data_5Z62 # _model_server_result.job_id VERl5SuSdTWjyjBLNMzH_Q _model_server_result.datetime_utc '2024-11-26 05:51:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5z62 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"W","auth_seq_id":302}' # _entry.id 5Z62 # _exptl.entry_id 5Z62 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 749.073 _entity.id 18 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-Dioleoyl-sn-glycero-3-phosphoethanolamine _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5Z62 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 5Z62 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetradecameric _pdbx_struct_assembly.oligomeric_count 14 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 18 S N N ? 18 V N N ? 18 W N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 H SG CYS 26 H CYS 30 1_555 H SG CYS 61 H CYS 65 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? disulf ? disulf2 H SG CYS 36 H CYS 40 1_555 H SG CYS 50 H CYS 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.875 ? metalc ? metalc1 A NE2 HIS 61 A HIS 61 1_555 Q FE HEA . A HEA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.673 ? metalc ? metalc2 A ND1 HIS 240 A HIS 240 1_555 O CU CU . A CU 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.079 ? metalc ? metalc3 A NE2 HIS 290 A HIS 290 1_555 O CU CU . A CU 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.099 ? metalc ? metalc4 A NE2 HIS 291 A HIS 291 1_555 O CU CU . A CU 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.093 ? metalc ? metalc5 A OD2 ASP 369 A ASP 369 1_555 P MG MG . A MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.104 ? metalc ? metalc6 A NE2 HIS 376 A HIS 376 1_555 R FE HEA . A HEA 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.791 ? metalc ? metalc7 A NE2 HIS 378 A HIS 378 1_555 Q FE HEA . A HEA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.643 ? metalc ? metalc8 B ND1 HIS 161 B HIS 161 1_555 T CU CU . B CU 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.162 ? metalc ? metalc9 B SG CYS 196 B CYS 196 1_555 T CU CU . B CU 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.441 ? metalc ? metalc10 B SG CYS 196 B CYS 196 1_555 U CU CU . B CU 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.401 ? metalc ? metalc11 B OE1 GLU 198 B GLU 198 1_555 P MG MG . A MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.37 ? metalc ? metalc12 B SG CYS 200 B CYS 200 1_555 T CU CU . B CU 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.397 ? metalc ? metalc13 B SG CYS 200 B CYS 200 1_555 U CU CU . B CU 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.384 ? metalc ? metalc14 B SD MET 207 B MET 207 1_555 U CU CU . B CU 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.476 ? metalc ? metalc15 F SG CYS 60 F CYS 91 1_555 Y ZN ZN . F ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.991 ? metalc ? metalc16 F SG CYS 62 F CYS 93 1_555 Y ZN ZN . F ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.431 ? metalc ? metalc17 F SG CYS 82 F CYS 113 1_555 Y ZN ZN . F ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.5 ? covale ? covale1 H O CYS 50 H CYS 54 1_555 H N TRP 52 H TRP 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? # _chem_comp.formula 'C41 H83 N O8 P 1' _chem_comp.formula_weight 749.073 _chem_comp.id PEE _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-Dioleoyl-sn-glycero-3-phosphoethanolamine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms DOPE # _atom_sites.entry_id 5Z62 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code O 15 CU A 1 601 517 CU CU . P 16 MG A 1 602 518 MG MG . Q 17 HEA A 1 603 515 HEA HEA . R 17 HEA A 1 604 516 HEA HEA . S 18 PEE A 1 605 1 PEE PEE . T 15 CU B 1 301 228 CU CU . U 15 CU B 1 302 229 CU CU . V 18 PEE C 1 301 2 PEE PEE . W 18 PEE C 1 302 3 PEE PEE . X 19 CDL C 1 303 1 CDL CDL . Y 20 ZN F 1 201 130 ZN ZN . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C2 PEE . . . W 18 297.174 322.07 233.395 1 90.75 ? C2 PEE 302 C 1 HETATM 2 C C1 PEE . . . W 18 296.143 322.469 232.349 1 90.75 ? C1 PEE 302 C 1 HETATM 3 N N PEE . . . W 18 291.889 324.142 228.451 1 90.75 ? N PEE 302 C 1 HETATM 4 C C3 PEE . . . W 18 297.645 320.646 233.176 1 90.75 ? C3 PEE 302 C 1 HETATM 5 C C4 PEE . . . W 18 294.195 324.116 229.351 1 90.75 ? C4 PEE 302 C 1 HETATM 6 C C5 PEE . . . W 18 293.315 323.885 228.13 1 90.75 ? C5 PEE 302 C 1 HETATM 7 C C10 PEE . . . W 18 297.681 322.658 235.601 1 90.75 ? C10 PEE 302 C 1 HETATM 8 C C11 PEE . . . W 18 298.183 321.792 236.728 1 90.75 ? C11 PEE 302 C 1 HETATM 9 C C12 PEE . . . W 18 299.607 322.166 237.113 1 90.75 ? C12 PEE 302 C 1 HETATM 10 C C13 PEE . . . W 18 300.636 321.712 236.094 1 90.75 ? C13 PEE 302 C 1 HETATM 11 C C14 PEE . . . W 18 302.027 321.76 236.71 1 90.75 ? C14 PEE 302 C 1 HETATM 12 C C15 PEE . . . W 18 302.149 320.726 237.822 1 90.75 ? C15 PEE 302 C 1 HETATM 13 C C16 PEE . . . W 18 303.407 320.933 238.655 1 90.75 ? C16 PEE 302 C 1 HETATM 14 C C17 PEE . . . W 18 304.656 320.913 237.785 1 90.75 ? C17 PEE 302 C 1 HETATM 15 C C18 PEE . . . W 18 305.357 319.562 237.816 1 90.75 ? C18 PEE 302 C 1 HETATM 16 C C19 PEE . . . W 18 306.389 319.493 238.933 1 90.75 ? C19 PEE 302 C 1 HETATM 17 C C20 PEE . . . W 18 305.934 318.546 240.035 1 90.75 ? C20 PEE 302 C 1 HETATM 18 C C21 PEE . . . W 18 305.584 319.305 241.309 1 90.75 ? C21 PEE 302 C 1 HETATM 19 C C22 PEE . . . W 18 306.719 319.256 242.328 1 90.75 ? C22 PEE 302 C 1 HETATM 20 C C23 PEE . . . W 18 306.354 320.011 243.603 1 90.75 ? C23 PEE 302 C 1 HETATM 21 C C24 PEE . . . W 18 305.052 319.506 244.222 1 90.75 ? C24 PEE 302 C 1 HETATM 22 C C25 PEE . . . W 18 305.31 318.593 245.414 1 90.75 ? C25 PEE 302 C 1 HETATM 23 C C26 PEE . . . W 18 304.032 317.909 245.883 1 90.75 ? C26 PEE 302 C 1 HETATM 24 C C27 PEE . . . W 18 303.059 318.894 246.491 1 90.75 ? C27 PEE 302 C 1 HETATM 25 C C30 PEE . . . W 18 299.863 320.537 232.171 1 90.75 ? C30 PEE 302 C 1 HETATM 26 C C31 PEE . . . W 18 300.666 319.459 231.501 1 90.75 ? C31 PEE 302 C 1 HETATM 27 C C32 PEE . . . W 18 301.77 318.994 232.437 1 90.75 ? C32 PEE 302 C 1 HETATM 28 C C33 PEE . . . W 18 301.202 318.326 233.68 1 90.75 ? C33 PEE 302 C 1 HETATM 29 C C34 PEE . . . W 18 302.165 318.467 234.852 1 90.75 ? C34 PEE 302 C 1 HETATM 30 C C35 PEE . . . W 18 303.364 317.536 234.722 1 90.75 ? C35 PEE 302 C 1 HETATM 31 C C36 PEE . . . W 18 303.185 316.283 235.566 1 90.75 ? C36 PEE 302 C 1 HETATM 32 C C37 PEE . . . W 18 303.084 316.628 237.047 1 90.75 ? C37 PEE 302 C 1 HETATM 33 C C38 PEE . . . W 18 301.814 316.059 237.673 1 90.75 ? C38 PEE 302 C 1 HETATM 34 C C39 PEE . . . W 18 301.738 314.544 237.495 1 90.75 ? C39 PEE 302 C 1 HETATM 35 C C40 PEE . . . W 18 300.974 313.845 238.623 1 90.75 ? C40 PEE 302 C 1 HETATM 36 C C41 PEE . . . W 18 301.296 314.401 240.011 1 90.75 ? C41 PEE 302 C 1 HETATM 37 C C42 PEE . . . W 18 302.136 313.466 240.882 1 90.75 ? C42 PEE 302 C 1 HETATM 38 C C43 PEE . . . W 18 303.586 313.341 240.417 1 90.75 ? C43 PEE 302 C 1 HETATM 39 C C44 PEE . . . W 18 304.25 314.7 240.218 1 90.75 ? C44 PEE 302 C 1 HETATM 40 C C45 PEE . . . W 18 304.49 315.415 241.543 1 90.75 ? C45 PEE 302 C 1 HETATM 41 C C46 PEE . . . W 18 305.584 314.716 242.337 1 90.75 ? C46 PEE 302 C 1 HETATM 42 C C47 PEE . . . W 18 305.739 315.339 243.703 1 90.75 ? C47 PEE 302 C 1 HETATM 43 O O4 PEE . . . W 18 298.111 323.78 235.424 1 90.75 ? O4 PEE 302 C 1 HETATM 44 O O5 PEE . . . W 18 300.398 321.394 232.84 1 90.75 ? O5 PEE 302 C 1 HETATM 45 O O2 PEE . . . W 18 296.654 322.148 234.715 1 90.75 ? O2 PEE 302 C 1 HETATM 46 O O3 PEE . . . W 18 298.432 320.59 232.002 1 90.75 ? O3 PEE 302 C 1 HETATM 47 O O1P PEE . . . W 18 296.455 321.141 229.351 1 90.75 ? O1P PEE 302 C 1 HETATM 48 O O2P PEE . . . W 18 296.772 323.659 228.806 1 90.75 ? O2P PEE 302 C 1 HETATM 49 O O3P PEE . . . W 18 296.852 322.822 231.171 1 90.75 ? O3P PEE 302 C 1 HETATM 50 O O4P PEE . . . W 18 294.68 322.866 229.822 1 90.75 ? O4P PEE 302 C 1 HETATM 51 P P PEE . . . W 18 296.249 322.587 229.708 1 90.75 ? P PEE 302 C 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 34 _model_server_stats.query_time_ms 308 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 51 #