data_5Z62
#
_model_server_result.job_id            BbRz-1Djz52NiFF8Q22TcA 
_model_server_result.datetime_utc      '2024-11-02 17:26:24' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5z62 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"Q","auth_seq_id":603}' 
#
_entry.id    5Z62 
#
_exptl.entry_id    5Z62 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              852.837 
_entity.id                          17 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            HEME-A 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5Z62 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5Z62 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    tetradecameric 
_pdbx_struct_assembly.oligomeric_count      14 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 17 Q N N 
? 17 R N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 H SG CYS 26 H CYS 30 1_555 H SG CYS 61 H CYS 65 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? 
disulf ? disulf2 H SG CYS 36 H CYS 40 1_555 H SG CYS 50 H CYS 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.875 ? 
metalc ? metalc1 A NE2 HIS 61 A HIS 61 1_555 Q FE HEA . A HEA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.673 ? 
metalc ? metalc2 A ND1 HIS 240 A HIS 240 1_555 O CU CU . A CU 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.079 ? 
metalc ? metalc3 A NE2 HIS 290 A HIS 290 1_555 O CU CU . A CU 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.099 ? 
metalc ? metalc4 A NE2 HIS 291 A HIS 291 1_555 O CU CU . A CU 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.093 ? 
metalc ? metalc5 A OD2 ASP 369 A ASP 369 1_555 P MG MG . A MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.104 ? 
metalc ? metalc6 A NE2 HIS 376 A HIS 376 1_555 R FE HEA . A HEA 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.791 ? 
metalc ? metalc7 A NE2 HIS 378 A HIS 378 1_555 Q FE HEA . A HEA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.643 ? 
metalc ? metalc8 B ND1 HIS 161 B HIS 161 1_555 T CU CU . B CU 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.162 ? 
metalc ? metalc9 B SG CYS 196 B CYS 196 1_555 T CU CU . B CU 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.441 ? 
metalc ? metalc10 B SG CYS 196 B CYS 196 1_555 U CU CU . B CU 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.401 ? 
metalc ? metalc11 B OE1 GLU 198 B GLU 198 1_555 P MG MG . A MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.37 ? 
metalc ? metalc12 B SG CYS 200 B CYS 200 1_555 T CU CU . B CU 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.397 ? 
metalc ? metalc13 B SG CYS 200 B CYS 200 1_555 U CU CU . B CU 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.384 ? 
metalc ? metalc14 B SD MET 207 B MET 207 1_555 U CU CU . B CU 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.476 ? 
metalc ? metalc15 F SG CYS 60 F CYS 91 1_555 Y ZN ZN . F ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.991 ? 
metalc ? metalc16 F SG CYS 62 F CYS 93 1_555 Y ZN ZN . F ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.431 ? 
metalc ? metalc17 F SG CYS 82 F CYS 113 1_555 Y ZN ZN . F ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.5 ? 
covale ? covale1 H O CYS 50 H CYS 54 1_555 H N TRP 52 H TRP 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? 
#
_chem_comp.formula           'C49 H56 Fe N4 O6' 
_chem_comp.formula_weight    852.837 
_chem_comp.id                HEA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              HEME-A 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     5Z62 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
O 15 CU A 1 601 517 CU CU . 
P 16 MG A 1 602 518 MG MG . 
Q 17 HEA A 1 603 515 HEA HEA . 
R 17 HEA A 1 604 516 HEA HEA . 
S 18 PEE A 1 605 1 PEE PEE . 
T 15 CU B 1 301 228 CU CU . 
U 15 CU B 1 302 229 CU CU . 
V 18 PEE C 1 301 2 PEE PEE . 
W 18 PEE C 1 302 3 PEE PEE . 
X 19 CDL C 1 303 1 CDL CDL . 
Y 20 ZN F 1 201 130 ZN ZN . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 FE FE HEA . . . Q 17 336.294 326.6 244.913 1 54.04 ? FE HEA 603 A 1 
HETATM 2 C CHA HEA . . . Q 17 334.91 327.94 242.053 1 54.04 ? CHA HEA 603 A 1 
HETATM 3 C CHB HEA . . . Q 17 339.425 326.307 243.485 1 54.04 ? CHB HEA 603 A 1 
HETATM 4 C CHC HEA . . . Q 17 337.591 325.306 247.866 1 54.04 ? CHC HEA 603 A 1 
HETATM 5 C CHD HEA . . . Q 17 333.287 327.192 246.567 1 54.04 ? CHD HEA 603 A 1 
HETATM 6 N NA HEA . . . Q 17 336.962 326.809 243.069 1 54.04 ? NA HEA 603 A 1 
HETATM 7 C C1A HEA . . . Q 17 336.35 327.795 242.174 1 54.04 ? C1A HEA 603 A 1 
HETATM 8 C C2A HEA . . . Q 17 337.29 328.526 241.299 1 54.04 ? C2A HEA 603 A 1 
HETATM 9 C C3A HEA . . . Q 17 338.603 328.038 241.722 1 54.04 ? C3A HEA 603 A 1 
HETATM 10 C C4A HEA . . . Q 17 338.38 327.071 242.82 1 54.04 ? C4A HEA 603 A 1 
HETATM 11 C CMA HEA . . . Q 17 339.877 328.513 241.139 1 54.04 ? CMA HEA 603 A 1 
HETATM 12 O OMA HEA . . . Q 17 340.941 328.398 241.706 1 54.04 ? OMA HEA 603 A 1 
HETATM 13 C CAA HEA . . . Q 17 336.988 329.537 240.228 1 54.04 ? CAA HEA 603 A 1 
HETATM 14 C CBA HEA . . . Q 17 337.102 328.774 238.917 1 54.04 ? CBA HEA 603 A 1 
HETATM 15 C CGA HEA . . . Q 17 336.626 329.618 237.772 1 54.04 ? CGA HEA 603 A 1 
HETATM 16 O O1A HEA . . . Q 17 337.068 329.379 236.63 1 54.04 ? O1A HEA 603 A 1 
HETATM 17 O O2A HEA . . . Q 17 335.808 330.525 238.013 1 54.04 ? O2A HEA 603 A 1 
HETATM 18 N NB HEA . . . Q 17 338.182 325.927 245.557 1 54.04 ? NB HEA 603 A 1 
HETATM 19 C C1B HEA . . . Q 17 339.336 325.883 244.874 1 54.04 ? C1B HEA 603 A 1 
HETATM 20 C C2B HEA . . . Q 17 340.51 325.35 245.591 1 54.04 ? C2B HEA 603 A 1 
HETATM 21 C C3B HEA . . . Q 17 339.965 325.048 246.912 1 54.04 ? C3B HEA 603 A 1 
HETATM 22 C C4B HEA . . . Q 17 338.542 325.442 246.763 1 54.04 ? C4B HEA 603 A 1 
HETATM 23 C CMB HEA . . . Q 17 341.914 325.179 245.092 1 54.04 ? CMB HEA 603 A 1 
HETATM 24 N NC HEA . . . Q 17 335.571 326.304 246.861 1 54.04 ? NC HEA 603 A 1 
HETATM 25 C C1C HEA . . . Q 17 336.213 325.787 247.925 1 54.04 ? C1C HEA 603 A 1 
HETATM 26 C C2C HEA . . . Q 17 335.451 325.694 249.188 1 54.04 ? C2C HEA 603 A 1 
HETATM 27 C C3C HEA . . . Q 17 334.172 326.254 248.774 1 54.04 ? C3C HEA 603 A 1 
HETATM 28 C C4C HEA . . . Q 17 334.36 326.6 247.357 1 54.04 ? C4C HEA 603 A 1 
HETATM 29 C CMC HEA . . . Q 17 335.91 325.16 250.51 1 54.04 ? CMC HEA 603 A 1 
HETATM 30 C CAC HEA . . . Q 17 332.946 326.472 249.572 1 54.04 ? CAC HEA 603 A 1 
HETATM 31 C CBC HEA . . . Q 17 332.372 325.5 250.246 1 54.04 ? CBC HEA 603 A 1 
HETATM 32 N ND HEA . . . Q 17 334.428 327.42 244.383 1 54.04 ? ND HEA 603 A 1 
HETATM 33 C C1D HEA . . . Q 17 333.35 327.589 245.164 1 54.04 ? C1D HEA 603 A 1 
HETATM 34 C C2D HEA . . . Q 17 332.181 328.218 244.524 1 54.04 ? C2D HEA 603 A 1 
HETATM 35 C C3D HEA . . . Q 17 332.626 328.448 243.158 1 54.04 ? C3D HEA 603 A 1 
HETATM 36 C C4D HEA . . . Q 17 334.018 327.936 243.207 1 54.04 ? C4D HEA 603 A 1 
HETATM 37 C CMD HEA . . . Q 17 330.842 328.533 245.119 1 54.04 ? CMD HEA 603 A 1 
HETATM 38 C CAD HEA . . . Q 17 331.809 329.103 242.071 1 54.04 ? CAD HEA 603 A 1 
HETATM 39 C CBD HEA . . . Q 17 331.644 328.306 240.794 1 54.04 ? CBD HEA 603 A 1 
HETATM 40 C CGD HEA . . . Q 17 331.474 329.327 239.702 1 54.04 ? CGD HEA 603 A 1 
HETATM 41 O O1D HEA . . . Q 17 330.386 329.917 239.594 1 54.04 ? O1D HEA 603 A 1 
HETATM 42 O O2D HEA . . . Q 17 332.438 329.556 238.95 1 54.04 ? O2D HEA 603 A 1 
HETATM 43 C C11 HEA . . . Q 17 340.693 324.494 248.072 1 54.04 ? C11 HEA 603 A 1 
HETATM 44 O O11 HEA . . . Q 17 340.414 325.263 249.241 1 54.04 ? O11 HEA 603 A 1 
HETATM 45 C C12 HEA . . . Q 17 340.313 323.046 248.332 1 54.04 ? C12 HEA 603 A 1 
HETATM 46 C C13 HEA . . . Q 17 340.784 322.648 249.72 1 54.04 ? C13 HEA 603 A 1 
HETATM 47 C C14 HEA . . . Q 17 339.776 321.728 250.369 1 54.04 ? C14 HEA 603 A 1 
HETATM 48 C C15 HEA . . . Q 17 339.168 322.067 251.516 1 54.04 ? C15 HEA 603 A 1 
HETATM 49 C C16 HEA . . . Q 17 338.161 321.153 252.168 1 54.04 ? C16 HEA 603 A 1 
HETATM 50 C C17 HEA . . . Q 17 338.592 319.708 252.002 1 54.04 ? C17 HEA 603 A 1 
HETATM 51 C C18 HEA . . . Q 17 337.679 318.758 252.747 1 54.04 ? C18 HEA 603 A 1 
HETATM 52 C C19 HEA . . . Q 17 338.134 317.993 253.752 1 54.04 ? C19 HEA 603 A 1 
HETATM 53 C C20 HEA . . . Q 17 337.207 317.035 254.464 1 54.04 ? C20 HEA 603 A 1 
HETATM 54 C C21 HEA . . . Q 17 336.35 317.697 255.533 1 54.04 ? C21 HEA 603 A 1 
HETATM 55 C C22 HEA . . . Q 17 337.139 317.939 256.795 1 54.04 ? C22 HEA 603 A 1 
HETATM 56 C C23 HEA . . . Q 17 336.656 317.594 258 1 54.04 ? C23 HEA 603 A 1 
HETATM 57 C C24 HEA . . . Q 17 337.452 317.851 259.239 1 54.04 ? C24 HEA 603 A 1 
HETATM 58 C C25 HEA . . . Q 17 335.325 316.926 258.158 1 54.04 ? C25 HEA 603 A 1 
HETATM 59 C C26 HEA . . . Q 17 339.46 323.383 252.161 1 54.04 ? C26 HEA 603 A 1 
HETATM 60 C C27 HEA . . . Q 17 339.581 318.059 254.148 1 54.04 ? C27 HEA 603 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    27 
_model_server_stats.query_time_ms           235 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           60 
#