data_5Z62 # _model_server_result.job_id PMJlDYtp4BKmpsImADV0xA _model_server_result.datetime_utc '2024-11-29 17:05:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5z62 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"Q","auth_seq_id":603}' # _entry.id 5Z62 # _exptl.entry_id 5Z62 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 852.837 _entity.id 17 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description HEME-A _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5Z62 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 5Z62 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetradecameric _pdbx_struct_assembly.oligomeric_count 14 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 17 Q N N ? 17 R N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 H SG CYS 26 H CYS 30 1_555 H SG CYS 61 H CYS 65 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? disulf ? disulf2 H SG CYS 36 H CYS 40 1_555 H SG CYS 50 H CYS 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.875 ? metalc ? metalc1 A NE2 HIS 61 A HIS 61 1_555 Q FE HEA . A HEA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.673 ? metalc ? metalc2 A ND1 HIS 240 A HIS 240 1_555 O CU CU . A CU 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.079 ? metalc ? metalc3 A NE2 HIS 290 A HIS 290 1_555 O CU CU . A CU 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.099 ? metalc ? metalc4 A NE2 HIS 291 A HIS 291 1_555 O CU CU . A CU 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.093 ? metalc ? metalc5 A OD2 ASP 369 A ASP 369 1_555 P MG MG . A MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.104 ? metalc ? metalc6 A NE2 HIS 376 A HIS 376 1_555 R FE HEA . A HEA 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.791 ? metalc ? metalc7 A NE2 HIS 378 A HIS 378 1_555 Q FE HEA . A HEA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.643 ? metalc ? metalc8 B ND1 HIS 161 B HIS 161 1_555 T CU CU . B CU 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.162 ? metalc ? metalc9 B SG CYS 196 B CYS 196 1_555 T CU CU . B CU 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.441 ? metalc ? metalc10 B SG CYS 196 B CYS 196 1_555 U CU CU . B CU 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.401 ? metalc ? metalc11 B OE1 GLU 198 B GLU 198 1_555 P MG MG . A MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.37 ? metalc ? metalc12 B SG CYS 200 B CYS 200 1_555 T CU CU . B CU 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.397 ? metalc ? metalc13 B SG CYS 200 B CYS 200 1_555 U CU CU . B CU 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.384 ? metalc ? metalc14 B SD MET 207 B MET 207 1_555 U CU CU . B CU 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.476 ? metalc ? metalc15 F SG CYS 60 F CYS 91 1_555 Y ZN ZN . F ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.991 ? metalc ? metalc16 F SG CYS 62 F CYS 93 1_555 Y ZN ZN . F ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.431 ? metalc ? metalc17 F SG CYS 82 F CYS 113 1_555 Y ZN ZN . F ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.5 ? covale ? covale1 H O CYS 50 H CYS 54 1_555 H N TRP 52 H TRP 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? # _chem_comp.formula 'C49 H56 Fe N4 O6' _chem_comp.formula_weight 852.837 _chem_comp.id HEA _chem_comp.mon_nstd_flag . _chem_comp.name HEME-A _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5Z62 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code O 15 CU A 1 601 517 CU CU . P 16 MG A 1 602 518 MG MG . Q 17 HEA A 1 603 515 HEA HEA . R 17 HEA A 1 604 516 HEA HEA . S 18 PEE A 1 605 1 PEE PEE . T 15 CU B 1 301 228 CU CU . U 15 CU B 1 302 229 CU CU . V 18 PEE C 1 301 2 PEE PEE . W 18 PEE C 1 302 3 PEE PEE . X 19 CDL C 1 303 1 CDL CDL . Y 20 ZN F 1 201 130 ZN ZN . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 FE FE HEA . . . Q 17 336.294 326.6 244.913 1 54.04 ? FE HEA 603 A 1 HETATM 2 C CHA HEA . . . Q 17 334.91 327.94 242.053 1 54.04 ? CHA HEA 603 A 1 HETATM 3 C CHB HEA . . . Q 17 339.425 326.307 243.485 1 54.04 ? CHB HEA 603 A 1 HETATM 4 C CHC HEA . . . Q 17 337.591 325.306 247.866 1 54.04 ? CHC HEA 603 A 1 HETATM 5 C CHD HEA . . . Q 17 333.287 327.192 246.567 1 54.04 ? CHD HEA 603 A 1 HETATM 6 N NA HEA . . . Q 17 336.962 326.809 243.069 1 54.04 ? NA HEA 603 A 1 HETATM 7 C C1A HEA . . . Q 17 336.35 327.795 242.174 1 54.04 ? C1A HEA 603 A 1 HETATM 8 C C2A HEA . . . Q 17 337.29 328.526 241.299 1 54.04 ? C2A HEA 603 A 1 HETATM 9 C C3A HEA . . . Q 17 338.603 328.038 241.722 1 54.04 ? C3A HEA 603 A 1 HETATM 10 C C4A HEA . . . Q 17 338.38 327.071 242.82 1 54.04 ? C4A HEA 603 A 1 HETATM 11 C CMA HEA . . . Q 17 339.877 328.513 241.139 1 54.04 ? CMA HEA 603 A 1 HETATM 12 O OMA HEA . . . Q 17 340.941 328.398 241.706 1 54.04 ? OMA HEA 603 A 1 HETATM 13 C CAA HEA . . . Q 17 336.988 329.537 240.228 1 54.04 ? CAA HEA 603 A 1 HETATM 14 C CBA HEA . . . Q 17 337.102 328.774 238.917 1 54.04 ? CBA HEA 603 A 1 HETATM 15 C CGA HEA . . . Q 17 336.626 329.618 237.772 1 54.04 ? CGA HEA 603 A 1 HETATM 16 O O1A HEA . . . Q 17 337.068 329.379 236.63 1 54.04 ? O1A HEA 603 A 1 HETATM 17 O O2A HEA . . . Q 17 335.808 330.525 238.013 1 54.04 ? O2A HEA 603 A 1 HETATM 18 N NB HEA . . . Q 17 338.182 325.927 245.557 1 54.04 ? NB HEA 603 A 1 HETATM 19 C C1B HEA . . . Q 17 339.336 325.883 244.874 1 54.04 ? C1B HEA 603 A 1 HETATM 20 C C2B HEA . . . Q 17 340.51 325.35 245.591 1 54.04 ? C2B HEA 603 A 1 HETATM 21 C C3B HEA . . . Q 17 339.965 325.048 246.912 1 54.04 ? C3B HEA 603 A 1 HETATM 22 C C4B HEA . . . Q 17 338.542 325.442 246.763 1 54.04 ? C4B HEA 603 A 1 HETATM 23 C CMB HEA . . . Q 17 341.914 325.179 245.092 1 54.04 ? CMB HEA 603 A 1 HETATM 24 N NC HEA . . . Q 17 335.571 326.304 246.861 1 54.04 ? NC HEA 603 A 1 HETATM 25 C C1C HEA . . . Q 17 336.213 325.787 247.925 1 54.04 ? C1C HEA 603 A 1 HETATM 26 C C2C HEA . . . Q 17 335.451 325.694 249.188 1 54.04 ? C2C HEA 603 A 1 HETATM 27 C C3C HEA . . . Q 17 334.172 326.254 248.774 1 54.04 ? C3C HEA 603 A 1 HETATM 28 C C4C HEA . . . Q 17 334.36 326.6 247.357 1 54.04 ? C4C HEA 603 A 1 HETATM 29 C CMC HEA . . . Q 17 335.91 325.16 250.51 1 54.04 ? CMC HEA 603 A 1 HETATM 30 C CAC HEA . . . Q 17 332.946 326.472 249.572 1 54.04 ? CAC HEA 603 A 1 HETATM 31 C CBC HEA . . . Q 17 332.372 325.5 250.246 1 54.04 ? CBC HEA 603 A 1 HETATM 32 N ND HEA . . . Q 17 334.428 327.42 244.383 1 54.04 ? ND HEA 603 A 1 HETATM 33 C C1D HEA . . . Q 17 333.35 327.589 245.164 1 54.04 ? C1D HEA 603 A 1 HETATM 34 C C2D HEA . . . Q 17 332.181 328.218 244.524 1 54.04 ? C2D HEA 603 A 1 HETATM 35 C C3D HEA . . . Q 17 332.626 328.448 243.158 1 54.04 ? C3D HEA 603 A 1 HETATM 36 C C4D HEA . . . Q 17 334.018 327.936 243.207 1 54.04 ? C4D HEA 603 A 1 HETATM 37 C CMD HEA . . . Q 17 330.842 328.533 245.119 1 54.04 ? CMD HEA 603 A 1 HETATM 38 C CAD HEA . . . Q 17 331.809 329.103 242.071 1 54.04 ? CAD HEA 603 A 1 HETATM 39 C CBD HEA . . . Q 17 331.644 328.306 240.794 1 54.04 ? CBD HEA 603 A 1 HETATM 40 C CGD HEA . . . Q 17 331.474 329.327 239.702 1 54.04 ? CGD HEA 603 A 1 HETATM 41 O O1D HEA . . . Q 17 330.386 329.917 239.594 1 54.04 ? O1D HEA 603 A 1 HETATM 42 O O2D HEA . . . Q 17 332.438 329.556 238.95 1 54.04 ? O2D HEA 603 A 1 HETATM 43 C C11 HEA . . . Q 17 340.693 324.494 248.072 1 54.04 ? C11 HEA 603 A 1 HETATM 44 O O11 HEA . . . Q 17 340.414 325.263 249.241 1 54.04 ? O11 HEA 603 A 1 HETATM 45 C C12 HEA . . . Q 17 340.313 323.046 248.332 1 54.04 ? C12 HEA 603 A 1 HETATM 46 C C13 HEA . . . Q 17 340.784 322.648 249.72 1 54.04 ? C13 HEA 603 A 1 HETATM 47 C C14 HEA . . . Q 17 339.776 321.728 250.369 1 54.04 ? C14 HEA 603 A 1 HETATM 48 C C15 HEA . . . Q 17 339.168 322.067 251.516 1 54.04 ? C15 HEA 603 A 1 HETATM 49 C C16 HEA . . . Q 17 338.161 321.153 252.168 1 54.04 ? C16 HEA 603 A 1 HETATM 50 C C17 HEA . . . Q 17 338.592 319.708 252.002 1 54.04 ? C17 HEA 603 A 1 HETATM 51 C C18 HEA . . . Q 17 337.679 318.758 252.747 1 54.04 ? C18 HEA 603 A 1 HETATM 52 C C19 HEA . . . Q 17 338.134 317.993 253.752 1 54.04 ? C19 HEA 603 A 1 HETATM 53 C C20 HEA . . . Q 17 337.207 317.035 254.464 1 54.04 ? C20 HEA 603 A 1 HETATM 54 C C21 HEA . . . Q 17 336.35 317.697 255.533 1 54.04 ? C21 HEA 603 A 1 HETATM 55 C C22 HEA . . . Q 17 337.139 317.939 256.795 1 54.04 ? C22 HEA 603 A 1 HETATM 56 C C23 HEA . . . Q 17 336.656 317.594 258 1 54.04 ? C23 HEA 603 A 1 HETATM 57 C C24 HEA . . . Q 17 337.452 317.851 259.239 1 54.04 ? C24 HEA 603 A 1 HETATM 58 C C25 HEA . . . Q 17 335.325 316.926 258.158 1 54.04 ? C25 HEA 603 A 1 HETATM 59 C C26 HEA . . . Q 17 339.46 323.383 252.161 1 54.04 ? C26 HEA 603 A 1 HETATM 60 C C27 HEA . . . Q 17 339.581 318.059 254.148 1 54.04 ? C27 HEA 603 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 264 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 60 #