data_5Z49 # _model_server_result.job_id DdQuI-vbwS-Ic5F6isLXPw _model_server_result.datetime_utc '2024-11-16 15:30:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5z49 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":401}' # _entry.id 5Z49 # _exptl.entry_id 5Z49 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 310.09 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description RIBULOSE-1,5-DIPHOSPHATE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5Z49 _cell.length_a 62.57 _cell.length_b 86.7 _cell.length_c 87.18 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5Z49 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C5 H12 O11 P2' _chem_comp.formula_weight 310.09 _chem_comp.id RUB _chem_comp.mon_nstd_flag . _chem_comp.name RIBULOSE-1,5-DIPHOSPHATE _chem_comp.type saccharide _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 RUB sing 277 n n C1 O1 RUB sing 278 n n C1 H11 RUB sing 279 n n C1 H12 RUB sing 280 n n C2 C3 RUB sing 281 n n C2 O2 RUB doub 282 n n C3 C4 RUB sing 283 n n C3 O3 RUB sing 284 n n C3 H3 RUB sing 285 n n C4 C5 RUB sing 286 n n C4 O4 RUB sing 287 n n C4 H4 RUB sing 288 n n C5 O5 RUB sing 289 n n C5 H51 RUB sing 290 n n C5 H52 RUB sing 291 n n O1 P1 RUB sing 292 n n O3 HO3 RUB sing 293 n n O4 HO4 RUB sing 294 n n O5 P2 RUB sing 295 n n P1 O1P RUB doub 296 n n P1 O2P RUB sing 297 n n P1 O3P RUB sing 298 n n P2 O4P RUB doub 299 n n P2 O5P RUB sing 300 n n P2 O6P RUB sing 301 n n O2P HOP2 RUB sing 302 n n O3P HOP3 RUB sing 303 n n O5P HOP5 RUB sing 304 n n O6P HOP6 RUB sing 305 n n # _atom_sites.entry_id 5Z49 _atom_sites.fract_transf_matrix[1][1] 0.015982 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011534 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011471 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 RUB A 1 401 476 RUB RUB . D 3 HOH B 1 401 177 HOH HOH . D 3 HOH B 2 402 185 HOH HOH . D 3 HOH B 3 403 8 HOH HOH . D 3 HOH B 4 404 61 HOH HOH . D 3 HOH B 5 405 130 HOH HOH . D 3 HOH B 6 406 149 HOH HOH . D 3 HOH B 7 407 45 HOH HOH . D 3 HOH B 8 408 58 HOH HOH . D 3 HOH B 9 409 103 HOH HOH . D 3 HOH B 10 410 72 HOH HOH . D 3 HOH B 11 411 84 HOH HOH . D 3 HOH B 12 412 126 HOH HOH . D 3 HOH B 13 413 7 HOH HOH . D 3 HOH B 14 414 83 HOH HOH . D 3 HOH B 15 415 42 HOH HOH . D 3 HOH B 16 416 26 HOH HOH . D 3 HOH B 17 417 3 HOH HOH . D 3 HOH B 18 418 21 HOH HOH . D 3 HOH B 19 419 114 HOH HOH . D 3 HOH B 20 420 93 HOH HOH . D 3 HOH B 21 421 17 HOH HOH . D 3 HOH B 22 422 70 HOH HOH . D 3 HOH B 23 423 15 HOH HOH . D 3 HOH B 24 424 67 HOH HOH . D 3 HOH B 25 425 20 HOH HOH . D 3 HOH B 26 426 95 HOH HOH . D 3 HOH B 27 427 80 HOH HOH . D 3 HOH B 28 428 31 HOH HOH . D 3 HOH B 29 429 79 HOH HOH . D 3 HOH B 30 430 173 HOH HOH . D 3 HOH B 31 431 142 HOH HOH . D 3 HOH B 32 432 113 HOH HOH . D 3 HOH B 33 433 13 HOH HOH . D 3 HOH B 34 434 121 HOH HOH . D 3 HOH B 35 435 94 HOH HOH . D 3 HOH B 36 436 47 HOH HOH . D 3 HOH B 37 437 168 HOH HOH . D 3 HOH B 38 438 138 HOH HOH . D 3 HOH B 39 439 127 HOH HOH . D 3 HOH B 40 440 30 HOH HOH . D 3 HOH B 41 441 176 HOH HOH . D 3 HOH B 42 442 125 HOH HOH . D 3 HOH B 43 443 100 HOH HOH . D 3 HOH B 44 444 52 HOH HOH . D 3 HOH B 45 445 4 HOH HOH . D 3 HOH B 46 446 91 HOH HOH . D 3 HOH B 47 447 153 HOH HOH . D 3 HOH B 48 448 39 HOH HOH . D 3 HOH B 49 449 10 HOH HOH . D 3 HOH B 50 450 9 HOH HOH . D 3 HOH B 51 451 28 HOH HOH . D 3 HOH B 52 452 159 HOH HOH . D 3 HOH B 53 453 1 HOH HOH . D 3 HOH B 54 454 59 HOH HOH . D 3 HOH B 55 455 157 HOH HOH . D 3 HOH B 56 456 169 HOH HOH . D 3 HOH B 57 457 128 HOH HOH . D 3 HOH B 58 458 140 HOH HOH . D 3 HOH B 59 459 141 HOH HOH . D 3 HOH B 60 460 180 HOH HOH . D 3 HOH B 61 461 188 HOH HOH . D 3 HOH B 62 462 66 HOH HOH . D 3 HOH B 63 463 87 HOH HOH . D 3 HOH B 64 464 171 HOH HOH . D 3 HOH B 65 465 146 HOH HOH . D 3 HOH B 66 466 25 HOH HOH . D 3 HOH B 67 467 92 HOH HOH . D 3 HOH B 68 468 109 HOH HOH . D 3 HOH B 69 469 111 HOH HOH . D 3 HOH B 70 470 184 HOH HOH . D 3 HOH B 71 471 88 HOH HOH . D 3 HOH B 72 472 6 HOH HOH . D 3 HOH B 73 473 116 HOH HOH . D 3 HOH B 74 474 97 HOH HOH . D 3 HOH B 75 475 129 HOH HOH . D 3 HOH B 76 476 107 HOH HOH . D 3 HOH B 77 477 73 HOH HOH . D 3 HOH B 78 478 69 HOH HOH . D 3 HOH B 79 479 96 HOH HOH . D 3 HOH B 80 480 112 HOH HOH . D 3 HOH B 81 481 108 HOH HOH . D 3 HOH B 82 482 74 HOH HOH . D 3 HOH B 83 483 118 HOH HOH . E 3 HOH A 1 501 160 HOH HOH . E 3 HOH A 2 502 134 HOH HOH . E 3 HOH A 3 503 37 HOH HOH . E 3 HOH A 4 504 27 HOH HOH . E 3 HOH A 5 505 179 HOH HOH . E 3 HOH A 6 506 14 HOH HOH . E 3 HOH A 7 507 76 HOH HOH . E 3 HOH A 8 508 164 HOH HOH . E 3 HOH A 9 509 18 HOH HOH . E 3 HOH A 10 510 110 HOH HOH . E 3 HOH A 11 511 22 HOH HOH . E 3 HOH A 12 512 41 HOH HOH . E 3 HOH A 13 513 43 HOH HOH . E 3 HOH A 14 514 5 HOH HOH . E 3 HOH A 15 515 19 HOH HOH . E 3 HOH A 16 516 55 HOH HOH . E 3 HOH A 17 517 54 HOH HOH . E 3 HOH A 18 518 90 HOH HOH . E 3 HOH A 19 519 64 HOH HOH . E 3 HOH A 20 520 175 HOH HOH . E 3 HOH A 21 521 68 HOH HOH . E 3 HOH A 22 522 181 HOH HOH . E 3 HOH A 23 523 2 HOH HOH . E 3 HOH A 24 524 82 HOH HOH . E 3 HOH A 25 525 156 HOH HOH . E 3 HOH A 26 526 53 HOH HOH . E 3 HOH A 27 527 29 HOH HOH . E 3 HOH A 28 528 133 HOH HOH . E 3 HOH A 29 529 34 HOH HOH . E 3 HOH A 30 530 65 HOH HOH . E 3 HOH A 31 531 24 HOH HOH . E 3 HOH A 32 532 56 HOH HOH . E 3 HOH A 33 533 35 HOH HOH . E 3 HOH A 34 534 105 HOH HOH . E 3 HOH A 35 535 50 HOH HOH . E 3 HOH A 36 536 135 HOH HOH . E 3 HOH A 37 537 99 HOH HOH . E 3 HOH A 38 538 136 HOH HOH . E 3 HOH A 39 539 78 HOH HOH . E 3 HOH A 40 540 119 HOH HOH . E 3 HOH A 41 541 57 HOH HOH . E 3 HOH A 42 542 148 HOH HOH . E 3 HOH A 43 543 36 HOH HOH . E 3 HOH A 44 544 12 HOH HOH . E 3 HOH A 45 545 190 HOH HOH . E 3 HOH A 46 546 32 HOH HOH . E 3 HOH A 47 547 131 HOH HOH . E 3 HOH A 48 548 192 HOH HOH . E 3 HOH A 49 549 23 HOH HOH . E 3 HOH A 50 550 46 HOH HOH . E 3 HOH A 51 551 122 HOH HOH . E 3 HOH A 52 552 161 HOH HOH . E 3 HOH A 53 553 115 HOH HOH . E 3 HOH A 54 554 106 HOH HOH . E 3 HOH A 55 555 145 HOH HOH . E 3 HOH A 56 556 89 HOH HOH . E 3 HOH A 57 557 62 HOH HOH . E 3 HOH A 58 558 158 HOH HOH . E 3 HOH A 59 559 104 HOH HOH . E 3 HOH A 60 560 48 HOH HOH . E 3 HOH A 61 561 155 HOH HOH . E 3 HOH A 62 562 151 HOH HOH . E 3 HOH A 63 563 86 HOH HOH . E 3 HOH A 64 564 77 HOH HOH . E 3 HOH A 65 565 172 HOH HOH . E 3 HOH A 66 566 40 HOH HOH . E 3 HOH A 67 567 49 HOH HOH . E 3 HOH A 68 568 63 HOH HOH . E 3 HOH A 69 569 143 HOH HOH . E 3 HOH A 70 570 132 HOH HOH . E 3 HOH A 71 571 183 HOH HOH . E 3 HOH A 72 572 102 HOH HOH . E 3 HOH A 73 573 147 HOH HOH . E 3 HOH A 74 574 124 HOH HOH . E 3 HOH A 75 575 38 HOH HOH . E 3 HOH A 76 576 33 HOH HOH . E 3 HOH A 77 577 101 HOH HOH . E 3 HOH A 78 578 123 HOH HOH . E 3 HOH A 79 579 75 HOH HOH . E 3 HOH A 80 580 11 HOH HOH . E 3 HOH A 81 581 16 HOH HOH . E 3 HOH A 82 582 137 HOH HOH . E 3 HOH A 83 583 60 HOH HOH . E 3 HOH A 84 584 81 HOH HOH . E 3 HOH A 85 585 193 HOH HOH . E 3 HOH A 86 586 144 HOH HOH . E 3 HOH A 87 587 44 HOH HOH . E 3 HOH A 88 588 191 HOH HOH . E 3 HOH A 89 589 186 HOH HOH . E 3 HOH A 90 590 187 HOH HOH . E 3 HOH A 91 591 182 HOH HOH . E 3 HOH A 92 592 85 HOH HOH . E 3 HOH A 93 593 170 HOH HOH . E 3 HOH A 94 594 117 HOH HOH . E 3 HOH A 95 595 150 HOH HOH . E 3 HOH A 96 596 174 HOH HOH . E 3 HOH A 97 597 154 HOH HOH . E 3 HOH A 98 598 167 HOH HOH . E 3 HOH A 99 599 189 HOH HOH . E 3 HOH A 100 600 178 HOH HOH . E 3 HOH A 101 601 139 HOH HOH . E 3 HOH A 102 602 51 HOH HOH . E 3 HOH A 103 603 120 HOH HOH . E 3 HOH A 104 604 152 HOH HOH . E 3 HOH A 105 605 98 HOH HOH . E 3 HOH A 106 606 71 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 RUB . . . C 2 6.672 -8.06 -17.557 1 38.77 ? C1 RUB 401 A 1 HETATM 2 C C2 RUB . . . C 2 5.473 -8.829 -16.965 1 54.68 ? C2 RUB 401 A 1 HETATM 3 C C3 RUB . . . C 2 5.637 -10.045 -16.034 1 53.7 ? C3 RUB 401 A 1 HETATM 4 C C4 RUB . . . C 2 5.41 -9.626 -14.584 1 41.94 ? C4 RUB 401 A 1 HETATM 5 C C5 RUB . . . C 2 5.91 -10.738 -13.662 1 39.11 ? C5 RUB 401 A 1 HETATM 6 O O1 RUB . . . C 2 7.902 -8.686 -17.295 1 34.73 ? O1 RUB 401 A 1 HETATM 7 O O2 RUB . . . C 2 4.371 -8.467 -17.228 1 47.89 ? O2 RUB 401 A 1 HETATM 8 O O3 RUB . . . C 2 4.692 -11.028 -16.344 1 53.01 ? O3 RUB 401 A 1 HETATM 9 O O4 RUB . . . C 2 6.136 -8.447 -14.364 1 36.24 ? O4 RUB 401 A 1 HETATM 10 O O5 RUB . . . C 2 7.245 -11.034 -13.978 1 32.45 ? O5 RUB 401 A 1 HETATM 11 P P1 RUB . . . C 2 9.07 -7.999 -16.337 1 30.92 ? P1 RUB 401 A 1 HETATM 12 P P2 RUB . . . C 2 8.108 -12.01 -12.96 1 33.13 ? P2 RUB 401 A 1 HETATM 13 O O1P RUB . . . C 2 9.306 -6.556 -16.73 1 33.6 ? O1P RUB 401 A 1 HETATM 14 O O2P RUB . . . C 2 10.358 -8.781 -16.521 1 26.29 -1 O2P RUB 401 A 1 HETATM 15 O O3P RUB . . . C 2 8.721 -8.061 -14.88 1 31.35 ? O3P RUB 401 A 1 HETATM 16 O O4P RUB . . . C 2 9.402 -12.382 -13.632 1 28.18 ? O4P RUB 401 A 1 HETATM 17 O O5P RUB . . . C 2 7.343 -13.281 -12.651 1 31.43 -1 O5P RUB 401 A 1 HETATM 18 O O6P RUB . . . C 2 8.385 -11.261 -11.657 1 25.48 ? O6P RUB 401 A 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 239 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 18 #