data_5Z7A # _model_server_result.job_id Ho2YV2rtSuofFzdxm3LVaA _model_server_result.datetime_utc '2024-11-04 22:20:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5z7a # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":202}' # _entry.id 5Z7A # _exptl.entry_id 5Z7A _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 154.251 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2,3-DIHYDROXY-1,4-DITHIOBUTANE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5Z7A _cell.length_a 46.502 _cell.length_b 46.502 _cell.length_c 99.561 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5Z7A _symmetry.cell_setting ? _symmetry.Int_Tables_number 144 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,G 1 1 B,F,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C4 H10 O2 S2' _chem_comp.formula_weight 154.251 _chem_comp.id DTT _chem_comp.mon_nstd_flag . _chem_comp.name 2,3-DIHYDROXY-1,4-DITHIOBUTANE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 1,4-DITHIOTHREITOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S1 C1 DTT sing 83 n n S1 HS1 DTT sing 84 n n C1 C2 DTT sing 85 n n C1 H11 DTT sing 86 n n C1 H12 DTT sing 87 n n C2 O2 DTT sing 88 n n C2 C3 DTT sing 89 n n C2 H2 DTT sing 90 n n O2 HO2 DTT sing 91 n n C3 O3 DTT sing 92 n n C3 C4 DTT sing 93 n n C3 H3 DTT sing 94 n n O3 HO3 DTT sing 95 n n C4 S4 DTT sing 96 n n C4 H41 DTT sing 97 n n C4 H42 DTT sing 98 n n S4 HS2 DTT sing 99 n n # _atom_sites.entry_id 5Z7A _atom_sites.fract_transf_matrix[1][1] 0.021504 _atom_sites.fract_transf_matrix[1][2] 0.012416 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.024831 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010044 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SO4 A 1 201 1 SO4 SO4 . D 3 DTT A 1 202 3 DTT DTT . E 4 GOL A 1 203 4 GOL GOL . F 2 SO4 B 1 201 2 SO4 SO4 . G 5 HOH A 1 301 48 HOH HOH . G 5 HOH A 2 302 9 HOH HOH . G 5 HOH A 3 303 42 HOH HOH . G 5 HOH A 4 304 26 HOH HOH . G 5 HOH A 5 305 12 HOH HOH . G 5 HOH A 6 306 30 HOH HOH . G 5 HOH A 7 307 2 HOH HOH . G 5 HOH A 8 308 56 HOH HOH . G 5 HOH A 9 309 37 HOH HOH . G 5 HOH A 10 310 7 HOH HOH . G 5 HOH A 11 311 22 HOH HOH . G 5 HOH A 12 312 44 HOH HOH . G 5 HOH A 13 313 59 HOH HOH . G 5 HOH A 14 314 1 HOH HOH . G 5 HOH A 15 315 10 HOH HOH . G 5 HOH A 16 316 45 HOH HOH . G 5 HOH A 17 317 61 HOH HOH . G 5 HOH A 18 318 31 HOH HOH . G 5 HOH A 19 319 41 HOH HOH . G 5 HOH A 20 320 20 HOH HOH . G 5 HOH A 21 321 15 HOH HOH . G 5 HOH A 22 322 23 HOH HOH . G 5 HOH A 23 323 18 HOH HOH . G 5 HOH A 24 324 34 HOH HOH . G 5 HOH A 25 325 63 HOH HOH . G 5 HOH A 26 326 13 HOH HOH . G 5 HOH A 27 327 24 HOH HOH . G 5 HOH A 28 328 4 HOH HOH . G 5 HOH A 29 329 43 HOH HOH . G 5 HOH A 30 330 57 HOH HOH . G 5 HOH A 31 331 38 HOH HOH . G 5 HOH A 32 332 47 HOH HOH . G 5 HOH A 33 333 53 HOH HOH . H 5 HOH B 1 301 54 HOH HOH . H 5 HOH B 2 302 46 HOH HOH . H 5 HOH B 3 303 52 HOH HOH . H 5 HOH B 4 304 60 HOH HOH . H 5 HOH B 5 305 3 HOH HOH . H 5 HOH B 6 306 14 HOH HOH . H 5 HOH B 7 307 21 HOH HOH . H 5 HOH B 8 308 25 HOH HOH . H 5 HOH B 9 309 16 HOH HOH . H 5 HOH B 10 310 50 HOH HOH . H 5 HOH B 11 311 39 HOH HOH . H 5 HOH B 12 312 11 HOH HOH . H 5 HOH B 13 313 32 HOH HOH . H 5 HOH B 14 314 36 HOH HOH . H 5 HOH B 15 315 8 HOH HOH . H 5 HOH B 16 316 49 HOH HOH . H 5 HOH B 17 317 19 HOH HOH . H 5 HOH B 18 318 62 HOH HOH . H 5 HOH B 19 319 35 HOH HOH . H 5 HOH B 20 320 5 HOH HOH . H 5 HOH B 21 321 6 HOH HOH . H 5 HOH B 22 322 40 HOH HOH . H 5 HOH B 23 323 29 HOH HOH . H 5 HOH B 24 324 17 HOH HOH . H 5 HOH B 25 325 27 HOH HOH . H 5 HOH B 26 326 33 HOH HOH . H 5 HOH B 27 327 64 HOH HOH . H 5 HOH B 28 328 51 HOH HOH . H 5 HOH B 29 329 55 HOH HOH . H 5 HOH B 30 330 28 HOH HOH . H 5 HOH B 31 331 58 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S1 DTT . . . D 3 7.641 -13.247 -2.923 1 51.78 ? S1 DTT 202 A 1 HETATM 2 C C1 DTT . . . D 3 9.42 -13.572 -2.86 1 40.14 ? C1 DTT 202 A 1 HETATM 3 C C2 DTT . . . D 3 9.983 -13.939 -4.228 1 40.41 ? C2 DTT 202 A 1 HETATM 4 O O2 DTT . . . D 3 9.701 -15.295 -4.499 1 43.18 ? O2 DTT 202 A 1 HETATM 5 C C3 DTT . . . D 3 11.488 -13.71 -4.304 1 33.05 ? C3 DTT 202 A 1 HETATM 6 O O3 DTT . . . D 3 11.911 -13.755 -5.649 1 37.1 ? O3 DTT 202 A 1 HETATM 7 C C4 DTT . . . D 3 11.892 -12.381 -3.67 1 28.81 ? C4 DTT 202 A 1 HETATM 8 S S4 DTT . . . D 3 11.256 -10.929 -4.547 1 40.35 ? S4 DTT 202 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 296 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 8 #