data_5Z62
#
_model_server_result.job_id            kY7zc5Lk6T9OXBcaojpojA 
_model_server_result.datetime_utc      '2024-11-02 17:35:08' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5z62 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"W","auth_seq_id":302}' 
#
_entry.id    5Z62 
#
_exptl.entry_id    5Z62 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              749.073 
_entity.id                          18 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-Dioleoyl-sn-glycero-3-phosphoethanolamine 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5Z62 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5Z62 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    tetradecameric 
_pdbx_struct_assembly.oligomeric_count      14 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 18 S N N 
? 18 V N N 
? 18 W N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 H SG CYS 26 H CYS 30 1_555 H SG CYS 61 H CYS 65 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? 
disulf ? disulf2 H SG CYS 36 H CYS 40 1_555 H SG CYS 50 H CYS 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.875 ? 
metalc ? metalc1 A NE2 HIS 61 A HIS 61 1_555 Q FE HEA . A HEA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.673 ? 
metalc ? metalc2 A ND1 HIS 240 A HIS 240 1_555 O CU CU . A CU 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.079 ? 
metalc ? metalc3 A NE2 HIS 290 A HIS 290 1_555 O CU CU . A CU 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.099 ? 
metalc ? metalc4 A NE2 HIS 291 A HIS 291 1_555 O CU CU . A CU 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.093 ? 
metalc ? metalc5 A OD2 ASP 369 A ASP 369 1_555 P MG MG . A MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.104 ? 
metalc ? metalc6 A NE2 HIS 376 A HIS 376 1_555 R FE HEA . A HEA 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.791 ? 
metalc ? metalc7 A NE2 HIS 378 A HIS 378 1_555 Q FE HEA . A HEA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.643 ? 
metalc ? metalc8 B ND1 HIS 161 B HIS 161 1_555 T CU CU . B CU 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.162 ? 
metalc ? metalc9 B SG CYS 196 B CYS 196 1_555 T CU CU . B CU 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.441 ? 
metalc ? metalc10 B SG CYS 196 B CYS 196 1_555 U CU CU . B CU 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.401 ? 
metalc ? metalc11 B OE1 GLU 198 B GLU 198 1_555 P MG MG . A MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.37 ? 
metalc ? metalc12 B SG CYS 200 B CYS 200 1_555 T CU CU . B CU 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.397 ? 
metalc ? metalc13 B SG CYS 200 B CYS 200 1_555 U CU CU . B CU 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.384 ? 
metalc ? metalc14 B SD MET 207 B MET 207 1_555 U CU CU . B CU 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.476 ? 
metalc ? metalc15 F SG CYS 60 F CYS 91 1_555 Y ZN ZN . F ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.991 ? 
metalc ? metalc16 F SG CYS 62 F CYS 93 1_555 Y ZN ZN . F ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.431 ? 
metalc ? metalc17 F SG CYS 82 F CYS 113 1_555 Y ZN ZN . F ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.5 ? 
covale ? covale1 H O CYS 50 H CYS 54 1_555 H N TRP 52 H TRP 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? 
#
_chem_comp.formula           'C41 H83 N O8 P 1' 
_chem_comp.formula_weight    749.073 
_chem_comp.id                PEE 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-Dioleoyl-sn-glycero-3-phosphoethanolamine 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     DOPE 
#
_atom_sites.entry_id                     5Z62 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
O 15 CU A 1 601 517 CU CU . 
P 16 MG A 1 602 518 MG MG . 
Q 17 HEA A 1 603 515 HEA HEA . 
R 17 HEA A 1 604 516 HEA HEA . 
S 18 PEE A 1 605 1 PEE PEE . 
T 15 CU B 1 301 228 CU CU . 
U 15 CU B 1 302 229 CU CU . 
V 18 PEE C 1 301 2 PEE PEE . 
W 18 PEE C 1 302 3 PEE PEE . 
X 19 CDL C 1 303 1 CDL CDL . 
Y 20 ZN F 1 201 130 ZN ZN . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C2 PEE . . . W 18 297.174 322.07 233.395 1 90.75 ? C2 PEE 302 C 1 
HETATM 2 C C1 PEE . . . W 18 296.143 322.469 232.349 1 90.75 ? C1 PEE 302 C 1 
HETATM 3 N N PEE . . . W 18 291.889 324.142 228.451 1 90.75 ? N PEE 302 C 1 
HETATM 4 C C3 PEE . . . W 18 297.645 320.646 233.176 1 90.75 ? C3 PEE 302 C 1 
HETATM 5 C C4 PEE . . . W 18 294.195 324.116 229.351 1 90.75 ? C4 PEE 302 C 1 
HETATM 6 C C5 PEE . . . W 18 293.315 323.885 228.13 1 90.75 ? C5 PEE 302 C 1 
HETATM 7 C C10 PEE . . . W 18 297.681 322.658 235.601 1 90.75 ? C10 PEE 302 C 1 
HETATM 8 C C11 PEE . . . W 18 298.183 321.792 236.728 1 90.75 ? C11 PEE 302 C 1 
HETATM 9 C C12 PEE . . . W 18 299.607 322.166 237.113 1 90.75 ? C12 PEE 302 C 1 
HETATM 10 C C13 PEE . . . W 18 300.636 321.712 236.094 1 90.75 ? C13 PEE 302 C 1 
HETATM 11 C C14 PEE . . . W 18 302.027 321.76 236.71 1 90.75 ? C14 PEE 302 C 1 
HETATM 12 C C15 PEE . . . W 18 302.149 320.726 237.822 1 90.75 ? C15 PEE 302 C 1 
HETATM 13 C C16 PEE . . . W 18 303.407 320.933 238.655 1 90.75 ? C16 PEE 302 C 1 
HETATM 14 C C17 PEE . . . W 18 304.656 320.913 237.785 1 90.75 ? C17 PEE 302 C 1 
HETATM 15 C C18 PEE . . . W 18 305.357 319.562 237.816 1 90.75 ? C18 PEE 302 C 1 
HETATM 16 C C19 PEE . . . W 18 306.389 319.493 238.933 1 90.75 ? C19 PEE 302 C 1 
HETATM 17 C C20 PEE . . . W 18 305.934 318.546 240.035 1 90.75 ? C20 PEE 302 C 1 
HETATM 18 C C21 PEE . . . W 18 305.584 319.305 241.309 1 90.75 ? C21 PEE 302 C 1 
HETATM 19 C C22 PEE . . . W 18 306.719 319.256 242.328 1 90.75 ? C22 PEE 302 C 1 
HETATM 20 C C23 PEE . . . W 18 306.354 320.011 243.603 1 90.75 ? C23 PEE 302 C 1 
HETATM 21 C C24 PEE . . . W 18 305.052 319.506 244.222 1 90.75 ? C24 PEE 302 C 1 
HETATM 22 C C25 PEE . . . W 18 305.31 318.593 245.414 1 90.75 ? C25 PEE 302 C 1 
HETATM 23 C C26 PEE . . . W 18 304.032 317.909 245.883 1 90.75 ? C26 PEE 302 C 1 
HETATM 24 C C27 PEE . . . W 18 303.059 318.894 246.491 1 90.75 ? C27 PEE 302 C 1 
HETATM 25 C C30 PEE . . . W 18 299.863 320.537 232.171 1 90.75 ? C30 PEE 302 C 1 
HETATM 26 C C31 PEE . . . W 18 300.666 319.459 231.501 1 90.75 ? C31 PEE 302 C 1 
HETATM 27 C C32 PEE . . . W 18 301.77 318.994 232.437 1 90.75 ? C32 PEE 302 C 1 
HETATM 28 C C33 PEE . . . W 18 301.202 318.326 233.68 1 90.75 ? C33 PEE 302 C 1 
HETATM 29 C C34 PEE . . . W 18 302.165 318.467 234.852 1 90.75 ? C34 PEE 302 C 1 
HETATM 30 C C35 PEE . . . W 18 303.364 317.536 234.722 1 90.75 ? C35 PEE 302 C 1 
HETATM 31 C C36 PEE . . . W 18 303.185 316.283 235.566 1 90.75 ? C36 PEE 302 C 1 
HETATM 32 C C37 PEE . . . W 18 303.084 316.628 237.047 1 90.75 ? C37 PEE 302 C 1 
HETATM 33 C C38 PEE . . . W 18 301.814 316.059 237.673 1 90.75 ? C38 PEE 302 C 1 
HETATM 34 C C39 PEE . . . W 18 301.738 314.544 237.495 1 90.75 ? C39 PEE 302 C 1 
HETATM 35 C C40 PEE . . . W 18 300.974 313.845 238.623 1 90.75 ? C40 PEE 302 C 1 
HETATM 36 C C41 PEE . . . W 18 301.296 314.401 240.011 1 90.75 ? C41 PEE 302 C 1 
HETATM 37 C C42 PEE . . . W 18 302.136 313.466 240.882 1 90.75 ? C42 PEE 302 C 1 
HETATM 38 C C43 PEE . . . W 18 303.586 313.341 240.417 1 90.75 ? C43 PEE 302 C 1 
HETATM 39 C C44 PEE . . . W 18 304.25 314.7 240.218 1 90.75 ? C44 PEE 302 C 1 
HETATM 40 C C45 PEE . . . W 18 304.49 315.415 241.543 1 90.75 ? C45 PEE 302 C 1 
HETATM 41 C C46 PEE . . . W 18 305.584 314.716 242.337 1 90.75 ? C46 PEE 302 C 1 
HETATM 42 C C47 PEE . . . W 18 305.739 315.339 243.703 1 90.75 ? C47 PEE 302 C 1 
HETATM 43 O O4 PEE . . . W 18 298.111 323.78 235.424 1 90.75 ? O4 PEE 302 C 1 
HETATM 44 O O5 PEE . . . W 18 300.398 321.394 232.84 1 90.75 ? O5 PEE 302 C 1 
HETATM 45 O O2 PEE . . . W 18 296.654 322.148 234.715 1 90.75 ? O2 PEE 302 C 1 
HETATM 46 O O3 PEE . . . W 18 298.432 320.59 232.002 1 90.75 ? O3 PEE 302 C 1 
HETATM 47 O O1P PEE . . . W 18 296.455 321.141 229.351 1 90.75 ? O1P PEE 302 C 1 
HETATM 48 O O2P PEE . . . W 18 296.772 323.659 228.806 1 90.75 ? O2P PEE 302 C 1 
HETATM 49 O O3P PEE . . . W 18 296.852 322.822 231.171 1 90.75 ? O3P PEE 302 C 1 
HETATM 50 O O4P PEE . . . W 18 294.68 322.866 229.822 1 90.75 ? O4P PEE 302 C 1 
HETATM 51 P P PEE . . . W 18 296.249 322.587 229.708 1 90.75 ? P PEE 302 C 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    40 
_model_server_stats.query_time_ms           310 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           51 
#