data_5Z4P # _model_server_result.job_id WzDUReGNPAkfCg3AG1xtBA _model_server_result.datetime_utc '2025-07-08 23:40:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5z4p # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"R","auth_seq_id":506}' # _entry.id 5Z4P # _exptl.entry_id 5Z4P _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 366.41 _entity.id 11 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 6,7,8-trimethoxy-1-(4-methoxyphenyl)-4,5-dihydro-2~{H}-benzo[e]indazole _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5Z4P _cell.length_a 103.832 _cell.length_b 154.843 _cell.length_c 181.024 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5Z4P _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 11 _struct_asym.id R _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 39 A ASP 39 1_555 K CA CA . A CA 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.529 ? metalc ? metalc2 A OD2 ASP 39 A ASP 39 1_555 K CA CA . A CA 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.369 ? metalc ? metalc3 A O THR 41 A THR 41 1_555 K CA CA . A CA 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.305 ? metalc ? metalc4 A OG1 THR 41 A THR 41 1_555 K CA CA . A CA 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.39 ? metalc ? metalc5 A O GLY 44 A GLY 44 1_555 K CA CA . A CA 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.598 ? metalc ? metalc6 A OE1 GLU 55 A GLU 55 1_555 K CA CA . A CA 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? metalc ? metalc7 A OE2 GLU 55 A GLU 55 1_555 K CA CA . A CA 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.908 ? metalc ? metalc8 G O3G GTP . A GTP 501 1_555 H MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.142 ? metalc ? metalc9 G O2B GTP . A GTP 501 1_555 H MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.226 ? metalc ? metalc10 B OE1 GLN 11 B GLN 11 1_555 N MG MG . B MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.192 ? metalc ? metalc11 B OE2 GLU 108 B GLU 110 1_555 P CA CA . B CA 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.198 ? metalc ? metalc12 B OE1 GLU 111 B GLU 113 1_555 P CA CA . B CA 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.833 ? metalc ? metalc13 B OE1 GLU 111 B GLU 113 1_555 Z CA CA . C CA 508 4_545 ? ? ? ? ? ? ? ? ? ? ? ? 2.821 ? metalc ? metalc14 B OD2 ASP 177 B ASP 179 1_555 N MG MG . B MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.31 ? metalc ? metalc15 M O2A GDP . B GDP 501 1_555 N MG MG . B MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.215 ? metalc ? metalc16 N MG MG . B MG 502 1_555 JA O HOH . B HOH 609 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.704 ? metalc ? metalc17 C OE1 GLU 71 C GLU 71 1_555 V MG MG . C MG 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.938 ? metalc ? metalc18 U O3G GTP . C GTP 503 1_555 V MG MG . C MG 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.429 ? metalc ? metalc19 U O2B GTP . C GTP 503 1_555 V MG MG . C MG 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.319 ? metalc ? metalc20 V MG MG . C MG 504 1_555 KA O HOH . C HOH 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.882 ? metalc ? metalc21 DA O2B GDP . D GDP 501 1_555 EA MG MG . D MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.08 ? # _chem_comp.formula 'C21 H22 N2 O4' _chem_comp.formula_weight 366.41 _chem_comp.id 97O _chem_comp.mon_nstd_flag . _chem_comp.name 6,7,8-trimethoxy-1-(4-methoxyphenyl)-4,5-dihydro-2~{H}-benzo[e]indazole _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C2 O24 97O sing 1 n n C2 C3 97O doub 2 n y C2 C1 97O sing 3 n y O24 C25 97O sing 4 n n C3 O26 97O sing 5 n n C3 C4 97O sing 6 n y O26 C27 97O sing 7 n n C4 C5 97O doub 8 n y C5 C10 97O sing 9 n n C5 C6 97O sing 10 n y C10 C11 97O doub 11 n y C10 C9 97O sing 12 n y C11 C14 97O sing 13 n n C11 N12 97O sing 14 n y C14 C19 97O doub 15 n y C14 C15 97O sing 16 n y C19 C18 97O sing 17 n y C18 C17 97O doub 18 n y C17 O20 97O sing 19 n n C17 C16 97O sing 20 n y O20 C21 97O sing 21 n n C16 C15 97O doub 22 n y N12 N13 97O sing 23 n y N13 C9 97O doub 24 n y C8 C7 97O sing 25 n n C7 C6 97O sing 26 n n C6 C1 97O doub 27 n y C1 O22 97O sing 28 n n O22 C23 97O sing 29 n n C25 H1 97O sing 30 n n C25 H2 97O sing 31 n n C25 H3 97O sing 32 n n C27 H4 97O sing 33 n n C27 H5 97O sing 34 n n C27 H6 97O sing 35 n n C4 H7 97O sing 36 n n C19 H8 97O sing 37 n n C18 H9 97O sing 38 n n C21 H10 97O sing 39 n n C21 H11 97O sing 40 n n C21 H12 97O sing 41 n n C16 H13 97O sing 42 n n C15 H14 97O sing 43 n n N12 H15 97O sing 44 n n C8 H17 97O sing 45 n n C8 H18 97O sing 46 n n C7 H20 97O sing 47 n n C7 H21 97O sing 48 n n C23 H22 97O sing 49 n n C23 H23 97O sing 50 n n C23 H24 97O sing 51 n n C8 C9 97O sing 52 n n # _atom_sites.entry_id 5Z4P _atom_sites.fract_transf_matrix[1][1] 0.009631 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006458 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005524 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 5 GTP A 1 501 501 GTP GTP . H 6 MG A 1 502 502 MG MG . I 7 GOL A 1 503 504 GOL GOL . J 7 GOL A 1 504 505 GOL GOL . K 8 CA A 1 505 506 CA CA . L 7 GOL A 1 506 201 GOL GOL . M 9 GDP B 1 501 501 GDP GDP . N 6 MG B 1 502 502 MG MG . O 7 GOL B 1 503 506 GOL GOL . P 8 CA B 1 504 508 CA CA . Q 10 MES B 1 505 509 MES MES . R 11 97O B 1 506 999 97O UNK . S 7 GOL C 1 501 504 GOL GOL . T 7 GOL C 1 502 505 GOL GOL . U 5 GTP C 1 503 501 GTP GTP . V 6 MG C 1 504 502 MG MG . W 7 GOL C 1 505 503 GOL GOL . X 7 GOL C 1 506 504 GOL GOL . Y 7 GOL C 1 507 505 GOL GOL . Z 8 CA C 1 508 508 CA CA . AA 12 IMD C 1 509 509 IMD IMD . BA 12 IMD C 1 510 510 IMD IMD . CA 12 IMD C 1 511 511 IMD IMD . DA 9 GDP D 1 501 501 GDP GDP . EA 6 MG D 1 502 502 MG MG . FA 7 GOL D 1 503 504 GOL GOL . GA 7 GOL D 1 504 505 GOL GOL . HA 13 ACP F 1 401 402 ACP ACP . IA 14 HOH A 1 601 32 HOH HOH . IA 14 HOH A 2 602 46 HOH HOH . IA 14 HOH A 3 603 34 HOH HOH . IA 14 HOH A 4 604 28 HOH HOH . IA 14 HOH A 5 605 16 HOH HOH . IA 14 HOH A 6 606 30 HOH HOH . IA 14 HOH A 7 607 36 HOH HOH . IA 14 HOH A 8 608 31 HOH HOH . IA 14 HOH A 9 609 10 HOH HOH . IA 14 HOH A 10 610 6 HOH HOH . IA 14 HOH A 11 611 21 HOH HOH . JA 14 HOH B 1 601 17 HOH HOH . JA 14 HOH B 2 602 37 HOH HOH . JA 14 HOH B 3 603 41 HOH HOH . JA 14 HOH B 4 604 40 HOH HOH . JA 14 HOH B 5 605 19 HOH HOH . JA 14 HOH B 6 606 38 HOH HOH . JA 14 HOH B 7 607 42 HOH HOH . JA 14 HOH B 8 608 39 HOH HOH . JA 14 HOH B 9 609 3 HOH HOH . JA 14 HOH B 10 610 7 HOH HOH . JA 14 HOH B 11 611 20 HOH HOH . JA 14 HOH B 12 612 18 HOH HOH . JA 14 HOH B 13 613 44 HOH HOH . KA 14 HOH C 1 601 8 HOH HOH . KA 14 HOH C 2 602 49 HOH HOH . KA 14 HOH C 3 603 14 HOH HOH . KA 14 HOH C 4 604 50 HOH HOH . KA 14 HOH C 5 605 11 HOH HOH . KA 14 HOH C 6 606 45 HOH HOH . KA 14 HOH C 7 607 48 HOH HOH . KA 14 HOH C 8 608 47 HOH HOH . KA 14 HOH C 9 609 4 HOH HOH . KA 14 HOH C 10 610 51 HOH HOH . KA 14 HOH C 11 611 15 HOH HOH . KA 14 HOH C 12 612 1 HOH HOH . KA 14 HOH C 13 613 2 HOH HOH . KA 14 HOH C 14 614 9 HOH HOH . KA 14 HOH C 15 615 5 HOH HOH . KA 14 HOH C 16 616 12 HOH HOH . KA 14 HOH C 17 617 43 HOH HOH . LA 14 HOH D 1 601 52 HOH HOH . LA 14 HOH D 2 602 23 HOH HOH . LA 14 HOH D 3 603 22 HOH HOH . LA 14 HOH D 4 604 25 HOH HOH . MA 14 HOH F 1 501 13 HOH HOH . MA 14 HOH F 2 502 26 HOH HOH . MA 14 HOH F 3 503 27 HOH HOH . MA 14 HOH F 4 504 35 HOH HOH . MA 14 HOH F 5 505 33 HOH HOH . MA 14 HOH F 6 506 24 HOH HOH . MA 14 HOH F 7 507 29 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C2 97O . . . R 11 14.67 -65.433 -38.968 1 80.06 ? C2 97O 506 B 1 HETATM 2 O O24 97O . . . R 11 13.544 -65.133 -38.133 1 77.27 ? O24 97O 506 B 1 HETATM 3 C C25 97O . . . R 11 13.524 -63.921 -37.424 1 76.51 ? C25 97O 506 B 1 HETATM 4 C C3 97O . . . R 11 14.554 -65.238 -40.019 1 78.42 ? C3 97O 506 B 1 HETATM 5 O O26 97O . . . R 11 13.338 -64.663 -40.495 1 76.98 ? O26 97O 506 B 1 HETATM 6 C C27 97O . . . R 11 12.902 -65.262 -41.712 1 70.16 ? C27 97O 506 B 1 HETATM 7 C C4 97O . . . R 11 15.332 -65.426 -40.895 1 74.14 ? C4 97O 506 B 1 HETATM 8 C C5 97O . . . R 11 16.682 -66 -40.698 1 73.51 ? C5 97O 506 B 1 HETATM 9 C C10 97O . . . R 11 17.722 -66.34 -41.516 1 69.68 ? C10 97O 506 B 1 HETATM 10 C C11 97O . . . R 11 18.363 -66.072 -42.785 1 70.37 ? C11 97O 506 B 1 HETATM 11 C C14 97O . . . R 11 17.941 -64.98 -43.83 1 73.13 ? C14 97O 506 B 1 HETATM 12 C C19 97O . . . R 11 18.301 -65.16 -45.179 1 70.32 ? C19 97O 506 B 1 HETATM 13 C C18 97O . . . R 11 17.93 -64.202 -46.171 1 70.39 ? C18 97O 506 B 1 HETATM 14 C C17 97O . . . R 11 17.214 -63.026 -45.809 1 69.76 ? C17 97O 506 B 1 HETATM 15 O O20 97O . . . R 11 16.877 -62.092 -46.843 1 65.56 ? O20 97O 506 B 1 HETATM 16 C C21 97O . . . R 11 16.513 -60.797 -46.465 1 58.05 ? C21 97O 506 B 1 HETATM 17 C C16 97O . . . R 11 16.85 -62.835 -44.453 1 70.97 ? C16 97O 506 B 1 HETATM 18 C C15 97O . . . R 11 17.216 -63.815 -43.454 1 72.55 ? C15 97O 506 B 1 HETATM 19 N N12 97O . . . R 11 19.459 -66.945 -42.975 1 73.44 ? N12 97O 506 B 1 HETATM 20 N N13 97O . . . R 11 19.591 -67.786 -41.923 1 73.43 ? N13 97O 506 B 1 HETATM 21 C C9 97O . . . R 11 18.648 -67.541 -41.031 1 74.05 ? C9 97O 506 B 1 HETATM 22 C C8 97O . . . R 11 18.306 -68.227 -39.487 1 77.58 ? C8 97O 506 B 1 HETATM 23 C C7 97O . . . R 11 18.018 -66.941 -38.578 1 75.45 ? C7 97O 506 B 1 HETATM 24 C C6 97O . . . R 11 16.923 -66.339 -39.186 1 76.04 ? C6 97O 506 B 1 HETATM 25 C C1 97O . . . R 11 15.637 -65.92 -38.431 1 77.43 ? C1 97O 506 B 1 HETATM 26 O O22 97O . . . R 11 15.613 -66.145 -36.992 1 79.06 ? O22 97O 506 B 1 HETATM 27 C C23 97O . . . R 11 16.36 -65.272 -36.111 1 72.04 ? C23 97O 506 B 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 29 _model_server_stats.query_time_ms 425 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 27 #