data_5Z6R # _model_server_result.job_id 9EfiS8saqGlQLVqlB1f3HQ _model_server_result.datetime_utc '2024-10-15 11:20:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5z6r # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":701}' # _entry.id 5Z6R # _exptl.entry_id 5Z6R _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 507.181 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5Z6R _cell.length_a 87.257 _cell.length_b 87.257 _cell.length_c 88.961 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5Z6R _symmetry.cell_setting ? _symmetry.Int_Tables_number 170 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 5Z6R _atom_sites.fract_transf_matrix[1][1] 0.01146 _atom_sites.fract_transf_matrix[1][2] 0.006617 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013233 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011241 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id B _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id ATP _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 701 _pdbx_nonpoly_scheme.auth_seq_num 701 _pdbx_nonpoly_scheme.pdb_mon_id ATP _pdbx_nonpoly_scheme.auth_mon_id ATP _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . B 2 -27.437 -11.105 1.974 1 116.11 ? PG ATP 701 A 1 HETATM 2 O O1G ATP . . . B 2 -27.121 -9.732 1.529 1 107.76 ? O1G ATP 701 A 1 HETATM 3 O O2G ATP . . . B 2 -26.263 -12.001 1.749 1 118.26 ? O2G ATP 701 A 1 HETATM 4 O O3G ATP . . . B 2 -28.065 -11.221 3.332 1 118.54 ? O3G ATP 701 A 1 HETATM 5 P PB ATP . . . B 2 -29.51 -12.824 1.57 1 76.32 ? PB ATP 701 A 1 HETATM 6 O O1B ATP . . . B 2 -30.155 -13.516 0.489 1 74.15 ? O1B ATP 701 A 1 HETATM 7 O O2B ATP . . . B 2 -28.736 -13.597 2.509 1 88.55 ? O2B ATP 701 A 1 HETATM 8 O O3B ATP . . . B 2 -28.634 -11.645 1.053 1 94.78 ? O3B ATP 701 A 1 HETATM 9 P PA ATP . . . B 2 -31.205 -13.013 3.679 1 85.75 ? PA ATP 701 A 1 HETATM 10 O O1A ATP . . . B 2 -31.401 -14.415 3.267 1 79.02 ? O1A ATP 701 A 1 HETATM 11 O O2A ATP . . . B 2 -30.386 -12.635 4.845 1 79.77 ? O2A ATP 701 A 1 HETATM 12 O O3A ATP . . . B 2 -30.627 -12.211 2.463 1 83.19 ? O3A ATP 701 A 1 HETATM 13 O O5' ATP . . . B 2 -32.685 -12.531 3.816 1 86.09 ? O5' ATP 701 A 1 HETATM 14 C C5' ATP . . . B 2 -33.129 -11.208 3.698 1 85.26 ? C5' ATP 701 A 1 HETATM 15 C C4' ATP . . . B 2 -34.591 -11.144 4.125 1 84.1 ? C4' ATP 701 A 1 HETATM 16 O O4' ATP . . . B 2 -35.428 -11.756 3.174 1 82.2 ? O4' ATP 701 A 1 HETATM 17 C C3' ATP . . . B 2 -34.781 -11.91 5.398 1 83.44 ? C3' ATP 701 A 1 HETATM 18 O O3' ATP . . . B 2 -35.361 -11.103 6.42 1 81.12 ? O3' ATP 701 A 1 HETATM 19 C C2' ATP . . . B 2 -35.753 -12.986 5.059 1 83.07 ? C2' ATP 701 A 1 HETATM 20 O O2' ATP . . . B 2 -36.608 -12.929 6.188 1 95.27 ? O2' ATP 701 A 1 HETATM 21 C C1' ATP . . . B 2 -36.392 -12.585 3.744 1 75.84 ? C1' ATP 701 A 1 HETATM 22 N N9 ATP . . . B 2 -36.588 -13.701 2.791 1 67.92 ? N9 ATP 701 A 1 HETATM 23 C C8 ATP . . . B 2 -36.026 -13.88 1.612 1 63.13 ? C8 ATP 701 A 1 HETATM 24 N N7 ATP . . . B 2 -36.425 -14.999 0.991 1 60.86 ? N7 ATP 701 A 1 HETATM 25 C C5 ATP . . . B 2 -37.282 -15.589 1.8 1 66.15 ? C5 ATP 701 A 1 HETATM 26 C C6 ATP . . . B 2 -38.094 -16.824 1.804 1 68.83 ? C6 ATP 701 A 1 HETATM 27 N N6 ATP . . . B 2 -38.131 -17.746 0.813 1 65.86 ? N6 ATP 701 A 1 HETATM 28 N N1 ATP . . . B 2 -38.854 -17.035 2.863 1 72.7 ? N1 ATP 701 A 1 HETATM 29 C C2 ATP . . . B 2 -38.894 -16.199 3.879 1 75.64 ? C2 ATP 701 A 1 HETATM 30 N N3 ATP . . . B 2 -38.189 -15.076 3.927 1 74.19 ? N3 ATP 701 A 1 HETATM 31 C C4 ATP . . . B 2 -37.378 -14.719 2.951 1 67.42 ? C4 ATP 701 A 1 # _model_server_stats.io_time_ms 39 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 284 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 31 #