data_5Z4Y # _model_server_result.job_id 2aEIv1CjQ-kyv0EHdVGoHQ _model_server_result.datetime_utc '2024-10-19 01:46:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5z4y # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":101}' # _entry.id 5Z4Y # _exptl.entry_id 5Z4Y _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5Z4Y _cell.length_a 44.261 _cell.length_b 44.261 _cell.length_c 209.3 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5Z4Y _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 116 n n C1 C2 GOL sing 117 n n C1 H11 GOL sing 118 n n C1 H12 GOL sing 119 n n O1 HO1 GOL sing 120 n n C2 O2 GOL sing 121 n n C2 C3 GOL sing 122 n n C2 H2 GOL sing 123 n n O2 HO2 GOL sing 124 n n C3 O3 GOL sing 125 n n C3 H31 GOL sing 126 n n C3 H32 GOL sing 127 n n O3 HO3 GOL sing 128 n n # _atom_sites.entry_id 5Z4Y _atom_sites.fract_transf_matrix[1][1] 0.022593 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.022593 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004778 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GOL A 1 101 1 GOL GOL . D 3 HOH A 1 201 8 HOH HOH . D 3 HOH A 2 202 46 HOH HOH . D 3 HOH A 3 203 15 HOH HOH . D 3 HOH A 4 204 11 HOH HOH . D 3 HOH A 5 205 33 HOH HOH . D 3 HOH A 6 206 38 HOH HOH . D 3 HOH A 7 207 42 HOH HOH . D 3 HOH A 8 208 26 HOH HOH . D 3 HOH A 9 209 19 HOH HOH . D 3 HOH A 10 210 6 HOH HOH . D 3 HOH A 11 211 41 HOH HOH . D 3 HOH A 12 212 7 HOH HOH . D 3 HOH A 13 213 52 HOH HOH . D 3 HOH A 14 214 43 HOH HOH . D 3 HOH A 15 215 34 HOH HOH . D 3 HOH A 16 216 1 HOH HOH . D 3 HOH A 17 217 4 HOH HOH . D 3 HOH A 18 218 51 HOH HOH . D 3 HOH A 19 219 10 HOH HOH . D 3 HOH A 20 220 16 HOH HOH . D 3 HOH A 21 221 12 HOH HOH . D 3 HOH A 22 222 47 HOH HOH . D 3 HOH A 23 223 17 HOH HOH . D 3 HOH A 24 224 2 HOH HOH . D 3 HOH A 25 225 24 HOH HOH . E 3 HOH B 1 101 44 HOH HOH . E 3 HOH B 2 102 14 HOH HOH . E 3 HOH B 3 103 35 HOH HOH . E 3 HOH B 4 104 28 HOH HOH . E 3 HOH B 5 105 22 HOH HOH . E 3 HOH B 6 106 27 HOH HOH . E 3 HOH B 7 107 30 HOH HOH . E 3 HOH B 8 108 18 HOH HOH . E 3 HOH B 9 109 36 HOH HOH . E 3 HOH B 10 110 5 HOH HOH . E 3 HOH B 11 111 13 HOH HOH . E 3 HOH B 12 112 31 HOH HOH . E 3 HOH B 13 113 50 HOH HOH . E 3 HOH B 14 114 29 HOH HOH . E 3 HOH B 15 115 23 HOH HOH . E 3 HOH B 16 116 3 HOH HOH . E 3 HOH B 17 117 32 HOH HOH . E 3 HOH B 18 118 25 HOH HOH . E 3 HOH B 19 119 21 HOH HOH . E 3 HOH B 20 120 49 HOH HOH . E 3 HOH B 21 121 9 HOH HOH . E 3 HOH B 22 122 45 HOH HOH . E 3 HOH B 23 123 39 HOH HOH . E 3 HOH B 24 124 48 HOH HOH . E 3 HOH B 25 125 40 HOH HOH . E 3 HOH B 26 126 37 HOH HOH . E 3 HOH B 27 127 20 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . C 2 -2.531 15.782 -0.266 1 28.4 ? C1 GOL 101 A 1 HETATM 2 O O1 GOL . . . C 2 -2.929 14.471 -0.658 1 30.68 ? O1 GOL 101 A 1 HETATM 3 C C2 GOL . . . C 2 -1.978 16.546 -1.474 1 27.91 ? C2 GOL 101 A 1 HETATM 4 O O2 GOL . . . C 2 -2.916 16.516 -2.541 1 25.74 ? O2 GOL 101 A 1 HETATM 5 C C3 GOL . . . C 2 -1.6 17.99 -1.112 1 29.31 ? C3 GOL 101 A 1 HETATM 6 O O3 GOL . . . C 2 -2.621 18.882 -1.52 1 27.18 ? O3 GOL 101 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 28 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 345 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #