3 HOH A 113 513 33 HOH HOH . C 3 HOH A 114 514 46 HOH HOH . C 3 HOH A 115 515 45 HOH HOH . C 3 HOH A 116 516 30 HOH HOH . C 3 HOH A 117 517 52 HOH HOH . C 3 HOH A 118 518 123 HOH HOH . C 3 HOH A 119 519 125 HOH HOH . C 3 HOH A 120 520 4 HOH HOH . C 3 HOH A 121 521 105 HOH HOH . C 3 HOH A 122 522 209 HOH HOH . C 3 HOH A 123 523 146 HOH HOH . C 3 HOH A 124 524 20 HOH HOH . C 3 HOH A 125 525 249 HOH HOH . C 3 HOH A 126 526 103 HOH HOH . C 3 HOH A 127 527 19 HOH HOH . C 3 HOH A 128 528 109 HOH HOH . C 3 HOH A 129 529 193 HOH HOH . C 3 HOH A 130 530 200 HOH HOH . C 3 HOH A 131 531 74 HOH HOH . C 3 HOH A 132 532 203 HOH HOH . C 3 HOH A 133 533 32 HOH HOH . C 3 HOH A 134 534 83 HOH HOH . C 3 HOH A 135 535 22 HOH HOH . C 3 HOH A 136 536 107 HOH HOH . C 3 HOH A 137 537 197 HOH HOH . C 3 HOH A 138 538 71 HOH HOH . C 3 HOH A 139 539 18 HOH HOH . C 3 HOH A 140 540 171 HOH HOH . C 3 HOH A 141 541 47 HOH HOH . C 3 HOH A 142 542 181 HOH HOH . C 3 HOH A 143 543 87 HOH HOH . C 3 HOH A 144 544 61 HOH HOH . C 3 HOH A 145 545 100 HOH HOH . C 3 HOH A 146 546 288 HOH HOH . C 3 HOH A 147 547 208 HOH HOH . C 3 HOH A 148 548 55 HOH HOH . C 3 HOH A 149 549 96 HOH HOH . C 3 HOH A 150 550 211 HOH HOH . C 3 HOH A 151 551 220 HOH HOH . C 3 HOH A 152 552 281 HOH HOH . C 3 HOH A 153 553 60 HOH HOH . C 3 HOH A 154 554 34 HOH HOH . C 3 HOH A 155 555 241 HOH HOH . C 3 HOH A 156 556 158 HOH HOH . C 3 HOH A 157 557 283 HOH HOH . C 3 HOH A 158 558 121 HOH HOH . C 3 HOH A 159 559 50 HOH HOH . C 3 HOH A 160 560 230 HOH HOH . C 3 HOH A 161 561 159 HOH HOH . C 3 HOH A 162 562 88 HOH HOH . C 3 HOH A 163 563 68 HOH HOH . C 3 HOH A 164 564 161 HOH HOH . C 3 HOH A 165 565 188 HOH HOH . C 3 HOH A 166 566 189 HOH HOH . C 3 HOH A 167 567 207 HOH HOH . C 3 HOH A 168 568 143 HOH HOH . C 3 HOH A 169 569 131 HOH HOH . C 3 HOH A 170 570 170 HOH HOH . C 3 HOH A 171 571 292 HOH HOH . C 3 HOH A 172 572 291 HOH HOH . C 3 HOH A 173 573 108 HOH HOH . C 3 HOH A 174 574 252 HOH HOH . C 3 HOH A 175 575 139 HOH HOH . C 3 HOH A 176 576 3 HOH HOH . C 3 HOH A 177 577 290 HOH HOH . C 3 HOH A 178 578 84 HOH HOH . C 3 HOH A 179 579 127 HOH HOH . C 3 HOH A 180 580 15 HOH HOH . C 3 HOH A 181 581 130 HOH HOH . C 3 HOH A 182 582 63 HOH HOH . C 3 HOH A 183 583 266 HOH HOH . C 3 HOH A 184 584 215 HOH HOH . C 3 HOH A 185 585 246 HOH HOH . C 3 HOH A 186 586 218 HOH HOH . C 3 HOH A 187 587 29 HOH HOH . C 3 HOH A 188 588 278 HOH HOH . C 3 HOH A 189 589 73 HOH HOH . C 3 HOH A 190 590 76 HOH HOH . C 3 HOH A 191 591 98 HOH HOH . C 3 HOH A 192 592 48 HOH HOH . C 3 HOH A 193 593 212 HOH HOH . C 3 HOH A 194 594 178 HOH HOH . C 3 HOH A 195 595 135 HOH HOH . C 3 HOH A 196 596 7 HOH HOH . C 3 HOH A 197 597 102 HOH HOH . C 3 HOH A 198 598 86 HOH HOH . C 3 HOH A 199 599 94 HOH HOH . C 3 HOH A 200 600 279 HOH HOH . C 3 HOH A 201 601 287 HOH HOH . C 3 HOH A 202 602 269 HOH HOH . C 3 HOH A 203 603 237 HOH HOH . C 3 HOH A 204 604 160 HOH HOH . C 3 HOH A 205 605 226 HOH HOH . C 3 HOH A 206 606 67 HOH HOH . C 3 HOH A 207 607 78 HOH HOH . C 3 HOH A 208 608 274 HOH HOH . C 3 HOH A 209 609 277 HOH HOH . C 3 HOH A 210 610 21 HOH HOH . C 3 HOH A 211 611 228 HOH HOH . C 3 HOH A 212 612 132 HOH HOH . C 3 HOH A 213 613 255 HOH HOH . C 3 HOH A 214 614 75 HOH HOH . C 3 HOH A 215 615 150 HOH HOH . C 3 HOH A 216 616 286 HOH HOH . C 3 HOH A 217 617 254 HOH HOH . C 3 HOH A 218 618 280 HOH HOH . C 3 HOH A 219 619 239 HOH HOH . C 3 HOH A 220 620 263 HOH HOH . C 3 HOH A 221 621 223 HOH HOH . C 3 HOH A 222 622 114 HOH HOH . C 3 HOH A 223 623 175 HOH HOH . C 3 HOH A 224 624 191 HOH HOH . C 3 HOH A 225 625 243 HOH HOH . C 3 HOH A 226 626 227 HOH HOH . C 3 HOH A 227 627 201 HOH HOH . C 3 HOH A 228 628 149 HOH HOH . C 3 HOH A 229 629 221 HOH HOH . C 3 HOH A 230 630 182 HOH HOH . C 3 HOH A 231 631 65 HOH HOH . C 3 HOH A 232 632 172 HOH HOH . C 3 HOH A 233 633 115 HOH HOH . C 3 HOH A 234 634 110 HOH HOH . C 3 HOH A 235 635 173 HOH HOH . C 3 HOH A 236 636 199 HOH HOH . C 3 HOH A 237 637 180 HOH HOH . C 3 HOH A 238 638 136 HOH HOH . C 3 HOH A 239 639 213 HOH HOH . C 3 HOH A 240 640 238 HOH HOH . C 3 HOH A 241 641 234 HOH HOH . C 3 HOH A 242 642 176 HOH HOH . C 3 HOH A 243 643 229 HOH HOH . C 3 HOH A 244 644 195 HOH HOH . C 3 HOH A 245 645 264 HOH HOH . C 3 HOH A 246 646 204 HOH HOH . C 3 HOH A 247 647 248 HOH HOH . C 3 HOH A 248 648 113 HOH HOH . C 3 HOH A 249 649 225 HOH HOH . C 3 HOH A 250 650 198 HOH HOH . C 3 HOH A 251 651 268 HOH HOH . C 3 HOH A 252 652 28 HOH HOH . C 3 HOH A 253 653 244 HOH HOH . C 3 HOH A 254 654 80 HOH HOH . C 3 HOH A 255 655 276 HOH HOH . C 3 HOH A 256 656 196 HOH HOH . C 3 HOH A 257 657 144 HOH HOH . C 3 HOH A 258 658 282 HOH HOH . C 3 HOH A 259 659 267 HOH HOH . C 3 HOH A 260 660 284 HOH HOH . C 3 HOH A 261 661 162 HOH HOH . C 3 HOH A 262 662 42 HOH HOH . C 3 HOH A 263 663 106 HOH HOH . C 3 HOH A 264 664 231 HOH HOH . C 3 HOH A 265 665 206 HOH HOH . C 3 HOH A 266 666 250 HOH HOH . C 3 HOH A 267 667 260 HOH HOH . C 3 HOH A 268 668 271 HOH HOH . C 3 HOH A 269 669 262 HOH HOH . C 3 HOH A 270 670 165 HOH HOH . C 3 HOH A 271 671 222 HOH HOH . C 3 HOH A 272 672 91 HOH HOH . C 3 HOH A 273 673 210 HOH HOH . C 3 HOH A 274 674 224 HOH HOH . C 3 HOH A 275 675 92 HOH HOH . C 3 HOH A 276 676 202 HOH HOH . C 3 HOH A 277 677 166 HOH HOH . C 3 HOH A 278 678 233 HOH HOH . C 3 HOH A 279 679 163 HOH HOH . C 3 HOH A 280 680 187 HOH HOH . C 3 HOH A 281 681 192 HOH HOH . C 3 HOH A 282 682 257 HOH HOH . C 3 HOH A 283 683 247 HOH HOH . C 3 HOH A 284 684 85 HOH HOH . C 3 HOH A 285 685 242 HOH HOH . C 3 HOH A 286 686 124 HOH HOH . C 3 HOH A 287 687 129 HOH HOH . C 3 HOH A 288 688 253 HOH HOH . C 3 HOH A 289 689 184 HOH HOH . C 3 HOH A 290 690 261 HOH HOH . C 3 HOH A 291 691 77 HOH HOH . C 3 HOH A 292 692 293 HOH HOH . C 3 HOH A 293 693 245 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 PDC . . . B 2 45.662 14.932 12.568 1 32.24 ? N1 PDC 301 A 1 HETATM 2 C C2 PDC . . . B 2 46.366 15.744 11.778 1 30.78 ? C2 PDC 301 A 1 HETATM 3 C C3 PDC . . . B 2 46.027 15.918 10.46 1 29.48 ? C3 PDC 301 A 1 HETATM 4 C C4 PDC . . . B 2 44.945 15.238 9.923 1 34.89 ? C4 PDC 301 A 1 HETATM 5 C C5 PDC . . . B 2 44.244 14.395 10.772 1 37.83 ? C5 PDC 301 A 1 HETATM 6 C C6 PDC . . . B 2 44.624 14.25 12.113 1 34.38 ? C6 PDC 301 A 1 HETATM 7 C C7 PDC . . . B 2 47.524 16.473 12.383 1 31.44 ? C7 PDC 301 A 1 HETATM 8 O O1 PDC . . . B 2 47.627 16.459 13.601 1 27.6 ? O1 PDC 301 A 1 HETATM 9 O O2 PDC . . . B 2 48.32 17.038 11.643 1 30.55 ? O2 PDC 301 A 1 HETATM 10 C C8 PDC . . . B 2 43.901 13.328 13.06 1 28.55 ? C8 PDC 301 A 1 HETATM 11 O O3 PDC . . . B 2 44.094 13.533 14.255 1 30.49 ? O3 PDC 301 A 1 HETATM 12 O O4 PDC . . . B 2 43.222 12.422 12.611 1 21.36 ? O4 PDC 301 A 1 # _model_server_stats.io_time_ms 66 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 288 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 12 #