data_5Z39 # _model_server_result.job_id snBNhLOwQRjKe4GurnxPGw _model_server_result.datetime_utc '2024-11-18 03:46:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5z39 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":402}' # _entry.id 5Z39 # _exptl.entry_id 5Z39 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 722.97 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5Z39 _cell.length_a 33.468 _cell.length_b 43.618 _cell.length_c 101.681 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5Z39 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id metalc _struct_conn.details ? _struct_conn.id metalc1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id O _struct_conn.ptnr1_label_comp_id GLU _struct_conn.ptnr1_label_seq_id 146 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id GLU _struct_conn.ptnr1_auth_seq_id 288 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id D _struct_conn.ptnr2_label_atom_id NA _struct_conn.ptnr2_label_comp_id NA _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id NA _struct_conn.ptnr2_auth_seq_id 403 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.876 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C38 H75 O10 P' _chem_comp.formula_weight 722.97 _chem_comp.id LHG _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C1 LHG sing 181 n n O1 HO1 LHG sing 182 n n C1 C2 LHG sing 183 n n C1 HC11 LHG sing 184 n n C1 HC12 LHG sing 185 n n C2 O2 LHG sing 186 n n C2 C3 LHG sing 187 n n C2 HC2 LHG sing 188 n n O2 H02 LHG sing 189 n n C3 O3 LHG sing 190 n n C3 HC31 LHG sing 191 n n C3 HC32 LHG sing 192 n n O3 P LHG sing 193 n n P O4 LHG sing 194 n n P O5 LHG doub 195 n n P O6 LHG sing 196 n n O4 HO4 LHG sing 197 n n O6 C4 LHG sing 198 n n C4 C5 LHG sing 199 n n C4 HC41 LHG sing 200 n n C4 HC42 LHG sing 201 n n C5 C6 LHG sing 202 n n C5 O7 LHG sing 203 n n C5 HC5 LHG sing 204 n n C6 O8 LHG sing 205 n n C6 HC61 LHG sing 206 n n C6 HC62 LHG sing 207 n n O7 C7 LHG sing 208 n n C7 O9 LHG doub 209 n n C7 C8 LHG sing 210 n n C8 C9 LHG sing 211 n n C8 HC81 LHG sing 212 n n C8 HC82 LHG sing 213 n n C9 C10 LHG sing 214 n n C9 HC91 LHG sing 215 n n C9 HC92 LHG sing 216 n n C10 C11 LHG sing 217 n n C10 H101 LHG sing 218 n n C10 H102 LHG sing 219 n n O8 C23 LHG sing 220 n n C23 O10 LHG doub 221 n n C23 C24 LHG sing 222 n n C24 C25 LHG sing 223 n n C24 H241 LHG sing 224 n n C24 H242 LHG sing 225 n n C11 C12 LHG sing 226 n n C11 H111 LHG sing 227 n n C11 H112 LHG sing 228 n n C12 C13 LHG sing 229 n n C12 H121 LHG sing 230 n n C12 H122 LHG sing 231 n n C13 C14 LHG sing 232 n n C13 H131 LHG sing 233 n n C13 H132 LHG sing 234 n n C14 C15 LHG sing 235 n n C14 H141 LHG sing 236 n n C14 H142 LHG sing 237 n n C15 C16 LHG sing 238 n n C15 H151 LHG sing 239 n n C15 H152 LHG sing 240 n n C16 C17 LHG sing 241 n n C16 H161 LHG sing 242 n n C16 H162 LHG sing 243 n n C17 C18 LHG sing 244 n n C17 H171 LHG sing 245 n n C17 H172 LHG sing 246 n n C18 C19 LHG sing 247 n n C18 H181 LHG sing 248 n n C18 H182 LHG sing 249 n n C19 C20 LHG sing 250 n n C19 H191 LHG sing 251 n n C19 H192 LHG sing 252 n n C20 C21 LHG sing 253 n n C20 H201 LHG sing 254 n n C20 H202 LHG sing 255 n n C21 C22 LHG sing 256 n n C21 H211 LHG sing 257 n n C21 H212 LHG sing 258 n n C22 H221 LHG sing 259 n n C22 H222 LHG sing 260 n n C22 H223 LHG sing 261 n n C25 C26 LHG sing 262 n n C25 H251 LHG sing 263 n n C25 H252 LHG sing 264 n n C26 C27 LHG sing 265 n n C26 H261 LHG sing 266 n n C26 H262 LHG sing 267 n n C27 C28 LHG sing 268 n n C27 H271 LHG sing 269 n n C27 H272 LHG sing 270 n n C28 C29 LHG sing 271 n n C28 H281 LHG sing 272 n n C28 H282 LHG sing 273 n n C29 C30 LHG sing 274 n n C29 H291 LHG sing 275 n n C29 H292 LHG sing 276 n n C30 C31 LHG sing 277 n n C30 H301 LHG sing 278 n n C30 H302 LHG sing 279 n n C31 C32 LHG sing 280 n n C31 H311 LHG sing 281 n n C31 H312 LHG sing 282 n n C32 C33 LHG sing 283 n n C32 H321 LHG sing 284 n n C32 H322 LHG sing 285 n n C33 C34 LHG sing 286 n n C33 H331 LHG sing 287 n n C33 H332 LHG sing 288 n n C34 C35 LHG sing 289 n n C34 H341 LHG sing 290 n n C34 H342 LHG sing 291 n n C35 C36 LHG sing 292 n n C35 H351 LHG sing 293 n n C35 H352 LHG sing 294 n n C36 C37 LHG sing 295 n n C36 H361 LHG sing 296 n n C36 H362 LHG sing 297 n n C37 C38 LHG sing 298 n n C37 H371 LHG sing 299 n n C37 H372 LHG sing 300 n n C38 H381 LHG sing 301 n n C38 H382 LHG sing 302 n n C38 H383 LHG sing 303 n n # _atom_sites.entry_id 5Z39 _atom_sites.fract_transf_matrix[1][1] 0.029879 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.022926 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009835 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PEF A 1 401 1 PEF PEF . C 3 LHG A 1 402 2 LHG LHG . D 4 NA A 1 403 1 NA NA . E 5 HOH A 1 501 5 HOH HOH . E 5 HOH A 2 502 2 HOH HOH . E 5 HOH A 3 503 1 HOH HOH . E 5 HOH A 4 504 4 HOH HOH . E 5 HOH A 5 505 3 HOH HOH . E 5 HOH A 6 506 6 HOH HOH . E 5 HOH A 7 507 7 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 LHG . B . C 3 4.414 -7.499 -24.372 0.5 52.16 ? O1 LHG 402 A 1 HETATM 2 C C1 LHG . B . C 3 3.889 -6.747 -25.472 0.5 53.12 ? C1 LHG 402 A 1 HETATM 3 C C2 LHG . B . C 3 2.91 -5.713 -24.933 0.5 56.04 ? C2 LHG 402 A 1 HETATM 4 O O2 LHG . B . C 3 2.065 -6.34 -23.961 0.5 57.43 ? O2 LHG 402 A 1 HETATM 5 C C3 LHG . B . C 3 2.054 -5.157 -26.065 0.5 53.92 ? C3 LHG 402 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 232 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 5 #