data_5Z6M
#
_model_server_result.job_id            PBvGnn9J6FEHI2AQkmZb5Q 
_model_server_result.datetime_utc      '2024-12-01 19:55:44' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5z6m 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":202}' 
#
_entry.id    5Z6M 
#
_exptl.entry_id    5Z6M 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              743.405 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5Z6M 
_cell.length_a            33.915 
_cell.length_b            41.849 
_cell.length_c            97.525 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5Z6M 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C TYR 154 A TYR 151 1_555 A N CME 155 A CME 152 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? 
covale ? covale2 A C CME 155 A CME 152 1_555 A N PHE 156 A PHE 153 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
#
_chem_comp.formula           'C21 H28 N7 O17 P3' 
_chem_comp.formula_weight    743.405 
_chem_comp.id                NAP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NAP doub 311 n n 
PA O2A NAP sing 312 n n 
PA O5B NAP sing 313 n n 
PA O3 NAP sing 314 n n 
O2A HOA2 NAP sing 315 n n 
O5B C5B NAP sing 316 n n 
C5B C4B NAP sing 317 n n 
C5B H51A NAP sing 318 n n 
C5B H52A NAP sing 319 n n 
C4B O4B NAP sing 320 n n 
C4B C3B NAP sing 321 n n 
C4B H4B NAP sing 322 n n 
O4B C1B NAP sing 323 n n 
C3B O3B NAP sing 324 n n 
C3B C2B NAP sing 325 n n 
C3B H3B NAP sing 326 n n 
O3B HO3A NAP sing 327 n n 
C2B O2B NAP sing 328 n n 
C2B C1B NAP sing 329 n n 
C2B H2B NAP sing 330 n n 
O2B P2B NAP sing 331 n n 
C1B N9A NAP sing 332 n n 
C1B H1B NAP sing 333 n n 
N9A C8A NAP sing 334 n y 
N9A C4A NAP sing 335 n y 
C8A N7A NAP doub 336 n y 
C8A H8A NAP sing 337 n n 
N7A C5A NAP sing 338 n y 
C5A C6A NAP sing 339 n y 
C5A C4A NAP doub 340 n y 
C6A N6A NAP sing 341 n n 
C6A N1A NAP doub 342 n y 
N6A H61A NAP sing 343 n n 
N6A H62A NAP sing 344 n n 
N1A C2A NAP sing 345 n y 
C2A N3A NAP doub 346 n y 
C2A H2A NAP sing 347 n n 
N3A C4A NAP sing 348 n y 
O3 PN NAP sing 349 n n 
PN O1N NAP doub 350 n n 
PN O2N NAP sing 351 n n 
PN O5D NAP sing 352 n n 
O5D C5D NAP sing 353 n n 
C5D C4D NAP sing 354 n n 
C5D H51N NAP sing 355 n n 
C5D H52N NAP sing 356 n n 
C4D O4D NAP sing 357 n n 
C4D C3D NAP sing 358 n n 
C4D H4D NAP sing 359 n n 
O4D C1D NAP sing 360 n n 
C3D O3D NAP sing 361 n n 
C3D C2D NAP sing 362 n n 
C3D H3D NAP sing 363 n n 
O3D HO3N NAP sing 364 n n 
C2D O2D NAP sing 365 n n 
C2D C1D NAP sing 366 n n 
C2D H2D NAP sing 367 n n 
O2D HO2N NAP sing 368 n n 
C1D N1N NAP sing 369 n n 
C1D H1D NAP sing 370 n n 
N1N C2N NAP sing 371 n y 
N1N C6N NAP doub 372 n y 
C2N C3N NAP doub 373 n y 
C2N H2N NAP sing 374 n n 
C3N C7N NAP sing 375 n n 
C3N C4N NAP sing 376 n y 
C7N O7N NAP doub 377 n n 
C7N N7N NAP sing 378 n n 
N7N H71N NAP sing 379 n n 
N7N H72N NAP sing 380 n n 
C4N C5N NAP doub 381 n y 
C4N H4N NAP sing 382 n n 
C5N C6N NAP sing 383 n y 
C5N H5N NAP sing 384 n n 
C6N H6N NAP sing 385 n n 
P2B O1X NAP doub 386 n n 
P2B O2X NAP sing 387 n n 
P2B O3X NAP sing 388 n n 
O2X HOP2 NAP sing 389 n n 
O3X HOP3 NAP sing 390 n n 
#
_atom_sites.entry_id                     5Z6M 
_atom_sites.fract_transf_matrix[1][1]    0.029485 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.023895 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010254 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 FOL A 1 201 201 FOL FOL . 
C 3 NAP A 1 202 202 NAP NAP . 
D 4 HOH A 1 301 3 HOH HOH . 
D 4 HOH A 2 302 6 HOH HOH . 
D 4 HOH A 3 303 18 HOH HOH . 
D 4 HOH A 4 304 7 HOH HOH . 
D 4 HOH A 5 305 32 HOH HOH . 
D 4 HOH A 6 306 24 HOH HOH . 
D 4 HOH A 7 307 1 HOH HOH . 
D 4 HOH A 8 308 23 HOH HOH . 
D 4 HOH A 9 309 14 HOH HOH . 
D 4 HOH A 10 310 33 HOH HOH . 
D 4 HOH A 11 311 29 HOH HOH . 
D 4 HOH A 12 312 11 HOH HOH . 
D 4 HOH A 13 313 4 HOH HOH . 
D 4 HOH A 14 314 30 HOH HOH . 
D 4 HOH A 15 315 13 HOH HOH . 
D 4 HOH A 16 316 5 HOH HOH . 
D 4 HOH A 17 317 15 HOH HOH . 
D 4 HOH A 18 318 22 HOH HOH . 
D 4 HOH A 19 319 10 HOH HOH . 
D 4 HOH A 20 320 25 HOH HOH . 
D 4 HOH A 21 321 17 HOH HOH . 
D 4 HOH A 22 322 21 HOH HOH . 
D 4 HOH A 23 323 16 HOH HOH . 
D 4 HOH A 24 324 12 HOH HOH . 
D 4 HOH A 25 325 19 HOH HOH . 
D 4 HOH A 26 326 34 HOH HOH . 
D 4 HOH A 27 327 37 HOH HOH . 
D 4 HOH A 28 328 2 HOH HOH . 
D 4 HOH A 29 329 35 HOH HOH . 
D 4 HOH A 30 330 9 HOH HOH . 
D 4 HOH A 31 331 8 HOH HOH . 
D 4 HOH A 32 332 28 HOH HOH . 
D 4 HOH A 33 333 27 HOH HOH . 
D 4 HOH A 34 334 31 HOH HOH . 
D 4 HOH A 35 335 39 HOH HOH . 
D 4 HOH A 36 336 36 HOH HOH . 
D 4 HOH A 37 337 20 HOH HOH . 
D 4 HOH A 38 338 26 HOH HOH . 
D 4 HOH A 39 339 40 HOH HOH . 
D 4 HOH A 40 340 41 HOH HOH . 
D 4 HOH A 41 341 38 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NAP . . . C 3 4.757 -7.977 14.609 1 26.36 ? PA NAP 202 A 1 
HETATM 2 O O1A NAP . . . C 3 5.673 -7.367 15.604 1 19.6 ? O1A NAP 202 A 1 
HETATM 3 O O2A NAP . . . C 3 4.123 -7.181 13.499 1 20.18 ? O2A NAP 202 A 1 
HETATM 4 O O5B NAP . . . C 3 5.526 -9.294 13.972 1 28.37 ? O5B NAP 202 A 1 
HETATM 5 C C5B NAP . . . C 3 5.295 -10.395 14.861 1 23.92 ? C5B NAP 202 A 1 
HETATM 6 C C4B NAP . . . C 3 5.862 -11.646 14.161 1 25.65 ? C4B NAP 202 A 1 
HETATM 7 O O4B NAP . . . C 3 7.053 -11.29 13.443 1 22.72 ? O4B NAP 202 A 1 
HETATM 8 C C3B NAP . . . C 3 6.233 -12.826 15.118 1 27.95 ? C3B NAP 202 A 1 
HETATM 9 O O3B NAP . . . C 3 5.129 -13.603 15.401 1 24.28 ? O3B NAP 202 A 1 
HETATM 10 C C2B NAP . . . C 3 7.139 -13.635 14.165 1 26.13 ? C2B NAP 202 A 1 
HETATM 11 O O2B NAP . . . C 3 6.461 -14.268 13.168 1 29.74 ? O2B NAP 202 A 1 
HETATM 12 C C1B NAP . . . C 3 7.926 -12.431 13.481 1 25.15 ? C1B NAP 202 A 1 
HETATM 13 N N9A NAP . . . C 3 9.168 -12.035 14.187 1 23.74 ? N9A NAP 202 A 1 
HETATM 14 C C8A NAP . . . C 3 9.411 -10.886 14.96 1 19.7 ? C8A NAP 202 A 1 
HETATM 15 N N7A NAP . . . C 3 10.664 -10.846 15.456 1 25.34 ? N7A NAP 202 A 1 
HETATM 16 C C5A NAP . . . C 3 11.266 -12.024 14.955 1 26.49 ? C5A NAP 202 A 1 
HETATM 17 C C6A NAP . . . C 3 12.56 -12.56 15.082 1 22.61 ? C6A NAP 202 A 1 
HETATM 18 N N6A NAP . . . C 3 13.516 -11.901 15.833 1 22.11 ? N6A NAP 202 A 1 
HETATM 19 N N1A NAP . . . C 3 12.912 -13.761 14.489 1 22.49 ? N1A NAP 202 A 1 
HETATM 20 C C2A NAP . . . C 3 11.919 -14.378 13.764 1 21.48 ? C2A NAP 202 A 1 
HETATM 21 N N3A NAP . . . C 3 10.657 -13.981 13.552 1 25.22 ? N3A NAP 202 A 1 
HETATM 22 C C4A NAP . . . C 3 10.349 -12.771 14.161 1 23.68 ? C4A NAP 202 A 1 
HETATM 23 O O3 NAP . . . C 3 3.539 -8.715 15.484 1 35.17 ? O3 NAP 202 A 1 
HETATM 24 P PN NAP . . . C 3 3.023 -7.894 16.723 1 32.04 ? PN NAP 202 A 1 
HETATM 25 O O1N NAP . . . C 3 4.063 -7.813 17.776 1 27.25 ? O1N NAP 202 A 1 
HETATM 26 O O2N NAP . . . C 3 1.579 -8.238 17.016 1 43 ? O2N NAP 202 A 1 
HETATM 27 O O5D NAP . . . C 3 2.884 -6.201 16.318 1 37.5 ? O5D NAP 202 A 1 
HETATM 28 C C5D NAP . . . C 3 1.722 -6.071 15.594 1 45.3 ? C5D NAP 202 A 1 
HETATM 29 C C4D NAP . . . C 3 0.8 -5.132 16.366 1 51.34 ? C4D NAP 202 A 1 
HETATM 30 O O4D NAP . . . C 3 1.286 -3.755 16.309 1 46.37 ? O4D NAP 202 A 1 
HETATM 31 C C3D NAP . . . C 3 -0.594 -5.148 15.689 1 59.53 ? C3D NAP 202 A 1 
HETATM 32 O O3D NAP . . . C 3 -1.53 -4.875 16.687 1 58.07 ? O3D NAP 202 A 1 
HETATM 33 C C2D NAP . . . C 3 -0.449 -3.991 14.666 1 59.32 ? C2D NAP 202 A 1 
HETATM 34 O O2D NAP . . . C 3 -1.665 -3.387 14.275 1 66.07 ? O2D NAP 202 A 1 
HETATM 35 C C1D NAP . . . C 3 0.343 -2.976 15.539 1 52.87 ? C1D NAP 202 A 1 
HETATM 36 N N1N NAP . . . C 3 1.072 -2.015 14.685 1 52.29 ? N1N NAP 202 A 1 
HETATM 37 C C2N NAP . . . C 3 1.025 -0.68 15.006 1 49.68 ? C2N NAP 202 A 1 
HETATM 38 C C3N NAP . . . C 3 2.023 0.149 14.595 1 46.07 ? C3N NAP 202 A 1 
HETATM 39 C C7N NAP . . . C 3 1.899 1.582 14.995 1 42.49 ? C7N NAP 202 A 1 
HETATM 40 O O7N NAP . . . C 3 2.832 2.417 14.912 1 32.71 ? O7N NAP 202 A 1 
HETATM 41 N N7N NAP . . . C 3 0.626 2.009 15.505 1 36.34 ? N7N NAP 202 A 1 
HETATM 42 C C4N NAP . . . C 3 3.174 -0.38 13.776 1 38.7 ? C4N NAP 202 A 1 
HETATM 43 C C5N NAP . . . C 3 2.847 -1.679 13.116 1 39.77 ? C5N NAP 202 A 1 
HETATM 44 C C6N NAP . . . C 3 1.833 -2.436 13.558 1 49.1 ? C6N NAP 202 A 1 
HETATM 45 P P2B NAP . . . C 3 6.385 -16.123 13.354 1 21.95 ? P2B NAP 202 A 1 
HETATM 46 O O1X NAP . . . C 3 6.084 -16.45 11.926 1 32.87 ? O1X NAP 202 A 1 
HETATM 47 O O2X NAP . . . C 3 7.783 -16.465 13.876 1 30.64 ? O2X NAP 202 A 1 
HETATM 48 O O3X NAP . . . C 3 5.244 -16.124 14.336 1 35.28 ? O3X NAP 202 A 1 
#
_model_server_stats.io_time_ms              60 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           317 
_model_server_stats.encode_time_ms          11 
_model_server_stats.element_count           48 
#