data_5Z41 # _model_server_result.job_id a_aW7_A8T0B4OfneI2laFA _model_server_result.datetime_utc '2024-12-02 11:55:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5z41 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":205}' # _entry.id 5Z41 # _exptl.entry_id 5Z41 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 106.12 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description DI(HYDROXYETHYL)ETHER _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5Z41 _cell.length_a 68.697 _cell.length_b 68.697 _cell.length_c 36.642 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5Z41 _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_554 -x,-x+y,-z-1/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 -12.214 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE2 GLU 34 A GLU 34 1_555 B ZN ZN . A ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.972 ? metalc ? metalc2 A SG CYS 48 A CYS 48 1_555 B ZN ZN . A ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.431 ? metalc ? metalc3 A SG CYS 79 A CYS 79 1_555 B ZN ZN . A ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.336 ? metalc ? metalc4 A ND1 HIS 81 A HIS 81 1_555 B ZN ZN . A ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.225 ? # _chem_comp.formula 'C4 H10 O3' _chem_comp.formula_weight 106.12 _chem_comp.id PEG _chem_comp.mon_nstd_flag . _chem_comp.name DI(HYDROXYETHYL)ETHER _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 PEG sing 237 n n C1 C2 PEG sing 238 n n C1 H11 PEG sing 239 n n C1 H12 PEG sing 240 n n O1 HO1 PEG sing 241 n n C2 O2 PEG sing 242 n n C2 H21 PEG sing 243 n n C2 H22 PEG sing 244 n n O2 C3 PEG sing 245 n n C3 C4 PEG sing 246 n n C3 H31 PEG sing 247 n n C3 H32 PEG sing 248 n n C4 O4 PEG sing 249 n n C4 H41 PEG sing 250 n n C4 H42 PEG sing 251 n n O4 HO4 PEG sing 252 n n # _atom_sites.entry_id 5Z41 _atom_sites.fract_transf_matrix[1][1] 0.014557 _atom_sites.fract_transf_matrix[1][2] 0.008404 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016809 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.027291 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 201 1 ZN ZN . C 3 MG A 1 202 1 MG MG . D 3 MG A 1 203 2 MG MG . E 4 PEG A 1 204 1 PEG PEG . F 4 PEG A 1 205 2 PEG PEG . G 5 HOH A 1 301 50 HOH HOH . G 5 HOH A 2 302 53 HOH HOH . G 5 HOH A 3 303 6 HOH HOH . G 5 HOH A 4 304 36 HOH HOH . G 5 HOH A 5 305 3 HOH HOH . G 5 HOH A 6 306 51 HOH HOH . G 5 HOH A 7 307 8 HOH HOH . G 5 HOH A 8 308 59 HOH HOH . G 5 HOH A 9 309 60 HOH HOH . G 5 HOH A 10 310 11 HOH HOH . G 5 HOH A 11 311 30 HOH HOH . G 5 HOH A 12 312 43 HOH HOH . G 5 HOH A 13 313 39 HOH HOH . G 5 HOH A 14 314 42 HOH HOH . G 5 HOH A 15 315 40 HOH HOH . G 5 HOH A 16 316 21 HOH HOH . G 5 HOH A 17 317 54 HOH HOH . G 5 HOH A 18 318 22 HOH HOH . G 5 HOH A 19 319 1 HOH HOH . G 5 HOH A 20 320 49 HOH HOH . G 5 HOH A 21 321 10 HOH HOH . G 5 HOH A 22 322 25 HOH HOH . G 5 HOH A 23 323 35 HOH HOH . G 5 HOH A 24 324 20 HOH HOH . G 5 HOH A 25 325 17 HOH HOH . G 5 HOH A 26 326 33 HOH HOH . G 5 HOH A 27 327 14 HOH HOH . G 5 HOH A 28 328 12 HOH HOH . G 5 HOH A 29 329 61 HOH HOH . G 5 HOH A 30 330 56 HOH HOH . G 5 HOH A 31 331 55 HOH HOH . G 5 HOH A 32 332 16 HOH HOH . G 5 HOH A 33 333 48 HOH HOH . G 5 HOH A 34 334 23 HOH HOH . G 5 HOH A 35 335 26 HOH HOH . G 5 HOH A 36 336 5 HOH HOH . G 5 HOH A 37 337 18 HOH HOH . G 5 HOH A 38 338 2 HOH HOH . G 5 HOH A 39 339 15 HOH HOH . G 5 HOH A 40 340 13 HOH HOH . G 5 HOH A 41 341 9 HOH HOH . G 5 HOH A 42 342 57 HOH HOH . G 5 HOH A 43 343 19 HOH HOH . G 5 HOH A 44 344 4 HOH HOH . G 5 HOH A 45 345 63 HOH HOH . G 5 HOH A 46 346 47 HOH HOH . G 5 HOH A 47 347 45 HOH HOH . G 5 HOH A 48 348 7 HOH HOH . G 5 HOH A 49 349 28 HOH HOH . G 5 HOH A 50 350 52 HOH HOH . G 5 HOH A 51 351 62 HOH HOH . G 5 HOH A 52 352 38 HOH HOH . G 5 HOH A 53 353 32 HOH HOH . G 5 HOH A 54 354 64 HOH HOH . G 5 HOH A 55 355 34 HOH HOH . G 5 HOH A 56 356 44 HOH HOH . G 5 HOH A 57 357 24 HOH HOH . G 5 HOH A 58 358 41 HOH HOH . G 5 HOH A 59 359 31 HOH HOH . G 5 HOH A 60 360 46 HOH HOH . G 5 HOH A 61 361 27 HOH HOH . G 5 HOH A 62 362 29 HOH HOH . G 5 HOH A 63 363 58 HOH HOH . G 5 HOH A 64 364 37 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PEG . . . F 4 5.231 29.159 11.297 1 41.83 ? C1 PEG 205 A 1 HETATM 2 O O1 PEG . . . F 4 5.372 29.429 12.691 1 46.39 ? O1 PEG 205 A 1 HETATM 3 C C2 PEG . . . F 4 6.392 29.811 10.557 1 42.41 ? C2 PEG 205 A 1 HETATM 4 O O2 PEG . . . F 4 6.92 28.893 9.611 1 42.25 ? O2 PEG 205 A 1 HETATM 5 C C3 PEG . . . F 4 8.325 28.715 9.724 1 45.76 ? C3 PEG 205 A 1 HETATM 6 C C4 PEG . . . F 4 8.576 27.429 10.497 1 46.4 ? C4 PEG 205 A 1 HETATM 7 O O4 PEG . . . F 4 8.837 26.329 9.625 1 48.13 ? O4 PEG 205 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 303 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 7 #