data_5Z45 # _model_server_result.job_id rL5ZkaB2jbN4O02PKb_aXw _model_server_result.datetime_utc '2024-11-25 03:01:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5z45 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":402}' # _entry.id 5Z45 # _exptl.entry_id 5Z45 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 168.195 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3-[(Z)-2-isocyanoethenyl]-1H-indole _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5Z45 _cell.length_a 116.257 _cell.length_b 116.257 _cell.length_c 49.687 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5Z45 _symmetry.cell_setting ? _symmetry.Int_Tables_number 76 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,H 1 1 B,E,F,G,I 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A NZ LYS 278 A LYS 278 1_555 C O2A GST . A GST 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.299 ? metalc ? metalc1 A OD1 ASN 41 A ASN 41 1_555 D MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.093 ? metalc ? metalc2 A OE2 GLU 63 A GLU 63 1_555 D MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? metalc ? metalc3 A OD2 ASP 65 A ASP 65 1_555 D MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.831 ? metalc ? metalc4 B OD1 ASN 41 B ASN 41 1_555 G MG MG . B MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.923 ? metalc ? metalc5 B OE1 GLU 63 B GLU 63 1_555 G MG MG . B MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.326 ? # _chem_comp.formula 'C11 H8 N2' _chem_comp.formula_weight 168.195 _chem_comp.id 8XL _chem_comp.mon_nstd_flag . _chem_comp.name 3-[(Z)-2-isocyanoethenyl]-1H-indole _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C09 C10 8XL sing 1 n y C09 C08 8XL doub 2 n y C10 C11 8XL doub 3 n y C08 N07 8XL sing 4 n y C08 C13 8XL sing 5 n y C11 C12 8XL sing 6 n y N07 C06 8XL sing 7 n y C13 C12 8XL doub 8 n y C13 C05 8XL sing 9 n y C06 C05 8XL doub 10 n y C05 C04 8XL sing 11 n n C01 N02 8XL trip 12 n n N02 C03 8XL sing 13 n n C04 C03 8XL doub 14 z n C10 H6 8XL sing 15 n n C03 H1 8XL sing 16 n n C04 H2 8XL sing 17 n n C06 H3 8XL sing 18 n n N07 H4 8XL sing 19 n n C09 H5 8XL sing 20 n n C11 H7 8XL sing 21 n n C12 H8 8XL sing 22 n n # _atom_sites.entry_id 5Z45 _atom_sites.fract_transf_matrix[1][1] 0.008602 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008602 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.020126 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GST A 1 401 2 GST GST . D 3 MG A 1 402 2 MG MG . E 2 GST B 1 401 1 GST GST . F 4 8XL B 1 402 1 8XL LIG . G 3 MG B 1 403 1 MG MG . H 5 HOH A 1 501 2 HOH HOH . H 5 HOH A 2 502 17 HOH HOH . H 5 HOH A 3 503 16 HOH HOH . H 5 HOH A 4 504 8 HOH HOH . H 5 HOH A 5 505 9 HOH HOH . H 5 HOH A 6 506 19 HOH HOH . H 5 HOH A 7 507 6 HOH HOH . H 5 HOH A 8 508 25 HOH HOH . H 5 HOH A 9 509 13 HOH HOH . H 5 HOH A 10 510 21 HOH HOH . H 5 HOH A 11 511 24 HOH HOH . I 5 HOH B 1 501 20 HOH HOH . I 5 HOH B 2 502 7 HOH HOH . I 5 HOH B 3 503 18 HOH HOH . I 5 HOH B 4 504 26 HOH HOH . I 5 HOH B 5 505 10 HOH HOH . I 5 HOH B 6 506 5 HOH HOH . I 5 HOH B 7 507 4 HOH HOH . I 5 HOH B 8 508 3 HOH HOH . I 5 HOH B 9 509 15 HOH HOH . I 5 HOH B 10 510 23 HOH HOH . I 5 HOH B 11 511 14 HOH HOH . I 5 HOH B 12 512 1 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 8XL . . . F 4 28.3 169.74 -24.67 0.85 87.48 ? C10 8XL 402 B 1 HETATM 2 C C13 8XL . . . F 4 29.828 170.842 -22.56 0.85 86.93 ? C13 8XL 402 B 1 HETATM 3 C C01 8XL . . . F 4 30.087 173.625 -18.326 0.85 59.04 ? C01 8XL 402 B 1 HETATM 4 N N02 8XL . . . F 4 30.687 172.766 -18.748 0.85 56.6 ? N02 8XL 402 B 1 HETATM 5 C C03 8XL . . . F 4 31.449 171.674 -19.286 0.85 66.91 ? C03 8XL 402 B 1 HETATM 6 C C04 8XL . . . F 4 31.397 171.204 -20.516 0.85 76.95 ? C04 8XL 402 B 1 HETATM 7 C C05 8XL . . . F 4 30.455 171.692 -21.606 0.85 82.62 ? C05 8XL 402 B 1 HETATM 8 C C06 8XL . . . F 4 30.044 172.984 -21.858 0.85 80.24 ? C06 8XL 402 B 1 HETATM 9 N N07 8XL . . . F 4 29.223 172.921 -22.895 0.85 83.93 ? N07 8XL 402 B 1 HETATM 10 C C08 8XL . . . F 4 29.067 171.643 -23.35 0.85 87.97 ? C08 8XL 402 B 1 HETATM 11 C C09 8XL . . . F 4 28.287 171.1 -24.407 0.85 88.06 ? C09 8XL 402 B 1 HETATM 12 C C11 8XL . . . F 4 29.084 168.927 -23.846 0.85 90.98 ? C11 8XL 402 B 1 HETATM 13 C C12 8XL . . . F 4 29.849 169.449 -22.805 0.85 88.88 ? C12 8XL 402 B 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 24 _model_server_stats.query_time_ms 318 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 13 #