data_5Z4U # _model_server_result.job_id s0ZD2cNNEngFFtQ4pkBDbg _model_server_result.datetime_utc '2025-07-07 19:19:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5z4u # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"U","auth_seq_id":503}' # _entry.id 5Z4U # _exptl.entry_id 5Z4U _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 368.426 _entity.id 10 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-(4-ethoxyphenyl)-1-methyl-3-(3,4,5-trimethoxyphenyl)-1H-pyrazole _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5Z4U _cell.length_a 105.491 _cell.length_b 158.233 _cell.length_c 182.099 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5Z4U _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 10 O N N ? 10 U N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 39 A ASP 39 1_555 I CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.547 ? metalc ? metalc2 A O THR 41 A THR 41 1_555 I CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.996 ? metalc ? metalc3 A OG1 THR 41 A THR 41 1_555 I CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.464 ? metalc ? metalc4 A O GLY 44 A GLY 44 1_555 I CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.831 ? metalc ? metalc5 A OE2 GLU 55 A GLU 55 1_555 I CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.316 ? metalc ? metalc6 G O1G GTP . A GTP 501 1_555 H MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? metalc ? metalc7 G O1B GTP . A GTP 501 1_555 H MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.293 ? metalc ? metalc8 B OE1 GLN 11 B GLN 11 1_555 K MG MG . B MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.534 ? metalc ? metalc9 B OE1 GLU 111 B GLU 111 1_555 M CA CA . B CA 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.601 ? metalc ? metalc10 B OD2 ASP 177 B ASP 177 1_555 K MG MG . B MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.843 ? metalc ? metalc11 J O1A GDP . B GDP 501 1_555 K MG MG . B MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.502 ? metalc ? metalc12 C OD1 ASP 39 C ASP 39 1_555 R CA CA . C CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.549 ? metalc ? metalc13 C OD2 ASP 39 C ASP 39 1_555 R CA CA . C CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.824 ? metalc ? metalc14 C O THR 41 C THR 41 1_555 R CA CA . C CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.087 ? metalc ? metalc15 C OG1 THR 41 C THR 41 1_555 R CA CA . C CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.23 ? metalc ? metalc16 C O GLY 44 C GLY 44 1_555 R CA CA . C CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.751 ? metalc ? metalc17 C OE2 GLU 55 C GLU 55 1_555 R CA CA . C CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.166 ? metalc ? metalc18 P O1G GTP . C GTP 501 1_555 Q MG MG . C MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? metalc ? metalc19 P O1B GTP . C GTP 501 1_555 Q MG MG . C MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.241 ? metalc ? metalc20 S O1G GTP . D GTP 501 1_555 T MG MG . D MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.969 ? metalc ? metalc21 S O2G GTP . D GTP 501 1_555 T MG MG . D MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.422 ? # _chem_comp.formula 'C21 H24 N2 O4' _chem_comp.formula_weight 368.426 _chem_comp.id 96C _chem_comp.mon_nstd_flag . _chem_comp.name 4-(4-ethoxyphenyl)-1-methyl-3-(3,4,5-trimethoxyphenyl)-1H-pyrazole _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C18 O17 96C sing 1 n n O17 C16 96C sing 2 n n C21 O20 96C sing 3 n n O20 C19 96C sing 4 n n C16 C19 96C doub 5 n y C16 C15 96C sing 6 n y C19 C22 96C sing 7 n y C15 C14 96C doub 8 n y C22 O23 96C sing 9 n n C22 C25 96C doub 10 n y O23 C24 96C sing 11 n n C14 C25 96C sing 12 n y C14 C13 96C sing 13 n n N12 C13 96C doub 14 n y N12 N10 96C sing 15 n y C13 C08 96C sing 16 n y N10 C11 96C sing 17 n n N10 C09 96C sing 18 n y C06 C05 96C doub 19 n y C06 C07 96C sing 20 n y C08 C09 96C doub 21 n y C08 C07 96C sing 22 n n C05 C04 96C sing 23 n y C07 C26 96C doub 24 n y C04 O03 96C sing 25 n n C04 C27 96C doub 26 n y C26 C27 96C sing 27 n y O03 C02 96C sing 28 n n C02 C01 96C sing 29 n n C01 H1 96C sing 30 n n C01 H2 96C sing 31 n n C01 H3 96C sing 32 n n C02 H4 96C sing 33 n n C02 H5 96C sing 34 n n C05 H6 96C sing 35 n n C06 H7 96C sing 36 n n C09 H8 96C sing 37 n n C11 H9 96C sing 38 n n C11 H10 96C sing 39 n n C11 H11 96C sing 40 n n C15 H12 96C sing 41 n n C18 H13 96C sing 42 n n C18 H14 96C sing 43 n n C18 H15 96C sing 44 n n C21 H16 96C sing 45 n n C21 H17 96C sing 46 n n C21 H18 96C sing 47 n n C24 H19 96C sing 48 n n C24 H20 96C sing 49 n n C24 H21 96C sing 50 n n C25 H22 96C sing 51 n n C26 H23 96C sing 52 n n C27 H24 96C sing 53 n n # _atom_sites.entry_id 5Z4U _atom_sites.fract_transf_matrix[1][1] 0.009479 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00632 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005492 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 5 GTP A 1 501 501 GTP GTP . H 6 MG A 1 502 502 MG MG . I 7 CA A 1 503 503 CA CA . J 8 GDP B 1 501 501 GDP GDP . K 6 MG B 1 502 502 MG MG . L 9 MES B 1 503 505 MES MES . M 7 CA B 1 504 2 CA CA . N 9 MES B 1 505 505 MES MES . O 10 96C B 1 506 1 96C 7A3 . P 5 GTP C 1 501 501 GTP GTP . Q 6 MG C 1 502 502 MG MG . R 7 CA C 1 503 1 CA CA . S 5 GTP D 1 501 501 GTP GTP . T 6 MG D 1 502 502 MG MG . U 10 96C D 1 503 2 96C 7A3 . V 11 ACP F 1 401 401 ACP ACP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C01 96C . . . U 10 -13.273 -4.452 -15.824 1 75.58 ? C01 96C 503 D 1 HETATM 2 C C02 96C . . . U 10 -14.011 -5.743 -16.166 1 76 ? C02 96C 503 D 1 HETATM 3 O O03 96C . . . U 10 -13.78 -6.031 -17.514 1 76.8 ? O03 96C 503 D 1 HETATM 4 C C04 96C . . . U 10 -13.94 -7.294 -18.119 1 75.13 ? C04 96C 503 D 1 HETATM 5 C C05 96C . . . U 10 -14.147 -7.254 -19.486 1 76.94 ? C05 96C 503 D 1 HETATM 6 C C06 96C . . . U 10 -14.313 -8.406 -20.237 1 74.59 ? C06 96C 503 D 1 HETATM 7 C C07 96C . . . U 10 -14.264 -9.666 -19.637 1 74.06 ? C07 96C 503 D 1 HETATM 8 C C08 96C . . . U 10 -14.387 -10.86 -20.369 1 75.24 ? C08 96C 503 D 1 HETATM 9 C C09 96C . . . U 10 -14.76 -12.09 -19.83 1 77.42 ? C09 96C 503 D 1 HETATM 10 N N10 96C . . . U 10 -14.728 -13.001 -20.777 1 77.54 ? N10 96C 503 D 1 HETATM 11 C C11 96C . . . U 10 -15.071 -14.399 -20.597 1 77.34 ? C11 96C 503 D 1 HETATM 12 N N12 96C . . . U 10 -14.326 -12.41 -21.927 1 74.41 ? N12 96C 503 D 1 HETATM 13 C C13 96C . . . U 10 -14.112 -11.131 -21.723 1 72.6 ? C13 96C 503 D 1 HETATM 14 C C14 96C . . . U 10 -13.683 -10.292 -22.734 1 70.9 ? C14 96C 503 D 1 HETATM 15 C C15 96C . . . U 10 -14.335 -10.266 -23.96 1 70.31 ? C15 96C 503 D 1 HETATM 16 C C16 96C . . . U 10 -13.883 -9.414 -24.969 1 73.15 ? C16 96C 503 D 1 HETATM 17 O O17 96C . . . U 10 -14.517 -9.378 -26.222 1 75.73 ? O17 96C 503 D 1 HETATM 18 C C18 96C . . . U 10 -15.866 -9.014 -26.236 1 74.36 ? C18 96C 503 D 1 HETATM 19 C C19 96C . . . U 10 -12.779 -8.589 -24.751 1 72.02 ? C19 96C 503 D 1 HETATM 20 O O20 96C . . . U 10 -12.329 -7.738 -25.77 1 70.16 ? O20 96C 503 D 1 HETATM 21 C C21 96C . . . U 10 -12.954 -6.488 -25.785 1 71.18 ? C21 96C 503 D 1 HETATM 22 C C22 96C . . . U 10 -12.123 -8.609 -23.522 1 71.09 ? C22 96C 503 D 1 HETATM 23 O O23 96C . . . U 10 -11.022 -7.752 -23.356 1 69.03 ? O23 96C 503 D 1 HETATM 24 C C24 96C . . . U 10 -10.187 -7.895 -22.239 1 69.28 ? C24 96C 503 D 1 HETATM 25 C C25 96C . . . U 10 -12.575 -9.476 -22.524 1 72.02 ? C25 96C 503 D 1 HETATM 26 C C26 96C . . . U 10 -14.032 -9.706 -18.253 1 72.9 ? C26 96C 503 D 1 HETATM 27 C C27 96C . . . U 10 -13.885 -8.542 -17.501 1 72.75 ? C27 96C 503 D 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 265 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 27 #