data_5Z62 # _model_server_result.job_id XJuUd29Mcxwo47H3QzxGGQ _model_server_result.datetime_utc '2024-11-02 17:25:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5z62 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"R","auth_seq_id":604}' # _entry.id 5Z62 # _exptl.entry_id 5Z62 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 852.837 _entity.id 17 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description HEME-A _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5Z62 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 5Z62 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetradecameric _pdbx_struct_assembly.oligomeric_count 14 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 17 Q N N ? 17 R N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 H SG CYS 26 H CYS 30 1_555 H SG CYS 61 H CYS 65 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? disulf ? disulf2 H SG CYS 36 H CYS 40 1_555 H SG CYS 50 H CYS 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.875 ? metalc ? metalc1 A NE2 HIS 61 A HIS 61 1_555 Q FE HEA . A HEA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.673 ? metalc ? metalc2 A ND1 HIS 240 A HIS 240 1_555 O CU CU . A CU 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.079 ? metalc ? metalc3 A NE2 HIS 290 A HIS 290 1_555 O CU CU . A CU 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.099 ? metalc ? metalc4 A NE2 HIS 291 A HIS 291 1_555 O CU CU . A CU 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.093 ? metalc ? metalc5 A OD2 ASP 369 A ASP 369 1_555 P MG MG . A MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.104 ? metalc ? metalc6 A NE2 HIS 376 A HIS 376 1_555 R FE HEA . A HEA 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.791 ? metalc ? metalc7 A NE2 HIS 378 A HIS 378 1_555 Q FE HEA . A HEA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.643 ? metalc ? metalc8 B ND1 HIS 161 B HIS 161 1_555 T CU CU . B CU 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.162 ? metalc ? metalc9 B SG CYS 196 B CYS 196 1_555 T CU CU . B CU 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.441 ? metalc ? metalc10 B SG CYS 196 B CYS 196 1_555 U CU CU . B CU 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.401 ? metalc ? metalc11 B OE1 GLU 198 B GLU 198 1_555 P MG MG . A MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.37 ? metalc ? metalc12 B SG CYS 200 B CYS 200 1_555 T CU CU . B CU 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.397 ? metalc ? metalc13 B SG CYS 200 B CYS 200 1_555 U CU CU . B CU 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.384 ? metalc ? metalc14 B SD MET 207 B MET 207 1_555 U CU CU . B CU 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.476 ? metalc ? metalc15 F SG CYS 60 F CYS 91 1_555 Y ZN ZN . F ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.991 ? metalc ? metalc16 F SG CYS 62 F CYS 93 1_555 Y ZN ZN . F ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.431 ? metalc ? metalc17 F SG CYS 82 F CYS 113 1_555 Y ZN ZN . F ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.5 ? covale ? covale1 H O CYS 50 H CYS 54 1_555 H N TRP 52 H TRP 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? # _chem_comp.formula 'C49 H56 Fe N4 O6' _chem_comp.formula_weight 852.837 _chem_comp.id HEA _chem_comp.mon_nstd_flag . _chem_comp.name HEME-A _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5Z62 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code O 15 CU A 1 601 517 CU CU . P 16 MG A 1 602 518 MG MG . Q 17 HEA A 1 603 515 HEA HEA . R 17 HEA A 1 604 516 HEA HEA . S 18 PEE A 1 605 1 PEE PEE . T 15 CU B 1 301 228 CU CU . U 15 CU B 1 302 229 CU CU . V 18 PEE C 1 301 2 PEE PEE . W 18 PEE C 1 302 3 PEE PEE . X 19 CDL C 1 303 1 CDL CDL . Y 20 ZN F 1 201 130 ZN ZN . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 FE FE HEA . . . R 17 329.598 338.196 249.463 1 58.38 ? FE HEA 604 A 1 HETATM 2 C CHA HEA . . . R 17 329.66 337.854 246.009 1 58.38 ? CHA HEA 604 A 1 HETATM 3 C CHB HEA . . . R 17 329.547 341.636 249.322 1 58.38 ? CHB HEA 604 A 1 HETATM 4 C CHC HEA . . . R 17 329.605 338.418 252.936 1 58.38 ? CHC HEA 604 A 1 HETATM 5 C CHD HEA . . . R 17 329.615 334.729 249.722 1 58.38 ? CHD HEA 604 A 1 HETATM 6 N NA HEA . . . R 17 329.848 339.476 247.993 1 58.38 ? NA HEA 604 A 1 HETATM 7 C C1A HEA . . . R 17 329.421 339.147 246.629 1 58.38 ? C1A HEA 604 A 1 HETATM 8 C C2A HEA . . . R 17 328.846 340.272 245.867 1 58.38 ? C2A HEA 604 A 1 HETATM 9 C C3A HEA . . . R 17 328.826 341.367 246.836 1 58.38 ? C3A HEA 604 A 1 HETATM 10 C C4A HEA . . . R 17 329.36 340.845 248.113 1 58.38 ? C4A HEA 604 A 1 HETATM 11 C CMA HEA . . . R 17 328.304 342.717 246.55 1 58.38 ? CMA HEA 604 A 1 HETATM 12 O OMA HEA . . . R 17 327.804 343.39 247.427 1 58.38 ? OMA HEA 604 A 1 HETATM 13 C CAA HEA . . . R 17 328.385 340.28 244.44 1 58.38 ? CAA HEA 604 A 1 HETATM 14 C CBA HEA . . . R 17 329.594 340.536 243.569 1 58.38 ? CBA HEA 604 A 1 HETATM 15 C CGA HEA . . . R 17 329.21 340.431 242.123 1 58.38 ? CGA HEA 604 A 1 HETATM 16 O O1A HEA . . . R 17 328.512 341.339 241.63 1 58.38 ? O1A HEA 604 A 1 HETATM 17 O O2A HEA . . . R 17 329.596 339.438 241.477 1 58.38 ? O2A HEA 604 A 1 HETATM 18 N NB HEA . . . R 17 329.571 339.756 250.883 1 58.38 ? NB HEA 604 A 1 HETATM 19 C C1B HEA . . . R 17 329.54 341.078 250.668 1 58.38 ? C1B HEA 604 A 1 HETATM 20 C C2B HEA . . . R 17 329.525 341.942 251.864 1 58.38 ? C2B HEA 604 A 1 HETATM 21 C C3B HEA . . . R 17 329.539 340.987 252.967 1 58.38 ? C3B HEA 604 A 1 HETATM 22 C C4B HEA . . . R 17 329.57 339.694 252.232 1 58.38 ? C4B HEA 604 A 1 HETATM 23 C CMB HEA . . . R 17 329.493 343.436 251.927 1 58.38 ? CMB HEA 604 A 1 HETATM 24 N NC HEA . . . R 17 329.61 336.82 251.041 1 58.38 ? NC HEA 604 A 1 HETATM 25 C C1C HEA . . . R 17 329.627 337.077 252.362 1 58.38 ? C1C HEA 604 A 1 HETATM 26 C C2C HEA . . . R 17 329.652 335.917 253.268 1 58.38 ? C2C HEA 604 A 1 HETATM 27 C C3C HEA . . . R 17 329.66 334.826 252.301 1 58.38 ? C3C HEA 604 A 1 HETATM 28 C C4C HEA . . . R 17 329.63 335.479 250.98 1 58.38 ? C4C HEA 604 A 1 HETATM 29 C CMC HEA . . . R 17 329.663 335.917 254.77 1 58.38 ? CMC HEA 604 A 1 HETATM 30 C CAC HEA . . . R 17 329.697 333.378 252.589 1 58.38 ? CAC HEA 604 A 1 HETATM 31 C CBC HEA . . . R 17 330.687 332.858 253.28 1 58.38 ? CBC HEA 604 A 1 HETATM 32 N ND HEA . . . R 17 329.617 336.59 248.1 1 58.38 ? ND HEA 604 A 1 HETATM 33 C C1D HEA . . . R 17 329.604 335.271 248.361 1 58.38 ? C1D HEA 604 A 1 HETATM 34 C C2D HEA . . . R 17 329.602 334.372 247.183 1 58.38 ? C2D HEA 604 A 1 HETATM 35 C C3D HEA . . . R 17 329.613 335.313 246.066 1 58.38 ? C3D HEA 604 A 1 HETATM 36 C C4D HEA . . . R 17 329.628 336.611 246.758 1 58.38 ? C4D HEA 604 A 1 HETATM 37 C CMD HEA . . . R 17 329.584 332.868 247.142 1 58.38 ? CMD HEA 604 A 1 HETATM 38 C CAD HEA . . . R 17 329.644 335.061 244.584 1 58.38 ? CAD HEA 604 A 1 HETATM 39 C CBD HEA . . . R 17 328.353 334.479 244.048 1 58.38 ? CBD HEA 604 A 1 HETATM 40 C CGD HEA . . . R 17 328.619 334.03 242.638 1 58.38 ? CGD HEA 604 A 1 HETATM 41 O O1D HEA . . . R 17 327.66 333.849 241.872 1 58.38 ? O1D HEA 604 A 1 HETATM 42 O O2D HEA . . . R 17 329.798 333.864 242.281 1 58.38 ? O2D HEA 604 A 1 HETATM 43 C C11 HEA . . . R 17 329.542 341.309 254.416 1 58.38 ? C11 HEA 604 A 1 HETATM 44 O O11 HEA . . . R 17 328.698 340.425 255.159 1 58.38 ? O11 HEA 604 A 1 HETATM 45 C C12 HEA . . . R 17 330.968 341.217 254.941 1 58.38 ? C12 HEA 604 A 1 HETATM 46 C C13 HEA . . . R 17 331.171 341.848 256.317 1 58.38 ? C13 HEA 604 A 1 HETATM 47 C C14 HEA . . . R 17 332.527 341.378 256.791 1 58.38 ? C14 HEA 604 A 1 HETATM 48 C C15 HEA . . . R 17 333.377 342.026 257.604 1 58.38 ? C15 HEA 604 A 1 HETATM 49 C C16 HEA . . . R 17 333.086 343.373 258.216 1 58.38 ? C16 HEA 604 A 1 HETATM 50 C C17 HEA . . . R 17 333.598 343.362 259.657 1 58.38 ? C17 HEA 604 A 1 HETATM 51 C C18 HEA . . . R 17 333.599 344.75 260.243 1 58.38 ? C18 HEA 604 A 1 HETATM 52 C C19 HEA . . . R 17 334.704 345.315 260.751 1 58.38 ? C19 HEA 604 A 1 HETATM 53 C C20 HEA . . . R 17 334.609 346.71 261.318 1 58.38 ? C20 HEA 604 A 1 HETATM 54 C C21 HEA . . . R 17 335.367 347.743 260.488 1 58.38 ? C21 HEA 604 A 1 HETATM 55 C C22 HEA . . . R 17 335.013 347.627 259.026 1 58.38 ? C22 HEA 604 A 1 HETATM 56 C C23 HEA . . . R 17 334.13 348.428 258.419 1 58.38 ? C23 HEA 604 A 1 HETATM 57 C C24 HEA . . . R 17 333.408 349.518 259.152 1 58.38 ? C24 HEA 604 A 1 HETATM 58 C C25 HEA . . . R 17 333.863 348.216 256.965 1 58.38 ? C25 HEA 604 A 1 HETATM 59 C C26 HEA . . . R 17 334.671 341.347 257.926 1 58.38 ? C26 HEA 604 A 1 HETATM 60 C C27 HEA . . . R 17 336.007 344.577 260.79 1 58.38 ? C27 HEA 604 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 32 _model_server_stats.query_time_ms 280 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 60 #