data_5Z79 # _model_server_result.job_id 1Z-EcokMDjj5MINGwTrSDA _model_server_result.datetime_utc '2024-11-08 06:05:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5z79 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":1104}' # _entry.id 5Z79 # _exptl.entry_id 5Z79 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 94.24 _cell.angle_gamma 90 _cell.entry_id 5Z79 _cell.length_a 136.049 _cell.length_b 113.892 _cell.length_c 172.387 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5Z79 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 PISA dimeric 2 author_and_software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,G,H,I,J,K,L,M,N,EA,FA 1 1 C,D,O,P,Q,R,S,T,U,V,W,X,GA,HA 2 1 E,F,Y,Z,AA,BA,CA,DA,IA,JA 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 J N N ? 5 R N N ? 5 W N N ? 5 AA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASN 342 A ASN 342 1_555 J MG MG . A MG 1104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.107 ? metalc ? metalc2 G O2P HH2 . A HH2 1101 1_555 J MG MG . A MG 1104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.201 ? metalc ? metalc3 G O4P HH2 . A HH2 1101 1_555 J MG MG . A MG 1104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.202 ? metalc ? metalc4 C OD1 ASN 342 C ASN 342 1_555 R MG MG . C MG 1104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.251 ? metalc ? metalc5 O O2P HH2 . C HH2 1101 1_555 R MG MG . C MG 1104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.193 ? metalc ? metalc6 O O5P HH2 . C HH2 1101 1_555 R MG MG . C MG 1104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.183 ? metalc ? metalc7 D OD1 ASN 342 D ASN 342 1_555 W MG MG . D MG 1104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.102 ? metalc ? metalc8 T O4P HH2 . D HH2 1101 1_555 W MG MG . D MG 1104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.177 ? metalc ? metalc9 W MG MG . D MG 1104 1_555 HA O HOH . D HOH 1239 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.621 ? metalc ? metalc10 E OD1 ASN 342 E ASN 342 1_555 AA MG MG . E MG 1103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.105 ? metalc ? metalc11 Y O3P HH2 . E HH2 1101 1_555 AA MG MG . E MG 1103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.195 ? metalc ? metalc12 Y O5P HH2 . E HH2 1101 1_555 AA MG MG . E MG 1103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.8 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5Z79 _atom_sites.fract_transf_matrix[1][1] 0.00735 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000544 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00878 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005817 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 2 HH2 A 1 1101 1101 HH2 HH2 . H 3 APC A 1 1102 1102 APC APC . I 4 PAB A 1 1103 1103 PAB PAB . J 5 MG A 1 1104 1104 MG MG . K 6 PE0 A 1 1105 1105 PE0 PE0 . L 2 HH2 B 1 1101 1101 HH2 HH2 . M 7 5AD B 1 1102 1102 5AD 5AD . N 4 PAB B 1 1103 1103 PAB PAB . O 2 HH2 C 1 1101 1101 HH2 HH2 . P 3 APC C 1 1102 1102 APC APC . Q 4 PAB C 1 1103 1103 PAB PAB . R 5 MG C 1 1104 1104 MG MG . S 6 PE0 C 1 1105 1105 PE0 PE0 . T 2 HH2 D 1 1101 1101 HH2 HH2 . U 7 5AD D 1 1102 1102 5AD 5AD . V 4 PAB D 1 1103 1103 PAB PAB . W 5 MG D 1 1104 1104 MG MG . X 6 PE0 D 1 1105 1105 PE0 PE0 . Y 2 HH2 E 1 1101 1101 HH2 HH2 . Z 4 PAB E 1 1102 1102 PAB PAB . AA 5 MG E 1 1103 1103 MG MG . BA 6 PE0 E 1 1104 1104 PE0 PE0 . CA 2 HH2 F 1 1101 1101 HH2 HH2 . DA 4 PAB F 1 1102 1102 PAB PAB . EA 8 HOH A 1 1201 1204 HOH HOH . EA 8 HOH A 2 1202 1229 HOH HOH . EA 8 HOH A 3 1203 1201 HOH HOH . EA 8 HOH A 4 1204 1208 HOH HOH . EA 8 HOH A 5 1205 1205 HOH HOH . EA 8 HOH A 6 1206 1209 HOH HOH . EA 8 HOH A 7 1207 1220 HOH HOH . EA 8 HOH A 8 1208 1230 HOH HOH . EA 8 HOH A 9 1209 1222 HOH HOH . EA 8 HOH A 10 1210 1207 HOH HOH . EA 8 HOH A 11 1211 1215 HOH HOH . EA 8 HOH A 12 1212 1217 HOH HOH . EA 8 HOH A 13 1213 1226 HOH HOH . EA 8 HOH A 14 1214 1214 HOH HOH . EA 8 HOH A 15 1215 1203 HOH HOH . EA 8 HOH A 16 1216 1206 HOH HOH . EA 8 HOH A 17 1217 1227 HOH HOH . EA 8 HOH A 18 1218 1224 HOH HOH . EA 8 HOH A 19 1219 1232 HOH HOH . EA 8 HOH A 20 1220 1245 HOH HOH . EA 8 HOH A 21 1221 1240 HOH HOH . EA 8 HOH A 22 1222 1223 HOH HOH . EA 8 HOH A 23 1223 1211 HOH HOH . EA 8 HOH A 24 1224 1212 HOH HOH . EA 8 HOH A 25 1225 1249 HOH HOH . EA 8 HOH A 26 1226 1216 HOH HOH . EA 8 HOH A 27 1227 1231 HOH HOH . EA 8 HOH A 28 1228 1239 HOH HOH . EA 8 HOH A 29 1229 1213 HOH HOH . EA 8 HOH A 30 1230 1243 HOH HOH . EA 8 HOH A 31 1231 1242 HOH HOH . EA 8 HOH A 32 1232 1237 HOH HOH . EA 8 HOH A 33 1233 1218 HOH HOH . EA 8 HOH A 34 1234 1246 HOH HOH . EA 8 HOH A 35 1235 1220 HOH HOH . EA 8 HOH A 36 1236 1221 HOH HOH . EA 8 HOH A 37 1237 1254 HOH HOH . EA 8 HOH A 38 1238 1247 HOH HOH . EA 8 HOH A 39 1239 1219 HOH HOH . EA 8 HOH A 40 1240 1248 HOH HOH . EA 8 HOH A 41 1241 1238 HOH HOH . EA 8 HOH A 42 1242 1253 HOH HOH . EA 8 HOH A 43 1243 1236 HOH HOH . EA 8 HOH A 44 1244 1244 HOH HOH . EA 8 HOH A 45 1245 1252 HOH HOH . EA 8 HOH A 46 1246 1233 HOH HOH . EA 8 HOH A 47 1247 1255 HOH HOH . EA 8 HOH A 48 1248 1256 HOH HOH . FA 8 HOH B 1 1201 1210 HOH HOH . FA 8 HOH B 2 1202 1211 HOH HOH . FA 8 HOH B 3 1203 1208 HOH HOH . FA 8 HOH B 4 1204 1203 HOH HOH . FA 8 HOH B 5 1205 1235 HOH HOH . FA 8 HOH B 6 1206 1201 HOH HOH . FA 8 HOH B 7 1207 1215 HOH HOH . FA 8 HOH B 8 1208 1202 HOH HOH . FA 8 HOH B 9 1209 1204 HOH HOH . FA 8 HOH B 10 1210 1213 HOH HOH . FA 8 HOH B 11 1211 1216 HOH HOH . FA 8 HOH B 12 1212 1206 HOH HOH . FA 8 HOH B 13 1213 1214 HOH HOH . FA 8 HOH B 14 1214 1222 HOH HOH . FA 8 HOH B 15 1215 1219 HOH HOH . FA 8 HOH B 16 1216 1205 HOH HOH . GA 8 HOH C 1 1201 1201 HOH HOH . GA 8 HOH C 2 1202 1204 HOH HOH . GA 8 HOH C 3 1203 1210 HOH HOH . GA 8 HOH C 4 1204 1209 HOH HOH . GA 8 HOH C 5 1205 1212 HOH HOH . GA 8 HOH C 6 1206 1207 HOH HOH . GA 8 HOH C 7 1207 1202 HOH HOH . GA 8 HOH C 8 1208 1205 HOH HOH . GA 8 HOH C 9 1209 1206 HOH HOH . GA 8 HOH C 10 1210 1211 HOH HOH . GA 8 HOH C 11 1211 1237 HOH HOH . GA 8 HOH C 12 1212 1224 HOH HOH . GA 8 HOH C 13 1213 1243 HOH HOH . GA 8 HOH C 14 1214 1238 HOH HOH . GA 8 HOH C 15 1215 1239 HOH HOH . GA 8 HOH C 16 1216 1221 HOH HOH . GA 8 HOH C 17 1217 1216 HOH HOH . GA 8 HOH C 18 1218 1225 HOH HOH . GA 8 HOH C 19 1219 1218 HOH HOH . GA 8 HOH C 20 1220 1219 HOH HOH . GA 8 HOH C 21 1221 1223 HOH HOH . GA 8 HOH C 22 1222 1215 HOH HOH . GA 8 HOH C 23 1223 1251 HOH HOH . GA 8 HOH C 24 1224 1231 HOH HOH . GA 8 HOH C 25 1225 1213 HOH HOH . GA 8 HOH C 26 1226 1233 HOH HOH . GA 8 HOH C 27 1227 1230 HOH HOH . GA 8 HOH C 28 1228 1220 HOH HOH . GA 8 HOH C 29 1229 1232 HOH HOH . GA 8 HOH C 30 1230 1229 HOH HOH . GA 8 HOH C 31 1231 1234 HOH HOH . GA 8 HOH C 32 1232 1242 HOH HOH . GA 8 HOH C 33 1233 1244 HOH HOH . GA 8 HOH C 34 1234 1228 HOH HOH . GA 8 HOH C 35 1235 1227 HOH HOH . GA 8 HOH C 36 1236 1241 HOH HOH . GA 8 HOH C 37 1237 1226 HOH HOH . GA 8 HOH C 38 1238 1222 HOH HOH . GA 8 HOH C 39 1239 1217 HOH HOH . GA 8 HOH C 40 1240 1245 HOH HOH . GA 8 HOH C 41 1241 1240 HOH HOH . GA 8 HOH C 42 1242 1247 HOH HOH . GA 8 HOH C 43 1243 1236 HOH HOH . GA 8 HOH C 44 1244 1251 HOH HOH . GA 8 HOH C 45 1245 1250 HOH HOH . GA 8 HOH C 46 1246 1246 HOH HOH . GA 8 HOH C 47 1247 1252 HOH HOH . HA 8 HOH D 1 1201 1218 HOH HOH . HA 8 HOH D 2 1202 1216 HOH HOH . HA 8 HOH D 3 1203 1204 HOH HOH . HA 8 HOH D 4 1204 1217 HOH HOH . HA 8 HOH D 5 1205 1235 HOH HOH . HA 8 HOH D 6 1206 1202 HOH HOH . HA 8 HOH D 7 1207 1225 HOH HOH . HA 8 HOH D 8 1208 1223 HOH HOH . HA 8 HOH D 9 1209 1210 HOH HOH . HA 8 HOH D 10 1210 1209 HOH HOH . HA 8 HOH D 11 1211 1208 HOH HOH . HA 8 HOH D 12 1212 1242 HOH HOH . HA 8 HOH D 13 1213 1215 HOH HOH . HA 8 HOH D 14 1214 1237 HOH HOH . HA 8 HOH D 15 1215 1232 HOH HOH . HA 8 HOH D 16 1216 1236 HOH HOH . HA 8 HOH D 17 1217 1211 HOH HOH . HA 8 HOH D 18 1218 1224 HOH HOH . HA 8 HOH D 19 1219 1230 HOH HOH . HA 8 HOH D 20 1220 1234 HOH HOH . HA 8 HOH D 21 1221 1226 HOH HOH . HA 8 HOH D 22 1222 1228 HOH HOH . HA 8 HOH D 23 1223 1231 HOH HOH . HA 8 HOH D 24 1224 1241 HOH HOH . HA 8 HOH D 25 1225 1247 HOH HOH . HA 8 HOH D 26 1226 1227 HOH HOH . HA 8 HOH D 27 1227 1239 HOH HOH . HA 8 HOH D 28 1228 1222 HOH HOH . HA 8 HOH D 29 1229 1229 HOH HOH . HA 8 HOH D 30 1230 1214 HOH HOH . HA 8 HOH D 31 1231 1246 HOH HOH . HA 8 HOH D 32 1232 1213 HOH HOH . HA 8 HOH D 33 1233 1251 HOH HOH . HA 8 HOH D 34 1234 1238 HOH HOH . HA 8 HOH D 35 1235 1252 HOH HOH . HA 8 HOH D 36 1236 1253 HOH HOH . HA 8 HOH D 37 1237 1207 HOH HOH . HA 8 HOH D 38 1238 1201 HOH HOH . HA 8 HOH D 39 1239 1255 HOH HOH . HA 8 HOH D 40 1240 1206 HOH HOH . HA 8 HOH D 41 1241 1256 HOH HOH . HA 8 HOH D 42 1242 1249 HOH HOH . HA 8 HOH D 43 1243 1259 HOH HOH . HA 8 HOH D 44 1244 1244 HOH HOH . HA 8 HOH D 45 1245 1212 HOH HOH . HA 8 HOH D 46 1246 1260 HOH HOH . HA 8 HOH D 47 1247 1254 HOH HOH . HA 8 HOH D 48 1248 1245 HOH HOH . HA 8 HOH D 49 1249 1261 HOH HOH . HA 8 HOH D 50 1250 1257 HOH HOH . IA 8 HOH E 1 1201 1210 HOH HOH . IA 8 HOH E 2 1202 1201 HOH HOH . IA 8 HOH E 3 1203 1203 HOH HOH . IA 8 HOH E 4 1204 1202 HOH HOH . IA 8 HOH E 5 1205 1209 HOH HOH . IA 8 HOH E 6 1206 1207 HOH HOH . IA 8 HOH E 7 1207 1204 HOH HOH . IA 8 HOH E 8 1208 1211 HOH HOH . IA 8 HOH E 9 1209 1229 HOH HOH . IA 8 HOH E 10 1210 1206 HOH HOH . IA 8 HOH E 11 1211 1213 HOH HOH . IA 8 HOH E 12 1212 1232 HOH HOH . IA 8 HOH E 13 1213 1214 HOH HOH . IA 8 HOH E 14 1214 1205 HOH HOH . IA 8 HOH E 15 1215 1215 HOH HOH . IA 8 HOH E 16 1216 1212 HOH HOH . IA 8 HOH E 17 1217 1224 HOH HOH . IA 8 HOH E 18 1218 1225 HOH HOH . IA 8 HOH E 19 1219 1220 HOH HOH . IA 8 HOH E 20 1220 1223 HOH HOH . IA 8 HOH E 21 1221 1222 HOH HOH . IA 8 HOH E 22 1222 1226 HOH HOH . IA 8 HOH E 23 1223 1230 HOH HOH . IA 8 HOH E 24 1224 1216 HOH HOH . IA 8 HOH E 25 1225 1227 HOH HOH . IA 8 HOH E 26 1226 1231 HOH HOH . IA 8 HOH E 27 1227 1228 HOH HOH . IA 8 HOH E 28 1228 1219 HOH HOH . IA 8 HOH E 29 1229 1234 HOH HOH . IA 8 HOH E 30 1230 1221 HOH HOH . IA 8 HOH E 31 1231 1237 HOH HOH . IA 8 HOH E 32 1232 1236 HOH HOH . IA 8 HOH E 33 1233 1235 HOH HOH . IA 8 HOH E 34 1234 1240 HOH HOH . IA 8 HOH E 35 1235 1238 HOH HOH . IA 8 HOH E 36 1236 1243 HOH HOH . IA 8 HOH E 37 1237 1241 HOH HOH . JA 8 HOH F 1 1201 1201 HOH HOH . JA 8 HOH F 2 1202 1202 HOH HOH . JA 8 HOH F 3 1203 1210 HOH HOH . JA 8 HOH F 4 1204 1207 HOH HOH . JA 8 HOH F 5 1205 1208 HOH HOH . JA 8 HOH F 6 1206 1211 HOH HOH . JA 8 HOH F 7 1207 1206 HOH HOH . JA 8 HOH F 8 1208 1205 HOH HOH . JA 8 HOH F 9 1209 1220 HOH HOH . JA 8 HOH F 10 1210 1213 HOH HOH . JA 8 HOH F 11 1211 1215 HOH HOH . JA 8 HOH F 12 1212 1218 HOH HOH . JA 8 HOH F 13 1213 1219 HOH HOH . JA 8 HOH F 14 1214 1209 HOH HOH . JA 8 HOH F 15 1215 1222 HOH HOH . JA 8 HOH F 16 1216 1204 HOH HOH . JA 8 HOH F 17 1217 1217 HOH HOH . JA 8 HOH F 18 1218 1214 HOH HOH . JA 8 HOH F 19 1219 1226 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id J _atom_site.label_entity_id 5 _atom_site.Cartn_x -21.65 _atom_site.Cartn_y -32.608 _atom_site.Cartn_z -16.924 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 31.87 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 1104 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 57 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 61 _model_server_stats.query_time_ms 291 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 1 #