data_5Z6J # _model_server_result.job_id 2nxf-8E6wzgCNnRfLUvtKQ _model_server_result.datetime_utc '2024-11-05 00:16:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5z6j # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":202}' # _entry.id 5Z6J # _exptl.entry_id 5Z6J _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 743.405 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5Z6J _cell.length_a 34.132 _cell.length_b 44.926 _cell.length_c 98.438 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5Z6J _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C TYR 154 A TYR 151 1_555 A N CME 155 A CME 152 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale2 A C CME 155 A CME 152 1_555 A N PHE 156 A PHE 153 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? # _chem_comp.formula 'C21 H28 N7 O17 P3' _chem_comp.formula_weight 743.405 _chem_comp.id NAP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAP doub 311 n n PA O2A NAP sing 312 n n PA O5B NAP sing 313 n n PA O3 NAP sing 314 n n O2A HOA2 NAP sing 315 n n O5B C5B NAP sing 316 n n C5B C4B NAP sing 317 n n C5B H51A NAP sing 318 n n C5B H52A NAP sing 319 n n C4B O4B NAP sing 320 n n C4B C3B NAP sing 321 n n C4B H4B NAP sing 322 n n O4B C1B NAP sing 323 n n C3B O3B NAP sing 324 n n C3B C2B NAP sing 325 n n C3B H3B NAP sing 326 n n O3B HO3A NAP sing 327 n n C2B O2B NAP sing 328 n n C2B C1B NAP sing 329 n n C2B H2B NAP sing 330 n n O2B P2B NAP sing 331 n n C1B N9A NAP sing 332 n n C1B H1B NAP sing 333 n n N9A C8A NAP sing 334 n y N9A C4A NAP sing 335 n y C8A N7A NAP doub 336 n y C8A H8A NAP sing 337 n n N7A C5A NAP sing 338 n y C5A C6A NAP sing 339 n y C5A C4A NAP doub 340 n y C6A N6A NAP sing 341 n n C6A N1A NAP doub 342 n y N6A H61A NAP sing 343 n n N6A H62A NAP sing 344 n n N1A C2A NAP sing 345 n y C2A N3A NAP doub 346 n y C2A H2A NAP sing 347 n n N3A C4A NAP sing 348 n y O3 PN NAP sing 349 n n PN O1N NAP doub 350 n n PN O2N NAP sing 351 n n PN O5D NAP sing 352 n n O5D C5D NAP sing 353 n n C5D C4D NAP sing 354 n n C5D H51N NAP sing 355 n n C5D H52N NAP sing 356 n n C4D O4D NAP sing 357 n n C4D C3D NAP sing 358 n n C4D H4D NAP sing 359 n n O4D C1D NAP sing 360 n n C3D O3D NAP sing 361 n n C3D C2D NAP sing 362 n n C3D H3D NAP sing 363 n n O3D HO3N NAP sing 364 n n C2D O2D NAP sing 365 n n C2D C1D NAP sing 366 n n C2D H2D NAP sing 367 n n O2D HO2N NAP sing 368 n n C1D N1N NAP sing 369 n n C1D H1D NAP sing 370 n n N1N C2N NAP sing 371 n y N1N C6N NAP doub 372 n y C2N C3N NAP doub 373 n y C2N H2N NAP sing 374 n n C3N C7N NAP sing 375 n n C3N C4N NAP sing 376 n y C7N O7N NAP doub 377 n n C7N N7N NAP sing 378 n n N7N H71N NAP sing 379 n n N7N H72N NAP sing 380 n n C4N C5N NAP doub 381 n y C4N H4N NAP sing 382 n n C5N C6N NAP sing 383 n y C5N H5N NAP sing 384 n n C6N H6N NAP sing 385 n n P2B O1X NAP doub 386 n n P2B O2X NAP sing 387 n n P2B O3X NAP sing 388 n n O2X HOP2 NAP sing 389 n n O3X HOP3 NAP sing 390 n n # _atom_sites.entry_id 5Z6J _atom_sites.fract_transf_matrix[1][1] 0.029298 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.022259 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010159 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FOL A 1 201 201 FOL FOL . C 3 NAP A 1 202 202 NAP NAP . D 4 HOH A 1 301 126 HOH HOH . D 4 HOH A 2 302 47 HOH HOH . D 4 HOH A 3 303 41 HOH HOH . D 4 HOH A 4 304 80 HOH HOH . D 4 HOH A 5 305 48 HOH HOH . D 4 HOH A 6 306 34 HOH HOH . D 4 HOH A 7 307 35 HOH HOH . D 4 HOH A 8 308 110 HOH HOH . D 4 HOH A 9 309 14 HOH HOH . D 4 HOH A 10 310 53 HOH HOH . D 4 HOH A 11 311 131 HOH HOH . D 4 HOH A 12 312 61 HOH HOH . D 4 HOH A 13 313 75 HOH HOH . D 4 HOH A 14 314 130 HOH HOH . D 4 HOH A 15 315 103 HOH HOH . D 4 HOH A 16 316 11 HOH HOH . D 4 HOH A 17 317 68 HOH HOH . D 4 HOH A 18 318 62 HOH HOH . D 4 HOH A 19 319 99 HOH HOH . D 4 HOH A 20 320 4 HOH HOH . D 4 HOH A 21 321 12 HOH HOH . D 4 HOH A 22 322 114 HOH HOH . D 4 HOH A 23 323 82 HOH HOH . D 4 HOH A 24 324 2 HOH HOH . D 4 HOH A 25 325 65 HOH HOH . D 4 HOH A 26 326 118 HOH HOH . D 4 HOH A 27 327 26 HOH HOH . D 4 HOH A 28 328 38 HOH HOH . D 4 HOH A 29 329 44 HOH HOH . D 4 HOH A 30 330 40 HOH HOH . D 4 HOH A 31 331 93 HOH HOH . D 4 HOH A 32 332 33 HOH HOH . D 4 HOH A 33 333 27 HOH HOH . D 4 HOH A 34 334 135 HOH HOH . D 4 HOH A 35 335 116 HOH HOH . D 4 HOH A 36 336 39 HOH HOH . D 4 HOH A 37 337 91 HOH HOH . D 4 HOH A 38 338 10 HOH HOH . D 4 HOH A 39 339 95 HOH HOH . D 4 HOH A 40 340 60 HOH HOH . D 4 HOH A 41 341 30 HOH HOH . D 4 HOH A 42 342 16 HOH HOH . D 4 HOH A 43 343 21 HOH HOH . D 4 HOH A 44 344 63 HOH HOH . D 4 HOH A 45 345 1 HOH HOH . D 4 HOH A 46 346 32 HOH HOH . D 4 HOH A 47 347 120 HOH HOH . D 4 HOH A 48 348 22 HOH HOH . D 4 HOH A 49 349 67 HOH HOH . D 4 HOH A 50 350 55 HOH HOH . D 4 HOH A 51 351 100 HOH HOH . D 4 HOH A 52 352 86 HOH HOH . D 4 HOH A 53 353 5 HOH HOH . D 4 HOH A 54 354 106 HOH HOH . D 4 HOH A 55 355 31 HOH HOH . D 4 HOH A 56 356 72 HOH HOH . D 4 HOH A 57 357 79 HOH HOH . D 4 HOH A 58 358 24 HOH HOH . D 4 HOH A 59 359 36 HOH HOH . D 4 HOH A 60 360 59 HOH HOH . D 4 HOH A 61 361 17 HOH HOH . D 4 HOH A 62 362 51 HOH HOH . D 4 HOH A 63 363 101 HOH HOH . D 4 HOH A 64 364 111 HOH HOH . D 4 HOH A 65 365 37 HOH HOH . D 4 HOH A 66 366 42 HOH HOH . D 4 HOH A 67 367 19 HOH HOH . D 4 HOH A 68 368 107 HOH HOH . D 4 HOH A 69 369 13 HOH HOH . D 4 HOH A 70 370 109 HOH HOH . D 4 HOH A 71 371 20 HOH HOH . D 4 HOH A 72 372 119 HOH HOH . D 4 HOH A 73 373 3 HOH HOH . D 4 HOH A 74 374 90 HOH HOH . D 4 HOH A 75 375 84 HOH HOH . D 4 HOH A 76 376 87 HOH HOH . D 4 HOH A 77 377 73 HOH HOH . D 4 HOH A 78 378 54 HOH HOH . D 4 HOH A 79 379 104 HOH HOH . D 4 HOH A 80 380 43 HOH HOH . D 4 HOH A 81 381 45 HOH HOH . D 4 HOH A 82 382 69 HOH HOH . D 4 HOH A 83 383 18 HOH HOH . D 4 HOH A 84 384 76 HOH HOH . D 4 HOH A 85 385 29 HOH HOH . D 4 HOH A 86 386 81 HOH HOH . D 4 HOH A 87 387 25 HOH HOH . D 4 HOH A 88 388 83 HOH HOH . D 4 HOH A 89 389 123 HOH HOH . D 4 HOH A 90 390 122 HOH HOH . D 4 HOH A 91 391 7 HOH HOH . D 4 HOH A 92 392 50 HOH HOH . D 4 HOH A 93 393 9 HOH HOH . D 4 HOH A 94 394 57 HOH HOH . D 4 HOH A 95 395 97 HOH HOH . D 4 HOH A 96 396 98 HOH HOH . D 4 HOH A 97 397 92 HOH HOH . D 4 HOH A 98 398 49 HOH HOH . D 4 HOH A 99 399 28 HOH HOH . D 4 HOH A 100 400 46 HOH HOH . D 4 HOH A 101 401 125 HOH HOH . D 4 HOH A 102 402 113 HOH HOH . D 4 HOH A 103 403 8 HOH HOH . D 4 HOH A 104 404 85 HOH HOH . D 4 HOH A 105 405 58 HOH HOH . D 4 HOH A 106 406 108 HOH HOH . D 4 HOH A 107 407 127 HOH HOH . D 4 HOH A 108 408 94 HOH HOH . D 4 HOH A 109 409 6 HOH HOH . D 4 HOH A 110 410 129 HOH HOH . D 4 HOH A 111 411 23 HOH HOH . D 4 HOH A 112 412 117 HOH HOH . D 4 HOH A 113 413 15 HOH HOH . D 4 HOH A 114 414 78 HOH HOH . D 4 HOH A 115 415 121 HOH HOH . D 4 HOH A 116 416 52 HOH HOH . D 4 HOH A 117 417 124 HOH HOH . D 4 HOH A 118 418 96 HOH HOH . D 4 HOH A 119 419 89 HOH HOH . D 4 HOH A 120 420 128 HOH HOH . D 4 HOH A 121 421 88 HOH HOH . D 4 HOH A 122 422 66 HOH HOH . D 4 HOH A 123 423 56 HOH HOH . D 4 HOH A 124 424 64 HOH HOH . D 4 HOH A 125 425 112 HOH HOH . D 4 HOH A 126 426 132 HOH HOH . D 4 HOH A 127 427 133 HOH HOH . D 4 HOH A 128 428 71 HOH HOH . D 4 HOH A 129 429 102 HOH HOH . D 4 HOH A 130 430 134 HOH HOH . D 4 HOH A 131 431 70 HOH HOH . D 4 HOH A 132 432 115 HOH HOH . D 4 HOH A 133 433 74 HOH HOH . D 4 HOH A 134 434 77 HOH HOH . D 4 HOH A 135 435 105 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAP . . . C 3 4.527 -8.393 15.544 1 9.67 ? PA NAP 202 A 1 HETATM 2 O O1A NAP . . . C 3 5.665 -7.946 16.39 1 8.79 ? O1A NAP 202 A 1 HETATM 3 O O2A NAP . . . C 3 3.999 -7.548 14.421 1 8.62 ? O2A NAP 202 A 1 HETATM 4 O O5B NAP . . . C 3 4.865 -9.838 14.837 1 11.17 ? O5B NAP 202 A 1 HETATM 5 C C5B NAP . . . C 3 5.185 -10.785 15.832 1 10.86 ? C5B NAP 202 A 1 HETATM 6 C C4B NAP . . . C 3 5.592 -12.048 15.015 1 9.28 ? C4B NAP 202 A 1 HETATM 7 O O4B NAP . . . C 3 6.732 -11.742 14.203 1 10.09 ? O4B NAP 202 A 1 HETATM 8 C C3B NAP . . . C 3 5.935 -13.274 15.873 1 16.29 ? C3B NAP 202 A 1 HETATM 9 O O3B NAP . . . C 3 4.778 -13.991 16.125 1 18.33 ? O3B NAP 202 A 1 HETATM 10 C C2B NAP . . . C 3 6.774 -14.06 14.834 1 12.99 ? C2B NAP 202 A 1 HETATM 11 O O2B NAP . . . C 3 6.055 -14.552 13.821 1 17.11 ? O2B NAP 202 A 1 HETATM 12 C C1B NAP . . . C 3 7.574 -12.876 14.191 1 12.03 ? C1B NAP 202 A 1 HETATM 13 N N9A NAP . . . C 3 8.825 -12.544 14.866 1 13 ? N9A NAP 202 A 1 HETATM 14 C C8A NAP . . . C 3 9.118 -11.475 15.732 1 11.86 ? C8A NAP 202 A 1 HETATM 15 N N7A NAP . . . C 3 10.406 -11.469 16.133 1 12.36 ? N7A NAP 202 A 1 HETATM 16 C C5A NAP . . . C 3 10.962 -12.59 15.489 1 13.01 ? C5A NAP 202 A 1 HETATM 17 C C6A NAP . . . C 3 12.258 -13.154 15.502 1 14.85 ? C6A NAP 202 A 1 HETATM 18 N N6A NAP . . . C 3 13.274 -12.596 16.229 1 12.57 ? N6A NAP 202 A 1 HETATM 19 N N1A NAP . . . C 3 12.547 -14.27 14.773 1 14.87 ? N1A NAP 202 A 1 HETATM 20 C C2A NAP . . . C 3 11.499 -14.788 14.053 1 13 ? C2A NAP 202 A 1 HETATM 21 N N3A NAP . . . C 3 10.232 -14.383 13.944 1 12.2 ? N3A NAP 202 A 1 HETATM 22 C C4A NAP . . . C 3 9.984 -13.26 14.699 1 11.36 ? C4A NAP 202 A 1 HETATM 23 O O3 NAP . . . C 3 3.262 -8.87 16.545 1 10.24 ? O3 NAP 202 A 1 HETATM 24 P PN NAP . . . C 3 2.615 -7.918 17.673 1 11.85 ? PN NAP 202 A 1 HETATM 25 O O1N NAP . . . C 3 3.554 -7.565 18.759 1 10.07 ? O1N NAP 202 A 1 HETATM 26 O O2N NAP . . . C 3 1.306 -8.58 18.045 1 12.9 ? O2N NAP 202 A 1 HETATM 27 O O5D NAP . . . C 3 2.132 -6.383 17.033 1 12.41 ? O5D NAP 202 A 1 HETATM 28 C C5D NAP . . . C 3 0.985 -6.514 16.26 1 11.88 ? C5D NAP 202 A 1 HETATM 29 C C4D NAP . . . C 3 0.079 -5.319 16.622 1 13.77 ? C4D NAP 202 A 1 HETATM 30 O O4D NAP . . . C 3 0.804 -4.081 16.528 1 9.53 ? O4D NAP 202 A 1 HETATM 31 C C3D NAP . . . C 3 -1.149 -5.193 15.679 1 14.09 ? C3D NAP 202 A 1 HETATM 32 O O3D NAP . . . C 3 -2.232 -4.824 16.503 1 12.25 ? O3D NAP 202 A 1 HETATM 33 C C2D NAP . . . C 3 -0.786 -4.002 14.805 1 14.14 ? C2D NAP 202 A 1 HETATM 34 O O2D NAP . . . C 3 -1.943 -3.294 14.417 1 16.26 ? O2D NAP 202 A 1 HETATM 35 C C1D NAP . . . C 3 0.001 -3.136 15.85 1 10.27 ? C1D NAP 202 A 1 HETATM 36 N N1N NAP . . . C 3 0.946 -2.193 15.199 1 10.06 ? N1N NAP 202 A 1 HETATM 37 C C2N NAP . . . C 3 0.877 -0.834 15.452 1 9.23 ? C2N NAP 202 A 1 HETATM 38 C C3N NAP . . . C 3 1.877 -0.016 15.028 1 8.52 ? C3N NAP 202 A 1 HETATM 39 C C7N NAP . . . C 3 1.782 1.398 15.345 1 11.8 ? C7N NAP 202 A 1 HETATM 40 O O7N NAP . . . C 3 2.71 2.182 15.177 1 13.29 ? O7N NAP 202 A 1 HETATM 41 N N7N NAP . . . C 3 0.604 1.87 15.899 1 11.65 ? N7N NAP 202 A 1 HETATM 42 C C4N NAP . . . C 3 3.062 -0.519 14.28 1 7.17 ? C4N NAP 202 A 1 HETATM 43 C C5N NAP . . . C 3 2.964 -1.943 13.94 1 7.59 ? C5N NAP 202 A 1 HETATM 44 C C6N NAP . . . C 3 1.958 -2.704 14.378 1 8.65 ? C6N NAP 202 A 1 HETATM 45 P P2B NAP . . . C 3 5.84 -16.351 13.834 1 17.56 ? P2B NAP 202 A 1 HETATM 46 O O1X NAP . . . C 3 5.372 -16.536 12.423 1 16.56 ? O1X NAP 202 A 1 HETATM 47 O O2X NAP . . . C 3 7.231 -16.885 14.185 1 15.28 ? O2X NAP 202 A 1 HETATM 48 O O3X NAP . . . C 3 4.797 -16.407 14.914 1 19.58 ? O3X NAP 202 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 292 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 48 #