data_5Z5E # _model_server_result.job_id dIc-7hw7W4H0jeB8aKTkqg _model_server_result.datetime_utc '2025-06-16 13:27:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5z5e # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"N","auth_seq_id":608}' # _entry.id 5Z5E # _exptl.entry_id 5Z5E _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 93.27 _cell.angle_gamma 90 _cell.entry_id 5Z5E _cell.length_a 79.41 _cell.length_b 121.096 _cell.length_c 133.635 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5Z5E _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 L N N ? 3 M N N ? 3 N N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 5Z5E _atom_sites.fract_transf_matrix[1][1] 0.012593 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000719 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008258 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007495 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SO4 A 1 601 1 SO4 SO4 . D 2 SO4 A 1 602 4 SO4 SO4 . E 2 SO4 A 1 603 8 SO4 SO4 . F 3 GOL A 1 604 3 GOL GOL . G 2 SO4 B 1 601 2 SO4 SO4 . H 2 SO4 B 1 602 3 SO4 SO4 . I 2 SO4 B 1 603 5 SO4 SO4 . J 2 SO4 B 1 604 6 SO4 SO4 . K 2 SO4 B 1 605 7 SO4 SO4 . L 3 GOL B 1 606 1 GOL GOL . M 3 GOL B 1 607 2 GOL GOL . N 3 GOL B 1 608 4 GOL GOL . O 4 HOH A 1 701 245 HOH HOH . O 4 HOH A 2 702 223 HOH HOH . O 4 HOH A 3 703 158 HOH HOH . O 4 HOH A 4 704 150 HOH HOH . O 4 HOH A 5 705 244 HOH HOH . O 4 HOH A 6 706 34 HOH HOH . O 4 HOH A 7 707 138 HOH HOH . O 4 HOH A 8 708 252 HOH HOH . O 4 HOH A 9 709 237 HOH HOH . O 4 HOH A 10 710 31 HOH HOH . O 4 HOH A 11 711 198 HOH HOH . O 4 HOH A 12 712 140 HOH HOH . O 4 HOH A 13 713 210 HOH HOH . O 4 HOH A 14 714 162 HOH HOH . O 4 HOH A 15 715 65 HOH HOH . O 4 HOH A 16 716 147 HOH HOH . O 4 HOH A 17 717 231 HOH HOH . O 4 HOH A 18 718 60 HOH HOH . O 4 HOH A 19 719 123 HOH HOH . O 4 HOH A 20 720 232 HOH HOH . O 4 HOH A 21 721 161 HOH HOH . O 4 HOH A 22 722 291 HOH HOH . O 4 HOH A 23 723 30 HOH HOH . O 4 HOH A 24 724 202 HOH HOH . O 4 HOH A 25 725 181 HOH HOH . O 4 HOH A 26 726 195 HOH HOH . O 4 HOH A 27 727 136 HOH HOH . O 4 HOH A 28 728 74 HOH HOH . O 4 HOH A 29 729 56 HOH HOH . O 4 HOH A 30 730 5 HOH HOH . O 4 HOH A 31 731 36 HOH HOH . O 4 HOH A 32 732 70 HOH HOH . O 4 HOH A 33 733 277 HOH HOH . O 4 HOH A 34 734 61 HOH HOH . O 4 HOH A 35 735 250 HOH HOH . O 4 HOH A 36 736 280 HOH HOH . O 4 HOH A 37 737 148 HOH HOH . O 4 HOH A 38 738 228 HOH HOH . O 4 HOH A 39 739 176 HOH HOH . O 4 HOH A 40 740 172 HOH HOH . O 4 HOH A 41 741 219 HOH HOH . O 4 HOH A 42 742 262 HOH HOH . O 4 HOH A 43 743 54 HOH HOH . O 4 HOH A 44 744 188 HOH HOH . O 4 HOH A 45 745 216 HOH HOH . O 4 HOH A 46 746 118 HOH HOH . O 4 HOH A 47 747 264 HOH HOH . O 4 HOH A 48 748 209 HOH HOH . O 4 HOH A 49 749 79 HOH HOH . O 4 HOH A 50 750 246 HOH HOH . O 4 HOH A 51 751 8 HOH HOH . O 4 HOH A 52 752 110 HOH HOH . O 4 HOH A 53 753 62 HOH HOH . O 4 HOH A 54 754 142 HOH HOH . O 4 HOH A 55 755 115 HOH HOH . O 4 HOH A 56 756 285 HOH HOH . O 4 HOH A 57 757 241 HOH HOH . O 4 HOH A 58 758 16 HOH HOH . O 4 HOH A 59 759 217 HOH HOH . O 4 HOH A 60 760 242 HOH HOH . O 4 HOH A 61 761 178 HOH HOH . O 4 HOH A 62 762 189 HOH HOH . O 4 HOH A 63 763 44 HOH HOH . O 4 HOH A 64 764 126 HOH HOH . O 4 HOH A 65 765 272 HOH HOH . O 4 HOH A 66 766 76 HOH HOH . O 4 HOH A 67 767 160 HOH HOH . O 4 HOH A 68 768 1 HOH HOH . O 4 HOH A 69 769 127 HOH HOH . O 4 HOH A 70 770 14 HOH HOH . O 4 HOH A 71 771 154 HOH HOH . O 4 HOH A 72 772 23 HOH HOH . O 4 HOH A 73 773 222 HOH HOH . O 4 HOH A 74 774 49 HOH HOH . O 4 HOH A 75 775 7 HOH HOH . O 4 HOH A 76 776 29 HOH HOH . O 4 HOH A 77 777 155 HOH HOH . O 4 HOH A 78 778 267 HOH HOH . O 4 HOH A 79 779 165 HOH HOH . O 4 HOH A 80 780 190 HOH HOH . O 4 HOH A 81 781 266 HOH HOH . O 4 HOH A 82 782 233 HOH HOH . O 4 HOH A 83 783 55 HOH HOH . O 4 HOH A 84 784 6 HOH HOH . O 4 HOH A 85 785 88 HOH HOH . O 4 HOH A 86 786 135 HOH HOH . O 4 HOH A 87 787 19 HOH HOH . O 4 HOH A 88 788 51 HOH HOH . O 4 HOH A 89 789 179 HOH HOH . O 4 HOH A 90 790 265 HOH HOH . O 4 HOH A 91 791 17 HOH HOH . O 4 HOH A 92 792 78 HOH HOH . O 4 HOH A 93 793 117 HOH HOH . O 4 HOH A 94 794 212 HOH HOH . O 4 HOH A 95 795 39 HOH HOH . O 4 HOH A 96 796 169 HOH HOH . O 4 HOH A 97 797 199 HOH HOH . O 4 HOH A 98 798 143 HOH HOH . O 4 HOH A 99 799 12 HOH HOH . O 4 HOH A 100 800 40 HOH HOH . O 4 HOH A 101 801 289 HOH HOH . O 4 HOH A 102 802 52 HOH HOH . O 4 HOH A 103 803 85 HOH HOH . O 4 HOH A 104 804 112 HOH HOH . O 4 HOH A 105 805 24 HOH HOH . O 4 HOH A 106 806 101 HOH HOH . O 4 HOH A 107 807 173 HOH HOH . O 4 HOH A 108 808 236 HOH HOH . O 4 HOH A 109 809 139 HOH HOH . O 4 HOH A 110 810 9 HOH HOH . O 4 HOH A 111 811 146 HOH HOH . O 4 HOH A 112 812 98 HOH HOH . O 4 HOH A 113 813 133 HOH HOH . O 4 HOH A 114 814 48 HOH HOH . O 4 HOH A 115 815 82 HOH HOH . O 4 HOH A 116 816 130 HOH HOH . O 4 HOH A 117 817 86 HOH HOH . O 4 HOH A 118 818 215 HOH HOH . O 4 HOH A 119 819 71 HOH HOH . O 4 HOH A 120 820 3 HOH HOH . O 4 HOH A 121 821 214 HOH HOH . O 4 HOH A 122 822 27 HOH HOH . O 4 HOH A 123 823 57 HOH HOH . O 4 HOH A 124 824 53 HOH HOH . O 4 HOH A 125 825 240 HOH HOH . O 4 HOH A 126 826 196 HOH HOH . O 4 HOH A 127 827 113 HOH HOH . O 4 HOH A 128 828 93 HOH HOH . O 4 HOH A 129 829 114 HOH HOH . O 4 HOH A 130 830 208 HOH HOH . O 4 HOH A 131 831 171 HOH HOH . O 4 HOH A 132 832 211 HOH HOH . O 4 HOH A 133 833 32 HOH HOH . O 4 HOH A 134 834 141 HOH HOH . O 4 HOH A 135 835 92 HOH HOH . O 4 HOH A 136 836 249 HOH HOH . O 4 HOH A 137 837 42 HOH HOH . O 4 HOH A 138 838 293 HOH HOH . O 4 HOH A 139 839 284 HOH HOH . O 4 HOH A 140 840 66 HOH HOH . O 4 HOH A 141 841 269 HOH HOH . O 4 HOH A 142 842 220 HOH HOH . O 4 HOH A 143 843 206 HOH HOH . O 4 HOH A 144 844 73 HOH HOH . O 4 HOH A 145 845 94 HOH HOH . O 4 HOH A 146 846 213 HOH HOH . O 4 HOH A 147 847 124 HOH HOH . O 4 HOH A 148 848 286 HOH HOH . O 4 HOH A 149 849 218 HOH HOH . O 4 HOH A 150 850 238 HOH HOH . O 4 HOH A 151 851 292 HOH HOH . O 4 HOH A 152 852 80 HOH HOH . O 4 HOH A 153 853 279 HOH HOH . O 4 HOH A 154 854 263 HOH HOH . O 4 HOH A 155 855 125 HOH HOH . O 4 HOH A 156 856 224 HOH HOH . O 4 HOH A 157 857 205 HOH HOH . P 4 HOH B 1 701 91 HOH HOH . P 4 HOH B 2 702 227 HOH HOH . P 4 HOH B 3 703 255 HOH HOH . P 4 HOH B 4 704 259 HOH HOH . P 4 HOH B 5 705 247 HOH HOH . P 4 HOH B 6 706 131 HOH HOH . P 4 HOH B 7 707 251 HOH HOH . P 4 HOH B 8 708 167 HOH HOH . P 4 HOH B 9 709 75 HOH HOH . P 4 HOH B 10 710 15 HOH HOH . P 4 HOH B 11 711 120 HOH HOH . P 4 HOH B 12 712 104 HOH HOH . P 4 HOH B 13 713 243 HOH HOH . P 4 HOH B 14 714 274 HOH HOH . P 4 HOH B 15 715 122 HOH HOH . P 4 HOH B 16 716 156 HOH HOH . P 4 HOH B 17 717 11 HOH HOH . P 4 HOH B 18 718 257 HOH HOH . P 4 HOH B 19 719 234 HOH HOH . P 4 HOH B 20 720 121 HOH HOH . P 4 HOH B 21 721 174 HOH HOH . P 4 HOH B 22 722 96 HOH HOH . P 4 HOH B 23 723 58 HOH HOH . P 4 HOH B 24 724 33 HOH HOH . P 4 HOH B 25 725 256 HOH HOH . P 4 HOH B 26 726 41 HOH HOH . P 4 HOH B 27 727 38 HOH HOH . P 4 HOH B 28 728 25 HOH HOH . P 4 HOH B 29 729 295 HOH HOH . P 4 HOH B 30 730 153 HOH HOH . P 4 HOH B 31 731 260 HOH HOH . P 4 HOH B 32 732 253 HOH HOH . P 4 HOH B 33 733 129 HOH HOH . P 4 HOH B 34 734 149 HOH HOH . P 4 HOH B 35 735 191 HOH HOH . P 4 HOH B 36 736 151 HOH HOH . P 4 HOH B 37 737 290 HOH HOH . P 4 HOH B 38 738 283 HOH HOH . P 4 HOH B 39 739 132 HOH HOH . P 4 HOH B 40 740 157 HOH HOH . P 4 HOH B 41 741 166 HOH HOH . P 4 HOH B 42 742 67 HOH HOH . P 4 HOH B 43 743 248 HOH HOH . P 4 HOH B 44 744 180 HOH HOH . P 4 HOH B 45 745 163 HOH HOH . P 4 HOH B 46 746 187 HOH HOH . P 4 HOH B 47 747 186 HOH HOH . P 4 HOH B 48 748 106 HOH HOH . P 4 HOH B 49 749 270 HOH HOH . P 4 HOH B 50 750 200 HOH HOH . P 4 HOH B 51 751 105 HOH HOH . P 4 HOH B 52 752 46 HOH HOH . P 4 HOH B 53 753 119 HOH HOH . P 4 HOH B 54 754 59 HOH HOH . P 4 HOH B 55 755 28 HOH HOH . P 4 HOH B 56 756 111 HOH HOH . P 4 HOH B 57 757 72 HOH HOH . P 4 HOH B 58 758 145 HOH HOH . P 4 HOH B 59 759 45 HOH HOH . P 4 HOH B 60 760 102 HOH HOH . P 4 HOH B 61 761 170 HOH HOH . P 4 HOH B 62 762 10 HOH HOH . P 4 HOH B 63 763 68 HOH HOH . P 4 HOH B 64 764 128 HOH HOH . P 4 HOH B 65 765 159 HOH HOH . P 4 HOH B 66 766 278 HOH HOH . P 4 HOH B 67 767 168 HOH HOH . P 4 HOH B 68 768 81 HOH HOH . P 4 HOH B 69 769 47 HOH HOH . P 4 HOH B 70 770 182 HOH HOH . P 4 HOH B 71 771 18 HOH HOH . P 4 HOH B 72 772 77 HOH HOH . P 4 HOH B 73 773 134 HOH HOH . P 4 HOH B 74 774 137 HOH HOH . P 4 HOH B 75 775 50 HOH HOH . P 4 HOH B 76 776 192 HOH HOH . P 4 HOH B 77 777 193 HOH HOH . P 4 HOH B 78 778 261 HOH HOH . P 4 HOH B 79 779 175 HOH HOH . P 4 HOH B 80 780 282 HOH HOH . P 4 HOH B 81 781 229 HOH HOH . P 4 HOH B 82 782 43 HOH HOH . P 4 HOH B 83 783 183 HOH HOH . P 4 HOH B 84 784 97 HOH HOH . P 4 HOH B 85 785 185 HOH HOH . P 4 HOH B 86 786 37 HOH HOH . P 4 HOH B 87 787 20 HOH HOH . P 4 HOH B 88 788 194 HOH HOH . P 4 HOH B 89 789 239 HOH HOH . P 4 HOH B 90 790 203 HOH HOH . P 4 HOH B 91 791 22 HOH HOH . P 4 HOH B 92 792 13 HOH HOH . P 4 HOH B 93 793 144 HOH HOH . P 4 HOH B 94 794 26 HOH HOH . P 4 HOH B 95 795 107 HOH HOH . P 4 HOH B 96 796 184 HOH HOH . P 4 HOH B 97 797 230 HOH HOH . P 4 HOH B 98 798 21 HOH HOH . P 4 HOH B 99 799 2 HOH HOH . P 4 HOH B 100 800 35 HOH HOH . P 4 HOH B 101 801 152 HOH HOH . P 4 HOH B 102 802 197 HOH HOH . P 4 HOH B 103 803 273 HOH HOH . P 4 HOH B 104 804 90 HOH HOH . P 4 HOH B 105 805 109 HOH HOH . P 4 HOH B 106 806 225 HOH HOH . P 4 HOH B 107 807 201 HOH HOH . P 4 HOH B 108 808 288 HOH HOH . P 4 HOH B 109 809 254 HOH HOH . P 4 HOH B 110 810 108 HOH HOH . P 4 HOH B 111 811 84 HOH HOH . P 4 HOH B 112 812 99 HOH HOH . P 4 HOH B 113 813 100 HOH HOH . P 4 HOH B 114 814 69 HOH HOH . P 4 HOH B 115 815 103 HOH HOH . P 4 HOH B 116 816 268 HOH HOH . P 4 HOH B 117 817 95 HOH HOH . P 4 HOH B 118 818 235 HOH HOH . P 4 HOH B 119 819 271 HOH HOH . P 4 HOH B 120 820 63 HOH HOH . P 4 HOH B 121 821 87 HOH HOH . P 4 HOH B 122 822 64 HOH HOH . P 4 HOH B 123 823 83 HOH HOH . P 4 HOH B 124 824 116 HOH HOH . P 4 HOH B 125 825 258 HOH HOH . P 4 HOH B 126 826 89 HOH HOH . P 4 HOH B 127 827 294 HOH HOH . P 4 HOH B 128 828 275 HOH HOH . P 4 HOH B 129 829 164 HOH HOH . P 4 HOH B 130 830 4 HOH HOH . P 4 HOH B 131 831 281 HOH HOH . P 4 HOH B 132 832 276 HOH HOH . P 4 HOH B 133 833 226 HOH HOH . P 4 HOH B 134 834 177 HOH HOH . P 4 HOH B 135 835 287 HOH HOH . P 4 HOH B 136 836 207 HOH HOH . P 4 HOH B 137 837 204 HOH HOH . P 4 HOH B 138 838 221 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . N 3 24.041 53.728 49.033 1 52.62 ? C1 GOL 608 B 1 HETATM 2 O O1 GOL . . . N 3 23.907 52.635 49.92 1 46.39 ? O1 GOL 608 B 1 HETATM 3 C C2 GOL . . . N 3 25.377 53.681 48.291 1 47.56 ? C2 GOL 608 B 1 HETATM 4 O O2 GOL . . . N 3 26.398 53.921 49.248 1 53.73 ? O2 GOL 608 B 1 HETATM 5 C C3 GOL . . . N 3 25.37 54.763 47.204 1 46.74 ? C3 GOL 608 B 1 HETATM 6 O O3 GOL . . . N 3 26.173 54.44 46.079 1 46.76 ? O3 GOL 608 B 1 # _model_server_stats.io_time_ms 43 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 278 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 6 #